DK957100 |
Clone id |
TST39A01NGRL0027_H17 |
Library |
TST39 |
Length |
544 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_H17. 5' end sequence. |
Accession |
DK957100 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL162Contig1 |
Sequence |
GGTGTATCATCTATTTGTGCGCTAGACTTTCGAATGGATGAGTGGTGCATAGATGTTGCA CTAACTGGTTCGCAGAAGGCCCTCTCTCTACCAACTGGTCTTGGAATTGTGTGTGCAAGC CCCAAAGCCTTGGAGGCTTCCAAGACAGCAAAGTCACTGCGTGTTTTCTTCGACTGGAAC GATTACCTGCGCTTCTACAAAATGGGAACTTACTGGCCGTATACCCCATCCTCTCAGCTG CTGTATGGGTTGCGAGCTGCACTAGACCTCATCTTTGAAGAGGGATTGGACAACGTTATT GAAAGGCATAGTCGGTATGGTCATGCCACAAGGCTTGCTGTTGAGGCTTGGGGTTTGAAG AACTGCACTCAGAAGTCAGAATGGTTTAGTAATACCGTCACGGCAGTGGTGGTACCGCCT CATATTGACAGCACACAAGTTGTGAGGCAAGCCTGGAAGAAGTACAACTTAAGCCTTGGC CTTGGACTCAACAAAGTTGCTGGAAAAGTCTTCCGAAATGGGCCATCTTGGGGCACCTCA ATGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q56YA5 |
Definition |
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana |
Align length |
174 |
Score (bit) |
317.0 |
E-value |
2.0e-86 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957100|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_H17, 5' (544 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arab... 317 2e-86 sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyph... 187 4e-47 sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Meth... 171 2e-42 sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=... 107 4e-23 sp|P84187|SGAT_MAIZE Serine--glyoxylate aminotransferase (Fragme... 96 1e-19 sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synec... 96 1e-19 sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anaba... 94 6e-19 sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus ... 76 1e-13 sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyo... 74 6e-13 sp|P41689|SPYA_FELCA Serine--pyruvate aminotransferase, mitochon... 70 7e-12 sp|Q5RDP0|SPYA_PONAB Serine--pyruvate aminotransferase OS=Pongo ... 66 1e-10 sp|P21549|SPYA_HUMAN Serine--pyruvate aminotransferase OS=Homo s... 65 2e-10 sp|P09139|SPYA_RAT Serine--pyruvate aminotransferase, mitochondr... 63 1e-09 sp|P31029|SPYA_CALJA Serine--pyruvate aminotransferase, mitochon... 60 5e-09 sp|P31030|SPYA_RABIT Serine--pyruvate aminotransferase OS=Orycto... 58 3e-08 sp|P43567|AGX1_YEAST Alanine--glyoxylate aminotransferase 1 OS=S... 54 4e-07 sp|Q2T3K6|PHNW_BURTA 2-aminoethylphosphonate--pyruvate transamin... 52 2e-06 sp|Q63NF6|PHNW_BURPS 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|A3NGW6|PHNW_BURP6 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|Q3JH97|PHNW_BURP1 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|A3P2G7|PHNW_BURP0 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|A1UZE5|PHNW_BURMS 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|Q62CM5|PHNW_BURMA 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|A2S233|PHNW_BURM9 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|A3MCV7|PHNW_BURM7 2-aminoethylphosphonate--pyruvate transamin... 51 3e-06 sp|O35423|SPYA_MOUSE Serine--pyruvate aminotransferase, mitochon... 50 7e-06 sp|Q1BQZ3|PHNW_BURCA 2-aminoethylphosphonate--pyruvate transamin... 47 6e-05 sp|Q39AP8|PHNW1_BURS3 2-aminoethylphosphonate--pyruvate transami... 44 7e-04 sp|Q46NS0|PHNW2_RALEJ 2-aminoethylphosphonate--pyruvate transami... 43 0.001 sp|Q13P97|PHNW2_BURXL 2-aminoethylphosphonate--pyruvate transami... 42 0.002
>sp|Q56YA5|SGAT_ARATH Serine--glyoxylate aminotransferase OS=Arabidopsis thaliana GN=AGT1 PE=1 SV=2 Length = 401
Score = 317 bits (813), Expect = 2e-86 Identities = 149/174 (85%), Positives = 165/174 (94%) Frame = +1
Query: 1 GVSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWN 180 GVSSICALDFRMDEW +DVALTGSQKALSLPTGLGIVCASPKALEA+KT+KSL+VFFDWN Sbjct: 176 GVSSICALDFRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEATKTSKSLKVFFDWN 235
Query: 181 DYLRFYKMGTYWPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLK 360 DYL+FYK+GTYWPYTPS QLLYGLRAALDLIFEEGL+N+I RH+R G ATRLAVEAWGLK Sbjct: 236 DYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENIIARHARLGKATRLAVEAWGLK 295
Query: 361 NCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 NCTQK EW SNTVTAV+VPPHID +++VR+AW++YNLSLGLGLNKVAGKVFR G Sbjct: 296 NCTQKEEWISNTVTAVMVPPHIDGSEIVRRAWQRYNLSLGLGLNKVAGKVFRIG 349
>sp|O08374|SGAA_HYPME Serine--glyoxylate aminotransferase OS=Hyphomicrobium methylovorum GN=sgaA PE=3 SV=2 Length = 405
Score = 187 bits (474), Expect = 4e-47 Identities = 93/176 (52%), Positives = 124/176 (70%), Gaps = 2/176 (1%) Frame = +1
Query: 1 GVSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEA--SKTAKSLRVFFD 174 GVSS+ +LD RM EW +D ++GSQK LPTGLGI+ S KAL+ SK + R FF Sbjct: 171 GVSSVGSLDMRMGEWGVDCCVSGSQKGFMLPTGLGILAVSQKALDINKSKNGRMNRCFFS 230
Query: 175 WNDYLRFYKMGTYWPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWG 354 + D ++ G ++PYTP++QLL GLR +LDL+F EGLDNV RH+R R AV+AWG Sbjct: 231 FEDMIKTNDQG-FFPYTPATQLLRGLRTSLDLLFAEGLDNVFARHTRLASGVRAAVDAWG 289
Query: 355 LKNCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 LK C ++ +W+S+TV+A++VP IDS + + A+ +YN S GLGLNKVAGKVFR G Sbjct: 290 LKLCAKEPKWYSDTVSAILVPEGIDSNAITKTAYYRYNTSFGLGLNKVAGKVFRIG 345
>sp|P55819|SGAA_METEX Serine--glyoxylate aminotransferase OS=Methylobacterium extorquens GN=sgaA PE=3 SV=1 Length = 379
Score = 171 bits (433), Expect = 2e-42 Identities = 84/163 (51%), Positives = 113/163 (69%), Gaps = 5/163 (3%) Frame = +1
Query: 49 IDVALTGSQKALSLPTGLGIVCASPKALEAS-----KTAKSLRVFFDWNDYLRFYKMGTY 213 +D A+ GSQK L LP GLG++C S KAL+A+ + + RV+FDW D + G Y Sbjct: 169 VDCAIAGSQKGLMLPAGLGVICVSQKALKAAEGQSGRNDRLARVYFDWEDQKKQNPTG-Y 227
Query: 214 WPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLKNCTQKSEWFSN 393 +PYTP LLYGLR AL +FEEGL+NV RH+ G ATR AV AWGLK C + EW S+ Sbjct: 228 FPYTPPLPLLYGLREALACLFEEGLENVYHRHAVLGEATRQAVAAWGLKTCAKSPEWNSD 287
Query: 394 TVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 TVTA++ P +D+ ++++ A+ +YNL+LG GL++VAGKVFR G Sbjct: 288 TVTAILAPEGVDAAKIIKHAYVRYNLALGAGLSQVAGKVFRIG 330
>sp|Q58369|Y959_METJA Uncharacterized aminotransferase MJ0959 OS=Methanocaldococcus jannaschii GN=MJ0959 PE=3 SV=1 Length = 385
Score = 107 bits (267), Expect = 4e-23 Identities = 65/174 (37%), Positives = 94/174 (54%), Gaps = 1/174 (0%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEA-SKTAKSLRVFFDWN 180 VSS+ +D++ ID+ +TGSQK L+ P GL + S KA E K + + D Sbjct: 170 VSSLGGDYVNVDKFHIDICVTGSQKCLAAPPGLAAITVSEKAWEVIKKNDDKVGFYLDLL 229
Query: 181 DYLRFYKMGTYWPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLK 360 Y ++Y+ PYTPS L Y L ALDL+ EEG++N ++RH R ATR +EA G++ Sbjct: 230 AYKKYYEEKKQTPYTPSVNLTYALNVALDLVLEEGIENRVKRHERLAKATRAGLEAMGIE 289
Query: 361 NCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 K S TVT+ P I+ ++ KYN+ + G +AGK+FR G Sbjct: 290 -LFAKERARSVTVTSAKYPEGIEDSKFRGILSNKYNIVVAGGQKHLAGKIFRIG 342
>sp|P84187|SGAT_MAIZE Serine--glyoxylate aminotransferase (Fragments) OS=Zea mays PE=1 SV=1 Length = 136
Score = 95.9 bits (237), Expect = 1e-19 Identities = 70/163 (42%), Positives = 75/163 (46%), Gaps = 1/163 (0%) Frame = +1
Query: 34 MDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWNDYLRFYKMGTY 213 MDEW +DVALTGSQKALS PTG+G+VCASP RVFFDW DYLR TY Sbjct: 47 MDEWGVDVALTGSQKALSFPTGMGLVCASP------------RVFFDWKDYLR-----TY 89
Query: 214 WPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLKNCTQKSEWFSN 393 W Y ALDL LAVEAWGL N Sbjct: 90 WHYDQ----------ALDL--------------------ELAVEAWGLSN---------- 109
Query: 394 TVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVA-GKVFRN 519 +YNLSLGLGLNKVA GKVFR+ Sbjct: 110 ----------------------RYNLSLGLGLNKVAGGKVFRD 130
>sp|P14776|DHSS_SYNP1 Soluble hydrogenase, small subunit OS=Synechococcus sp. (strain PCC 6716) PE=3 SV=1 Length = 384
Score = 95.9 bits (237), Expect = 1e-19 Identities = 60/173 (34%), Positives = 95/173 (54%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWND 183 V+S+ A+ +DEW +DV +GSQK +P GL V SPKA EA KTA + + D Sbjct: 170 VTSLGAVSVPIDEWGLDVVGSGSQKGYMIPPGLAFVSVSPKAWEAYKTATLPKFYLDLGK 229
Query: 184 YLRFYKMGTYWPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLKN 363 Y + T P+TP L + L+ AL+++ EGL+ + +RH R ATR A++A L Sbjct: 230 YRKDAAKHT-TPFTPPVNLFFALKTALEMMQAEGLEAIFQRHQRLMQATRAAMKALNLPL 288
Query: 364 CTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 S S +TA V P +++ + K+++++L G + + G++FR G Sbjct: 289 YAADS-CASPAITA-VAPQGVEAENIRSLMKKRFDIALAGGQDHLKGQIFRIG 339
>sp|P16421|DHSS_ANACY Soluble hydrogenase 42 kDa subunit OS=Anabaena cylindrica PE=1 SV=1 Length = 383
Score = 93.6 bits (231), Expect = 6e-19 Identities = 59/173 (34%), Positives = 95/173 (54%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWND 183 V+S+ A + +D +DV +GSQK +P GLG V SPKA EA KTAK + + D Sbjct: 170 VTSLGAYNVPVDALGLDVVASGSQKGYMIPPGLGFVSVSPKAWEAYKTAKLPKYYLDLGK 229
Query: 184 YLRFYKMGTYWPYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRLAVEAWGLKN 363 Y + T P+TP L+ L L ++ +EGL+++ RH R +ATR A++A L Sbjct: 230 YRKATAKNT-TPFTPPVNLMVALHTTLGMMKKEGLESIFTRHERQKNATRAAMKALNLP- 287
Query: 364 CTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFRNG 522 E S +TAV P +++ ++ K+++++L G + ++ K+FR G Sbjct: 288 LFAADECASPAITAVAT-PGMEADKIRSLMKKRFDIALAGGQDHLSNKIFRVG 339
>sp|O32148|PUCG_BACSU Purine catabolism protein pucG OS=Bacillus subtilis GN=pucG PE=2 SV=1 Length = 416
Score = 75.9 bits (185), Expect = 1e-13 Identities = 54/193 (27%), Positives = 90/193 (46%), Gaps = 20/193 (10%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGI---------VCASPKALEASKTAKS 156 V++I + ++DEW ID A+ G+QK LS+P+G+ V A+ K +E ++ Sbjct: 174 VATIGGCEVKVDEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQA 233
Query: 157 LRVFFDWN-----DYLRFYKMGTYWP------YTPSSQLLYGLRAALDLIFEEGLDNVIE 303 R N +Y ++ YW +T ++ +LY LR + L+ EEGL+ E Sbjct: 234 DRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFE 293
Query: 304 RHSRYGHATRLAVEAWGLKNCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGL 483 RH + A ++A GL+ S VT V +P ID V ++ + + Sbjct: 294 RHRHHEAALAAGIKAMGLRLFGDDS-CKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIAS 352
Query: 484 GLNKVAGKVFRNG 522 +AGK++R G Sbjct: 353 SFGPLAGKIWRIG 365
>sp|Q54GT6|SPYA_DICDI Serine--pyruvate aminotransferase OS=Dictyostelium discoideum GN=agxt PE=3 SV=1 Length = 407
Score = 73.6 bits (179), Expect = 6e-13 Identities = 59/202 (29%), Positives = 88/202 (43%), Gaps = 29/202 (14%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWND 183 V+++ + +D+W ID TG+QK LS P G+ + S A T K+ N Sbjct: 181 VAALGGVPVFVDDWKIDACYTGTQKCLSGPPGISPLTFSNAACHKIATRKTPVA----NW 236
Query: 184 YLRFYKMGTYW-----------------------PYTPSSQLLYGLRAALDLIFEEGLDN 294 YL +G YW +T + LLY LR AL L+ EEGLDN Sbjct: 237 YLDCNLLGGYWCPEFNLADGTIAKEEKSTIPKRYHHTTPANLLYSLREALVLLVEEGLDN 296
Query: 295 VIERHSRYGHATRLAVEAWGLK------NCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAW 456 V +RH +E+ GLK N + ++T V +P +D V++ Sbjct: 297 VWKRHQDAAILLYAGLESLGLKPFVPQLNEAPEKGGRLFSLTTVNIPDGVDGKMVMKYLL 356
Query: 457 KKYNLSLGLGLNKVAGKVFRNG 522 +N+ + G+ AGKV+R G Sbjct: 357 DNFNIEIAGGIGAFAGKVWRIG 378
>sp|P41689|SPYA_FELCA Serine--pyruvate aminotransferase, mitochondrial OS=Felis silvestris catus GN=AGXT PE=2 SV=1 Length = 414
Score = 70.1 bits (170), Expect = 7e-12 Identities = 55/182 (30%), Positives = 78/182 (42%), Gaps = 9/182 (4%) Frame = +1
Query: 4 VSSICALDFRMDEWCIDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSLRVFFDWND 183 V+S+C MD+ IDV +GSQK L+ P G ++ S KA T K+ V F Sbjct: 207 VASLCGTPIYMDQQGIDVLYSGSQKVLNSPPGTSLISFSDKAKNKIYTRKTKPVSF---- 262
Query: 184 YLRFYKMGTYW---------PYTPSSQLLYGLRAALDLIFEEGLDNVIERHSRYGHATRL 336 YL + W +T LY LR +L LI E+GL+N +H Sbjct: 263 YLDMKWLANIWGCDGKPRIYHHTTPVVSLYSLRESLALIAEQGLENSWRQHREVTAYLHG 322
Query: 337 AVEAWGLKNCTQKSEWFSNTVTAVVVPPHIDSTQVVRQAWKKYNLSLGLGLNKVAGKVFR 516 ++ GL+ + TVT V VP D +V +++ + GL GKV R Sbjct: 323 RLQGLGLQLFVKDPALRLPTVTTVAVPAGYDWRDIVNYVMDHFDIEITGGLGPSMGKVLR 382
Query: 517 NG 522 G Sbjct: 383 IG 384
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3S2I1 |
Definition |
tr|Q3S2I1|Q3S2I1_SPIPO Serine-glyoxylate aminotransferase OS=Spirodela polyrrhiza |
Align length |
174 |
Score (bit) |
319.0 |
E-value |
7.0e-86 |
Report |
|