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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957069
Clone id TST39A01NGRL0027_G09
Library
Length 581
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_G09. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGCCATCTTTCTGTGTATACTTTTCTCTACCCCCGCCCCCTCCTCCTTGTACAGCACAGA
TTATCGGCCCTCATCATGGCTCTGCTGCAAGCTGCCAACTCCATTTCCTGCACCCACAAG
CTCTCCCTTCCCGTACAACGCCCCGCCCACAGTAGGATTTGCTCTTCTCTCTCTACGCCC
ACCCTCAAGGGAGTGCCTCCTCCCTCTTTAAGGTTCGGATCCTCTTTTTTCAATGGCTCC
AGCCTGCTGAAGGTGAAGAGAGAGATACAAGAGCTGAAGAGCGGCAGCAATTCGAGTAAG
GGGGGAGCTTGCACAGCAACCAGTTCTATCACTCTCTCGGGCGAGTTGCTGCGATGGATC
TTTGCCGGCGCAGCGGCGGTGCTTATGTACCTCAAGAACACATCTATTAACAAGAATATT
CTGGTTCCATTGTTGGCATTGCAAGCTCCACGCGATGTTGTCACAGCGGTCCGGGGTGAA
TATGGACTTTGGGCGGCGTTTCTAGCTCTATTGGTTAGGTTGTTTTACCAACTTCCAGGG
GAGCTTCGAAGCTACCGCTTGTGCTTGTGTTGCTATTTGAT
■■Homology search results ■■ -
sp_hit_id Q9QYX3
Definition sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
Align length 42
Score (bit) 31.6
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G09, 5'
         (581 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari GN=R...    32   3.0  
sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain O...    30   3.4  
sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix lagot...    31   5.1  
sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys edw...    30   6.7  
sp|Q03964|YD17A_YEAST Transposon Ty1-DR2 Gag polyprotein OS=Sacc...    30   8.7  

>sp|Q9QYX3|RNAS1_MUSPA Ribonuclease pancreatic OS=Mus pahari
           GN=Rnase1 PE=2 SV=1
          Length = 149

 Score = 31.6 bits (70), Expect = 3.0
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +3

Query: 204 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           LF + +L   W+QP+ G+E   +  ERQ  +  GS +++  Y
Sbjct: 9   LFPLFVLLLGWVQPSLGKESSAQKFERQHMDSSGSSNNSPTY 50


>sp|Q6NYU2|HELZ_DANRE Probable helicase with zinc finger domain
            OS=Danio rerio GN=helz PE=2 SV=1
          Length = 1860

 Score = 29.6 bits (65), Expect(2) = 3.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)
 Frame = +3

Query: 69   PHHGSAASCQLHFLHPQALPSRTTP 143
            PH  SAAS Q H   P  LPS+ TP
Sbjct: 1767 PHPASAASLQHHGQFPPLLPSKQTP 1791



 Score = 20.4 bits (41), Expect(2) = 3.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 143  PPTVGFALLSLRPPSRECLLP 205
            PPT+ +A     PP    +LP
Sbjct: 1808 PPTMSYASALRAPPKPRPMLP 1828


>sp|Q8SQ05|RNAS1_LAGLA Ribonuclease pancreatic OS=Lagothrix
           lagotricha GN=RNASE1 PE=3 SV=1
          Length = 156

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 219 ILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           +L   W+QP+ G+E   +  +RQ  +  GSL SN  Y
Sbjct: 17  LLVLGWVQPSLGKESRAKKFQRQHMDSDGSLSSNPTY 53


>sp|Q9WUS3|RNAS1_LEOED Ribonuclease pancreatic OS=Leopoldamys
           edwardsi GN=RNASE1 PE=2 SV=1
          Length = 149

 Score = 30.4 bits (67), Expect = 6.7
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = +3

Query: 204 LFKVRILFFQWLQPAEGEERDTRAEERQQFE*GGSLHSNQFY 329
           LF + +L   W+QP+ G+E   +   RQ  +  GS +S+  Y
Sbjct: 9   LFSLLVLVLGWVQPSLGKESSAQKFNRQHMDTEGSSNSSPTY 50


>sp|Q03964|YD17A_YEAST Transposon Ty1-DR2 Gag polyprotein
           OS=Saccharomyces cerevisiae GN=TY1A-DR2 PE=2 SV=1
          Length = 440

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
 Frame = -2

Query: 571 NTSTSGSFEAP---LEVGKTT*PIELETPPKVHIHPG 470
           N STS +F  P   L  G TT PI+L+    +H+ PG
Sbjct: 402 NVSTSNNFPGPDNDLIRGSTTEPIQLKNKHDLHLRPG 438
tr_hit_id B8LQ60
Definition tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 90
Score (bit) 107.0
E-value 6.0e-22
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957069|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G09, 5'
         (581 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea...   107   6e-22
tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1 OS=Cr...    96   2e-18
tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gam...    94   7e-18
tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subs...    92   2e-17
tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Or...    92   3e-17
tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein COR413...    92   3e-17
tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza...    92   3e-17
tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea m...    92   3e-17
tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza...    90   1e-16
tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1 OS=Tr...    84   4e-15
tr|Q8W0V1|Q8W0V1_HORVD Cold acclimation WCOR413-like protein gam...    84   6e-15
tr|A7QQJ9|A7QQJ9_VITVI Chromosome undetermined scaffold_143, who...    79   1e-13
tr|Q9C7R2|Q9C7R2_ARATH Putative uncharacterized protein F15D2.29...    79   2e-13
tr|Q94AL8|Q94AL8_ARATH Putative uncharacterized protein At1g2939...    79   2e-13
tr|Q8RXM0|Q8RXM0_ARATH Putative uncharacterized protein At1g2939...    78   4e-13
tr|Q8L813|Q8L813_ARATH Putative uncharacterized protein At1g2939...    76   1e-12
tr|A9RCW6|A9RCW6_PHYPA Predicted protein (Fragment) OS=Physcomit...    69   2e-10
tr|Q93WS4|Q93WS4_PHYPA Cold acclimation protein WCOR413-like pro...    57   1e-06
tr|A9S4D3|A9S4D3_PHYPA Predicted protein OS=Physcomitrella paten...    57   1e-06
tr|A9SZ92|A9SZ92_PHYPA Predicted protein OS=Physcomitrella paten...    56   2e-06
tr|A9RWC5|A9RWC5_PHYPA Predicted protein OS=Physcomitrella paten...    52   2e-05
tr|A9X4J8|A9X4J8_9MAGN Cold acclimation protein COR413-PM1 OS=Ch...    50   7e-05
tr|A9S0S4|A9S0S4_PHYPA Predicted protein OS=Physcomitrella paten...    49   2e-04
tr|B5TV68|B5TV68_CAMSI Cold acclimation protein WCOR413-like pro...    49   2e-04
tr|P93613|P93613_WHEAT Cold acclimation protein WCOR413 OS=Triti...    48   5e-04
tr|Q6PQ36|Q6PQ36_9CARY Putative stress-responsive protein OS=Tam...    47   0.001
tr|A9NT54|A9NT54_PICSI Putative uncharacterized protein OS=Picea...    47   0.001
tr|Q9XIM7|Q9XIM7_ARATH Similar to cold acclimation protein WCOR4...    46   0.001
tr|Q9FUW4|Q9FUW4_ORYSJ Os03g0767800 protein OS=Oryza sativa subs...    46   0.001
tr|Q93ZK5|Q93ZK5_WHEAT Cold acclimation protein WCOR413-like pro...    46   0.002

>tr|B8LQ60|B8LQ60_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 245

 Score =  107 bits (266), Expect = 6e-22
 Identities = 53/90 (58%), Positives = 66/90 (73%)
 Frame = +1

Query: 274 LKSGSNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPR 453
           + S + SS GGA +   S+ LS E LRW+F  AA VLM  K+T+INK+ LVPLLAL+AP 
Sbjct: 75  IHSIARSSYGGALSTECSVALSTEALRWLFGVAAVVLMLSKHTAINKSFLVPLLALEAPG 134

Query: 454 DVVTAVRGEYGLWAAFLALLVRLFYQLPGE 543
           DV + +RG+YGLW AFL  LVRLFY +PGE
Sbjct: 135 DVFSWIRGDYGLWTAFLVFLVRLFYYIPGE 164


>tr|Q84LB5|Q84LB5_CRYJA Cold acclimation protein COR413-TM1
           OS=Cryptomeria japonica PE=2 SV=1
          Length = 241

 Score = 95.5 bits (236), Expect = 2e-18
 Identities = 48/92 (52%), Positives = 62/92 (67%), Gaps = 3/92 (3%)
 Frame = +1

Query: 277 KSGSNSSKGGACT---ATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQA 447
           K G    +GG  +   A   +  S E LRW+FA ++ VLM+ K+T I K+ LVPLLALQA
Sbjct: 69  KLGGRGKRGGTSSIQCARVDLLYSTEALRWLFAVSSVVLMFSKHTVIRKSFLVPLLALQA 128

Query: 448 PRDVVTAVRGEYGLWAAFLALLVRLFYQLPGE 543
           P DVV+ +RG+YGLW AF   L+RLFY +PGE
Sbjct: 129 PGDVVSWIRGDYGLWTAFSIFLIRLFYPIPGE 160


>tr|B6T8R2|B6T8R2_MAIZE Cold acclimation WCOR413-like protein gamma
           form OS=Zea mays PE=2 SV=1
          Length = 226

 Score = 93.6 bits (231), Expect = 7e-18
 Identities = 44/83 (53%), Positives = 60/83 (72%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFYQLPGE 543
           G+YG W AFLALLVRLF+ +PGE
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPGE 150


>tr|Q688W8|Q688W8_ORYSJ Os05g0566800 protein OS=Oryza sativa subsp.
           japonica GN=OJ1781_H11.9 PE=2 SV=1
          Length = 222

 Score = 92.0 bits (227), Expect = 2e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQLPGE 543
            ++ +YG W AFLALLVRLF+ +PGE
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFSIPGE 146


>tr|Q84XU8|Q84XU8_ORYSJ Cold acclimation protein COR413-TM1 OS=Oryza
           sativa subsp. japonica PE=2 SV=1
          Length = 222

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPSSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQLPGE 543
            ++ +YG W AFLALLVRLF+ +PGE
Sbjct: 121 WIKSDYGQWTAFLALLVRLFFCIPGE 146


>tr|Q84LB3|Q84LB3_MAIZE Truncated cold acclimation protein
           COR413-TM1 OS=Zea mays PE=2 SV=1
          Length = 177

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFYQLPG 540
           G+YG W AFLALLVRLF+ +PG
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPG 149


>tr|B8AWS3|B8AWS3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21013 PE=4 SV=1
          Length = 222

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQLPGE 543
            ++ +YG W AFLALLVRLF+ +PGE
Sbjct: 121 WIKSDYGHWTAFLALLVRLFFSIPGE 146


>tr|B7ZY82|B7ZY82_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 177

 Score = 91.7 bits (226), Expect = 3e-17
 Identities = 43/82 (52%), Positives = 59/82 (71%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G A    SS  LS   ++WI AGA+AVL+  K T+I+K+ LVP  ALQAP  +++ ++
Sbjct: 68  SRGAAAVCHSSAHLSARTIQWISAGASAVLLVAKGTAIHKSFLVPFFALQAPCSIISWIK 127

Query: 475 GEYGLWAAFLALLVRLFYQLPG 540
           G+YG W AFLALLVRLF+ +PG
Sbjct: 128 GDYGQWTAFLALLVRLFFFIPG 149


>tr|A3B6W4|A3B6W4_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_018786 PE=4 SV=1
          Length = 247

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 42/86 (48%), Positives = 59/86 (68%)
 Frame = +1

Query: 286 SNSSKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVT 465
           ++  +GGA    SS  LS   ++W+ AGA AVL+  K T+I+K+ LVPL AL AP  V++
Sbjct: 61  ASGRRGGAAVCHSSAHLSARTMQWVSAGATAVLLLAKGTAIHKSFLVPLFALLAPCSVIS 120

Query: 466 AVRGEYGLWAAFLALLVRLFYQLPGE 543
            ++ +YG W A LALLVRLF+ +PGE
Sbjct: 121 WIKSDYGQWTALLALLVRLFFSIPGE 146


>tr|Q84XU9|Q84XU9_WHEAT Cold acclimation protein COR413-TM1
           OS=Triticum aestivum PE=2 SV=1
          Length = 221

 Score = 84.3 bits (207), Expect = 4e-15
 Identities = 41/83 (49%), Positives = 53/83 (63%)
 Frame = +1

Query: 295 SKGGACTATSSITLSGELLRWIFAGAAAVLMYLKNTSINKNILVPLLALQAPRDVVTAVR 474
           S+G      +S  LS    +W+   AAAVL+  K T I+K+ LVPL  LQAP  V++ ++
Sbjct: 63  SRGSGIVCNASAYLSPPTTQWVSVAAAAVLLLAKGTGIHKSFLVPLFVLQAPTAVISWIK 122

Query: 475 GEYGLWAAFLALLVRLFYQLPGE 543
            EYGLW AFLAL+VRLF   PGE
Sbjct: 123 SEYGLWTAFLALVVRLFLPFPGE 145