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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957070
Clone id TST39A01NGRL0027_G10
Library
Length 535
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_G10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CAAGAGCTCATCCTCCTGCAAGCATTAACTCTGCTGACAAGAGCCAAAATGGGTACCAGC
TTCAAGATGCTTCTAGCTCTCACACTTCTCTGCTCGGCCAGCTTCTTCGCCAATGCCGCC
CGCGAAGAGCCCCTCGATGCCAAACCCACCAATGTCAAGCCTGATGTCAAGCCCACCGAA
GTCCAGCCTCAAGAGACCGACGCTGGCTATGGTGGTGGTCATGGTTATGGCCATGGGGGT
GGAGGCTATGGTCATGGTGGTCATGGTGGCGGTTTGCAATCACAACCCGATGCTAAACCT
GAAGAGACTGATGCTGGCTATGGGCATGGTGGTGGTTATGGGCATGGTGGTGGCTACGGG
CATGGTGGGCACGGGAAATCCCAGGTTGAGGCAACTGATGGTGGCTACTACGGTGGTGGC
TATGGGCATGGTGGTGGGTATGGCCATGGCGGCTACGGACATGGTGGTGGTTGGCAATCA
CAAGCCAATGCTAAAACCTGAAGAGACTGATGCTGGCTATGGGCATGGTGGTGGC
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957070|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G10, 5'
         (535 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id B1JGI6
Definition tr|B1JGI6|B1JGI6_YERPY Phosphogluconate dehydratase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII)
Align length 27
Score (bit) 33.5
E-value 7.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957070|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_G10, 5'
         (535 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B1JGI6|B1JGI6_YERPY Phosphogluconate dehydratase OS=Yersinia ...    33   7.2  
tr|B2K9T5|B2K9T5_YERPB Lipoprotein OS=Yersinia pseudotuberculosi...    33   9.3  

>tr|B1JGI6|B1JGI6_YERPY Phosphogluconate dehydratase OS=Yersinia
           pseudotuberculosis serotype O:3 (strain YPIII)
           GN=YPK_1533 PE=4 SV=1
          Length = 245

 Score = 33.5 bits (75), Expect = 7.2
 Identities = 15/27 (55%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +1

Query: 121 REEPLDAKPTNVKP-DVKPTEVQPQET 198
           + +P++ KPT  KP DVKPTE +P ET
Sbjct: 107 QSKPVEVKPTVTKPVDVKPTETKPTET 133


>tr|B2K9T5|B2K9T5_YERPB Lipoprotein OS=Yersinia pseudotuberculosis
           serotype IB (strain PB1/+) GN=YPTS_2985 PE=4 SV=1
          Length = 360

 Score = 33.1 bits (74), Expect = 9.3
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = +1

Query: 118 AREEPLDAKPTNVKP-DVKPTEVQP 189
           A  +P D KPT+ KP D KPTE QP
Sbjct: 270 AETKPADTKPTDTKPTDTKPTEAQP 294