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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957130
Clone id TST39A01NGRL0027_I23
Library
Length 575
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_I23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTTTTTTTTTTTTTTTTTTTTTTTTAAATGGAATGAAACAAGGGTCTGATATTGCTTGTA
CATTGATACTTTGTATGTACTCCAAGGTGTGTGTGTGGACACTTAAAAAGTATAGATTAC
ATGATGTGAAGAACGTGTAAAGGCAAAGTCTCCTAAAGATCAAAGCTTATAGAATGAAAA
TCAAATGCAACCTCCTTTGCAGTTACAGGAAACAAAAATTTGGAGTGGCTTCTACATTCG
CTCGCAACGTCCTCTTGCATGCTTTGCGATCCCGAGACTAGGACACCCACACTTTGTCCT
TTGTATTTGTTGGAAAGGTGGTTGAAGACATCTTTCCAATCAGGTCGGCAACAAAGATGG
AGGTCACCATTCCAAGGAGAGCCTCCTTCACATCCAACATTTGCTTCATTATCATAGAAT
TCTTGCACGGGGTAGTTTGTGGGAGAGTTAATTGTGCTATGGCCCTTTGGTTGAATCAAA
GATGTATTTTCTTTTTGTGTCTTATTATGGATCAACCAGATGATTAGTAAAGCACCACCG
AACAAAATGATTCCCAAGAGCATGCATATCACCAC
■■Homology search results ■■ -
sp_hit_id O60423
Definition sp|O60423|AT8B3_HUMAN Probable phospholipid-transporting ATPase IK OS=Homo sapiens
Align length 63
Score (bit) 30.8
E-value 4.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957130|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_I23, 5'
         (550 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O60423|AT8B3_HUMAN Probable phospholipid-transporting ATPase ...    31   4.6  
sp|Q24210|CAKI_DROME Calcium/calmodulin-dependent protein kinase...    30   6.0  
sp|Q032D0|PHNC_LACLS Phosphonates import ATP-binding protein phn...    30   7.8  

>sp|O60423|AT8B3_HUMAN Probable phospholipid-transporting ATPase IK
            OS=Homo sapiens GN=ATP8B3 PE=2 SV=3
          Length = 1310

 Score = 30.8 bits (68), Expect = 4.6
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +2

Query: 266  TLSFVFVGKVVEDIFPIRSATKMEVTIPRRASFTSNICFIIIEFLHGVVCGRVNCAMALW 445
            TL  +++G   +D+   +S  K E+ +  +     N    +    HGV    VN  M LW
Sbjct: 1050 TLPVLYIGLFEQDVSAEQSLEKPELYVVGQKDELFNYWVFVQAIAHGVTTSLVNFFMTLW 1109

Query: 446  LNQ 454
            +++
Sbjct: 1110 ISR 1112


>sp|Q24210|CAKI_DROME Calcium/calmodulin-dependent protein kinase
           OS=Drosophila melanogaster GN=Caki PE=1 SV=4
          Length = 898

 Score = 30.4 bits (67), Expect = 6.0
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 6/38 (15%)
 Frame = +1

Query: 310 SNQVGNKDGGHHSKESLL------HIQHLLHYHRILAR 405
           S   GN  GG ++KE L+      H+Q LLH H ++AR
Sbjct: 418 STSGGNSLGGKYAKEELMRLLAAPHMQALLHSHDVVAR 455


>sp|Q032D0|PHNC_LACLS Phosphonates import ATP-binding protein phnC
           OS=Lactococcus lactis subsp. cremoris (strain SK11)
           GN=phnC PE=3 SV=1
          Length = 246

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/31 (48%), Positives = 22/31 (70%)
 Frame = -1

Query: 190 LFPVTAKEVAFDFHSISFDL*ETLPLHVLHI 98
           L PVTAKEV  DF  I+ +L +T+ L++ H+
Sbjct: 176 LDPVTAKEVMDDFKRINEELNKTILLNIHHV 206
tr_hit_id A7R0A2
Definition tr|A7R0A2|A7R0A2_VITVI Chromosome undetermined scaffold_301, whole genome shotgun sequence OS=Vitis vinifera
Align length 65
Score (bit) 34.7
E-value 3.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957130|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_I23, 5'
         (550 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7R0A2|A7R0A2_VITVI Chromosome undetermined scaffold_301, who...    35   3.4  
tr|Q8ENZ2|Q8ENZ2_OCEIH Bacillopeptidase F OS=Oceanobacillus ihey...    33   10.0 

>tr|A7R0A2|A7R0A2_VITVI Chromosome undetermined scaffold_301, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00011355001 PE=4 SV=1
          Length = 735

 Score = 34.7 bits (78), Expect = 3.4
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 325 CRPDWKDVFNHLSNKYKXXXXXXXXXXXXXXQEDVASECRSHSKFLFPVTAKEVAFDFHS 146
           CRPD+K++F  +S ++               Q  VA ECRS +         +  F F+S
Sbjct: 674 CRPDFKEIFGSISERWGHVDVGVIVCGPPTLQASVAKECRSQN---IRRRCHDPIFHFNS 730

Query: 145 ISFDL 131
            SFDL
Sbjct: 731 HSFDL 735


>tr|Q8ENZ2|Q8ENZ2_OCEIH Bacillopeptidase F OS=Oceanobacillus
           iheyensis GN=OB2331 PE=4 SV=1
          Length = 1454

 Score = 33.1 bits (74), Expect = 10.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
 Frame = -1

Query: 463 NTSLIQPKGHSTINSPTNYP------VQEFYDNEANVGCEGGSPWNGDL 335
           NT+L  P G  +I  P NYP        +  D  A+   +G SP+ GD+
Sbjct: 387 NTTLFNPGGPGSIAVPANYPESFATGATDINDGLASFSLQGPSPYEGDI 435