DK957151 |
Clone id |
TST39A01NGRL0027_J20 |
Library |
TST39 |
Length |
483 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_J20. 5' end sequence. |
Accession |
DK957151 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1464Contig1 |
Sequence |
CTTCGAAGAGGCAACGAAAGATCGAGCCAGCAGTCGTCTTTCGCACATCGCCCAGCATGA TTCACTTTGTGCTGCTCATCAGTCGCCAAGGCAAAGTTCGCCTCACGAAATGGTATTCAC CATATACACAGAAAGAGAGGCAGAAGGCTATTCGAGAACTTAGTGGCCTCATACTAACGA GGGGACCAAAGCTTTGCAATTTTGTTGAATGGAGAGGTCTAAAGGTTGTTTATAAACGGT ATGCCAGCCTTTATTTCTGCATGTGCATCGATCCAGAGGATAATGAGTTGGAATGCCTTG AAATCATTCATCACTTTGTCGAGATCCTTGATCGATACTTTGGCAATGTTTGTGAATTGG ACCTGATTTTCAATTTCCACAAGGCATACTATATTCTTGACGAGGTTTTACTTGCTGGAG AATTACAAGAAACTAGTAAAAAATCTGTAGCTCGTGTTATTGCAGCACAGGACACGCTGG TGG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
B0G185 |
Definition |
sp|B0G185|AP1S2_DICDI AP-1 complex subunit sigma-2 OS=Dictyostelium discoideum |
Align length |
140 |
Score (bit) |
223.0 |
E-value |
4.0e-58 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9THE0 |
Definition |
tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
142 |
Score (bit) |
274.0 |
E-value |
1.0e-72 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957151|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_J20, 5' (483 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella paten... 274 1e-72 tr|A9ST45|A9ST45_PHYPA Predicted protein (Fragment) OS=Physcomit... 272 5e-72 tr|P93078|P93078_CAMAC Ap19 protein OS=Camptotheca acuminata GN=... 266 5e-70 tr|A5C1I3|A5C1I3_VITVI Putative uncharacterized protein OS=Vitis... 266 5e-70 tr|Q10CG6|Q10CG6_ORYSJ Adapter-related protein complex 1 sigma 1... 265 1e-69 tr|B6T1U4|B6T1U4_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays ... 264 2e-69 tr|A7QG23|A7QG23_VITVI Chromosome undetermined scaffold_91, whol... 264 2e-69 tr|A7QNV8|A7QNV8_VITVI Chromosome chr1 scaffold_135, whole genom... 263 3e-69 tr|Q94GI1|Q94GI1_ORYSA Putative clathrin assembly protein (Clath... 263 4e-69 tr|Q10CG5|Q10CG5_ORYSJ Os03g0783700 protein OS=Oryza sativa subs... 263 4e-69 tr|B8AKW4|B8AKW4_ORYSI Putative uncharacterized protein OS=Oryza... 263 4e-69 tr|B7FHG4|B7FHG4_MEDTR Putative uncharacterized protein OS=Medic... 263 4e-69 tr|O23685|O23685_ARATH Clathrin assembly protein AP19 homolog OS... 262 7e-69 tr|Q8LEZ8|Q8LEZ8_ARATH Clathrin assembly small subunit protein A... 261 1e-68 tr|O24611|O24611_ARATH Clathrin assembly protein AP19 homolog OS... 259 6e-68 tr|A3ANC1|A3ANC1_ORYSJ Putative uncharacterized protein OS=Oryza... 257 2e-67 tr|A9PA09|A9PA09_POPTR Putative uncharacterized protein OS=Popul... 255 7e-67 tr|B6U542|B6U542_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays ... 249 5e-65 tr|Q7XZG1|Q7XZG1_ORYSJ Os03g0811300 protein OS=Oryza sativa subs... 247 2e-64 tr|Q8III7|Q8III7_PLAF7 Clathrin assembly protein AP19, putative ... 219 5e-56 tr|Q4Z0X3|Q4Z0X3_PLABE Clathrin assembly protein AP19, putative ... 219 5e-56 tr|A5K4J4|A5K4J4_PLAVI Clathrin assembly protein AP19, putative ... 219 5e-56 tr|B7FML5|B7FML5_MEDTR Putative uncharacterized protein OS=Medic... 218 2e-55 tr|B3L4Y4|B3L4Y4_PLAKH Clathrin assembly protein AP19, putative ... 216 4e-55 tr|Q7RE52|Q7RE52_PLAYO Clathrin assembly protein AP19, small sub... 214 2e-54 tr|Q3E9R0|Q3E9R0_ARATH Uncharacterized protein At4g35410.1 OS=Ar... 211 1e-53 tr|Q5DW58|Q5DW58_BOTBR Sigma1 subunit of AP-1 complex of clathri... 205 8e-52 tr|Q5CVH4|Q5CVH4_CRYPV Aps1p/AP17 like clathrin adaptor protein ... 204 1e-51 tr|Q5CEK9|Q5CEK9_CRYHO Clathrin assembly protein AP19 OS=Cryptos... 204 2e-51 tr|A8IZV8|A8IZV8_CHLRE Sigma1-Adaptin OS=Chlamydomonas reinhardt... 201 1e-50
>tr|A9THE0|A9THE0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_222350 PE=4 SV=1 Length = 161
Score = 274 bits (701), Expect = 1e-72 Identities = 131/142 (92%), Positives = 138/142 (97%) Frame = +3
Query: 57 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 236 MIHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+IL+RGPKLCNF+EWRGLKVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILSRGPKLCNFLEWRGLKVVYK 60
Query: 237 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 416 RYASLYFCMC+D +DNELE LEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVL+A Sbjct: 61 RYASLYFCMCVDADDNELETLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLIA 120
Query: 417 GELQETSKKSVARVIAAQDTLV 482 GELQETSKKSVARVIAAQDTL+ Sbjct: 121 GELQETSKKSVARVIAAQDTLI 142
>tr|A9ST45|A9ST45_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_134897 PE=4 SV=1 Length = 161
Score = 272 bits (696), Expect = 5e-72 Identities = 130/141 (92%), Positives = 137/141 (97%) Frame = +3
Query: 60 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 239 IHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+IL+RGPKLCNF+EWRGLKVVYKR Sbjct: 2 IHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGMILSRGPKLCNFLEWRGLKVVYKR 61
Query: 240 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 419 YASLYFCMC+D +DNELE LEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVL+AG Sbjct: 62 YASLYFCMCVDTDDNELETLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLIAG 121
Query: 420 ELQETSKKSVARVIAAQDTLV 482 ELQETSKKSVARVIAAQDTL+ Sbjct: 122 ELQETSKKSVARVIAAQDTLI 142
>tr|P93078|P93078_CAMAC Ap19 protein OS=Camptotheca acuminata GN=ap19 PE=2 SV=1 Length = 161
Score = 266 bits (679), Expect = 5e-70 Identities = 127/142 (89%), Positives = 137/142 (96%) Frame = +3
Query: 57 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 236 MIHFVLLISRQGKVRLTKWYSP+TQKER K IRELSGLILTRGPKLCNFVEWRG KVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPHTQKERNKVIRELSGLILTRGPKLCNFVEWRGFKVVYK 60
Query: 237 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 416 RYASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 417 GELQETSKKSVARVIAAQDTLV 482 GELQE+SKK+VAR+IAAQD+LV Sbjct: 121 GELQESSKKTVARLIAAQDSLV 142
>tr|A5C1I3|A5C1I3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_017884 PE=4 SV=1 Length = 161
Score = 266 bits (679), Expect = 5e-70 Identities = 127/142 (89%), Positives = 137/142 (96%) Frame = +3
Query: 57 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 236 MIHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+ILTRGPKLCNFVEWRG KVVYK Sbjct: 1 MIHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYK 60
Query: 237 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 416 RYASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIA 120
Query: 417 GELQETSKKSVARVIAAQDTLV 482 GELQE+SKK+VAR+IAAQD+LV Sbjct: 121 GELQESSKKTVARLIAAQDSLV 142
>tr|Q10CG6|Q10CG6_ORYSJ Adapter-related protein complex 1 sigma 1B subunit, putative, expressed OS=Oryza sativa subsp. japonica GN=LOC_Os03g57040 PE=4 SV=1 Length = 161
Score = 265 bits (676), Expect = 1e-69 Identities = 126/142 (88%), Positives = 137/142 (96%) Frame = +3
Query: 57 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 236 MI+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEW+G KVVY+ Sbjct: 1 MINFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYR 60
Query: 237 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 416 RYASLYFCMCID EDNELE LEIIHHFVE+LDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIA 120
Query: 417 GELQETSKKSVARVIAAQDTLV 482 GELQE+SKK+VAR+IAAQD+LV Sbjct: 121 GELQESSKKNVARLIAAQDSLV 142
>tr|B6T1U4|B6T1U4_MAIZE AP-1 complex subunit sigma-2 OS=Zea mays PE=2 SV=1 Length = 161
Score = 264 bits (674), Expect = 2e-69 Identities = 127/142 (89%), Positives = 137/142 (96%) Frame = +3
Query: 57 MIHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYK 236 MI+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEWRG KVVY+ Sbjct: 1 MINFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWRGYKVVYR 60
Query: 237 RYASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLA 416 RYASLYFCMCID EDNELE LEII+HFVEILDRYFG+VCELDLIFNFHKAYYILDE+L+A Sbjct: 61 RYASLYFCMCIDAEDNELEVLEIIYHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIA 120
Query: 417 GELQETSKKSVARVIAAQDTLV 482 GELQE+SKK+VAR+IAAQD+LV Sbjct: 121 GELQESSKKNVARLIAAQDSLV 142
>tr|A7QG23|A7QG23_VITVI Chromosome undetermined scaffold_91, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00037672001 PE=4 SV=1 Length = 167
Score = 264 bits (674), Expect = 2e-69 Identities = 126/141 (89%), Positives = 136/141 (96%) Frame = +3
Query: 60 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 239 IHFVLLISRQGKVRLTKWYSPYTQKER K IRELSG+ILTRGPKLCNFVEWRG KVVYKR Sbjct: 8 IHFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 67
Query: 240 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 419 YASLYFCMCID +DNELE LEIIHH+VEILDRYFG+VCELDLIFNFHKAYYILDE+L+AG Sbjct: 68 YASLYFCMCIDQDDNELEVLEIIHHYVEILDRYFGSVCELDLIFNFHKAYYILDELLIAG 127
Query: 420 ELQETSKKSVARVIAAQDTLV 482 ELQE+SKK+VAR+IAAQD+LV Sbjct: 128 ELQESSKKTVARLIAAQDSLV 148
>tr|A7QNV8|A7QNV8_VITVI Chromosome chr1 scaffold_135, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00002691001 PE=4 SV=1 Length = 167
Score = 263 bits (672), Expect = 3e-69 Identities = 125/141 (88%), Positives = 136/141 (96%) Frame = +3
Query: 60 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 239 IHFVLLISRQGKVRLTKWYSPY+QKER K IRELSG+ILTRGPKLCNFVEWRG KVVYKR Sbjct: 8 IHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGYKVVYKR 67
Query: 240 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 419 YASLYFCMCID +DNELE LEIIHHFVEILDRYFG+VCELDLIFNFHKAYY+LDE+L+AG Sbjct: 68 YASLYFCMCIDQDDNELEVLEIIHHFVEILDRYFGSVCELDLIFNFHKAYYVLDELLIAG 127
Query: 420 ELQETSKKSVARVIAAQDTLV 482 ELQE+SKK+VAR+IAAQD+LV Sbjct: 128 ELQESSKKTVARLIAAQDSLV 148
>tr|Q94GI1|Q94GI1_ORYSA Putative clathrin assembly protein (Clathrin assembly protein AP19-like protein) OS=Oryza sativa GN=OSJNBb0093E13.11 PE=2 SV=1 Length = 182
Score = 263 bits (671), Expect = 4e-69 Identities = 125/141 (88%), Positives = 136/141 (96%) Frame = +3
Query: 60 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 239 I+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEW+G KVVY+R Sbjct: 23 INFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYRR 82
Query: 240 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 419 YASLYFCMCID EDNELE LEIIHHFVE+LDRYFG+VCELDLIFNFHKAYYILDE+L+AG Sbjct: 83 YASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 142
Query: 420 ELQETSKKSVARVIAAQDTLV 482 ELQE+SKK+VAR+IAAQD+LV Sbjct: 143 ELQESSKKNVARLIAAQDSLV 163
>tr|Q10CG5|Q10CG5_ORYSJ Os03g0783700 protein OS=Oryza sativa subsp. japonica GN=Os03g0783700 PE=4 SV=1 Length = 182
Score = 263 bits (671), Expect = 4e-69 Identities = 125/141 (88%), Positives = 136/141 (96%) Frame = +3
Query: 60 IHFVLLISRQGKVRLTKWYSPYTQKERQKAIRELSGLILTRGPKLCNFVEWRGLKVVYKR 239 I+FVLLISRQGKVRLTKWYSPYTQKER K IRELSGLILTRGPKLCNFVEW+G KVVY+R Sbjct: 23 INFVLLISRQGKVRLTKWYSPYTQKERTKVIRELSGLILTRGPKLCNFVEWKGYKVVYRR 82
Query: 240 YASLYFCMCIDPEDNELECLEIIHHFVEILDRYFGNVCELDLIFNFHKAYYILDEVLLAG 419 YASLYFCMCID EDNELE LEIIHHFVE+LDRYFG+VCELDLIFNFHKAYYILDE+L+AG Sbjct: 83 YASLYFCMCIDAEDNELEVLEIIHHFVEVLDRYFGSVCELDLIFNFHKAYYILDEILIAG 142
Query: 420 ELQETSKKSVARVIAAQDTLV 482 ELQE+SKK+VAR+IAAQD+LV Sbjct: 143 ELQESSKKNVARLIAAQDSLV 163
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