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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957155
Clone id TST39A01NGRL0027_J24
Library
Length 570
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_J24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGAACCCAGCCAAATAATAGCCTCTGCTTTGTTCTACGAGGGGAAGGGTAATGGTGGAA
GCTACAATAGCTAGGCTATTCAAATCAGACTTTCTCCTCTCCCCTGACCATTCCCGCTGC
TACAAAAATTGTCAATTCTAAGATCTCTGTCTCTGCTTGCTCCTGTCTTCTGTGTCTCAT
CATTTCATCACGCACTGTCACACGCGCACGGGCGCACTCATATCCCTTGTTCATATGCTT
CTCTTGTAGCAAGAGTGGGTCCTTGCTCTACGCTTTCGACAATCAGCTGAACCCATTAAA
GAAGTGATAGGAAGGCTTGCGAGCATGGCGTTCTTCTCAAGGTTTTTGTGAGGTTTGAAG
GTCCTTCCAAAGGCACGAGCTTAGCAGTGTAAAGAGTGTTGCCCATTTGGATCAAAGTTA
CGAGTGTTGCACACGTGCTGTGCTGATTGGAGGGCATGGGAGGTGTAATTTCATACGCAC
AGCAAGAGTGAAAGCTATAACAACAAAGCCTCAGATCTCCCTGCTGGTTTGTGTAAGAGG
AGGAGCCATGGCTACATCAGCATTTCGCTC
■■Homology search results ■■ -
sp_hit_id Q923Y0
Definition sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus norvegicus
Align length 77
Score (bit) 35.4
E-value 0.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957155|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_J24, 5'
         (570 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus...    35   0.20 
sp|Q5QD05|TAA8C_MOUSE Trace amine-associated receptor 8c OS=Mus ...    35   0.20 
sp|Q923Y3|TAA8B_RAT Trace amine-associated receptor 8b OS=Rattus...    35   0.20 
sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b OS=Mus ...    35   0.20 
sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a OS=Rattus...    35   0.20 
sp|Q5QD07|TAA8A_MOUSE Trace amine-associated receptor 8a OS=Mus ...    35   0.20 
sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 OS=Rattus ...    33   1.0  
sp|Q5W8W0|TAAR6_PANTR Trace amine-associated receptor 6 OS=Pan t...    33   1.0  
sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 OS=Homo ...    33   1.0  
sp|O13356|CHS1_CRYNV Chitin synthase 1 OS=Cryptococcus neoforman...    33   1.3  
sp|Q70KF0|DOIAD_MICEC 2-deoxy-scyllo-inosamine dehydrogenase OS=...    32   2.2  
sp|Q969N4|TAAR8_HUMAN Trace amine-associated receptor 8 OS=Homo ...    32   2.9  
sp|Q5QD13|TAAR6_MOUSE Trace amine-associated receptor 6 OS=Mus m...    31   3.8  
sp|Q9TL07|NU2C_NEPOL NAD(P)H-quinone oxidoreductase chain 2, chl...    31   4.9  
sp|Q923X5|TAA7D_RAT Trace amine-associated receptor 7d OS=Rattus...    30   6.5  
sp|Q5QD08|TAA7F_MOUSE Trace amine-associated receptor 7f OS=Mus ...    30   8.5  
sp|Q5QD09|TAA7E_MOUSE Trace amine-associated receptor 7e OS=Mus ...    30   8.5  

>sp|Q923Y0|TAA8C_RAT Trace amine-associated receptor 8c OS=Rattus
           norvegicus GN=Taar8c PE=3 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD05|TAA8C_MOUSE Trace amine-associated receptor 8c OS=Mus
           musculus GN=Taar8c PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923Y3|TAA8B_RAT Trace amine-associated receptor 8b OS=Rattus
           norvegicus GN=Taar8b PE=3 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD06|TAA8B_MOUSE Trace amine-associated receptor 8b OS=Mus
           musculus GN=Taar8b PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923X9|TAA8A_RAT Trace amine-associated receptor 8a OS=Rattus
           norvegicus GN=Taar8a PE=3 SV=2
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDTFCSLHSCC 110


>sp|Q5QD07|TAA8A_MOUSE Trace amine-associated receptor 8a OS=Mus
           musculus GN=Taar8a PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 0.20
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 OS=Rattus
           norvegicus GN=Taar6 PE=3 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/77 (28%), Positives = 35/77 (45%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LA   F+     G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLIASLACADFWV----GVSVMPFSMVRSI 94

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|Q5W8W0|TAAR6_PANTR Trace amine-associated receptor 6 OS=Pan
           troglodytes GN=TAAR6 PE=3 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   ++  LA     + FL G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLVASLAC----ADFLVGVTVMPFSMVRTV 94

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|Q96RI8|TAAR6_HUMAN Trace amine-associated receptor 6 OS=Homo
           sapiens GN=TAAR6 PE=2 SV=1
          Length = 345

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 22/77 (28%), Positives = 36/77 (46%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   ++  LA     + FL G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLVASLAC----ADFLVGVTVMPFSMVRTV 94

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRSFCTFHTCC 111


>sp|O13356|CHS1_CRYNV Chitin synthase 1 OS=Cryptococcus neoformans
           var. grubii GN=CHS1 PE=3 SV=1
          Length = 1041

 Score = 32.7 bits (73), Expect = 1.3
 Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
 Frame = -3

Query: 460 PMPSNQHSTC-ATLVTLIQMGNTLYTAKLVPL--EGPSNLTKTL 338
           P+PS  HS   A L+TL Q+G  L+T  LV    EGPS++  TL
Sbjct: 438 PLPSPSHSLPNAPLITLSQIGPELFTVCLVTCYSEGPSSIRGTL 481
tr_hit_id B2RT38
Definition tr|B2RT38|B2RT38_MOUSE Trace amine-associated receptor 8C OS=Mus musculus
Align length 77
Score (bit) 35.4
E-value 2.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957155|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_J24, 5'
         (570 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2RT38|B2RT38_MOUSE Trace amine-associated receptor 8C OS=Mus...    35   2.3  
tr|B2RT24|B2RT24_MOUSE Trace amine-associated receptor 8B OS=Mus...    35   2.3  
tr|B4USZ8|B4USZ8_OTOGA Trace amine associated receptor 8 (Predic...    35   3.0  
tr|Q5QD18|Q5QD18_RAT Trace amine associated receptor 8c OS=Rattu...    35   3.9  
tr|A8CY09|A8CY09_9CHLR Beta-ketoacyl synthase (Fragment) OS=Deha...    33   8.5  
tr|B0FZ73|B0FZ73_MACMU Trace amine associated receptor 6 OS=Maca...    33   8.6  

>tr|B2RT38|B2RT38_MOUSE Trace amine-associated receptor 8C OS=Mus
           musculus GN=Taar8c PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>tr|B2RT24|B2RT24_MOUSE Trace amine-associated receptor 8B OS=Mus
           musculus GN=Taar8b PE=2 SV=1
          Length = 344

 Score = 35.4 bits (80), Expect = 2.3
 Identities = 24/77 (31%), Positives = 38/77 (49%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LAS    + FL G+ V+P +     
Sbjct: 41  GAVLAVCGNLLV---VISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSI 93

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG     LH+CC
Sbjct: 94  ESCWYFGDAFCSLHSCC 110


>tr|B4USZ8|B4USZ8_OTOGA Trace amine associated receptor 8
           (Predicted) OS=Otolemur garnettii GN=TAAR8 PE=4 SV=1
          Length = 342

 Score = 35.0 bits (79), Expect = 3.0
 Identities = 20/58 (34%), Positives = 29/58 (50%)
 Frame = +1

Query: 268 LRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QCKECCPFGSKLRVLHTCC 441
           L F+Q   P   +I  LA     + FL G+ V+P +     + C  FG+K   LH+CC
Sbjct: 57  LHFKQLHSPANFLIASLAC----ADFLVGVTVMPFSMVRSVESCWYFGAKFCTLHSCC 110


>tr|Q5QD18|Q5QD18_RAT Trace amine associated receptor 8c OS=Rattus
           norvegicus GN=Taar8c PE=3 SV=1
          Length = 344

 Score = 34.7 bits (78), Expect = 3.9
 Identities = 20/61 (32%), Positives = 29/61 (47%)
 Frame = +1

Query: 259 VLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QCKECCPFGSKLRVLHTC 438
           +  L F+Q   P   +I  LAS    + FL G+ V+P +     + C  FG     LH+C
Sbjct: 54  ISVLHFKQLHSPANFLIASLAS----ADFLVGISVMPFSMVRSIESCWYFGDTFCSLHSC 109

Query: 439 C 441
           C
Sbjct: 110 C 110


>tr|A8CY09|A8CY09_9CHLR Beta-ketoacyl synthase (Fragment)
           OS=Dehalococcoides sp. VS GN=DeVSDRAFT_1792 PE=4 SV=1
          Length = 863

 Score = 33.5 bits (75), Expect = 8.5
 Identities = 21/64 (32%), Positives = 28/64 (43%)
 Frame = -2

Query: 431 CNTRNFDPNGQHSLHC*ARAFGRTFKPHKNLEKNAMLASLPITSLMGSADCRKRRARTHS 252
           C   +FDP+G+  LHC AR F      H         A LP+  L+ +A    R      
Sbjct: 662 CAVVSFDPHGERVLHCEARLFHEAGPAHSRPRP----APLPVDELVAAA----RAVDGAQ 713

Query: 251 CYKR 240
           CY+R
Sbjct: 714 CYER 717


>tr|B0FZ73|B0FZ73_MACMU Trace amine associated receptor 6 OS=Macaca
           mulatta PE=2 SV=1
          Length = 345

 Score = 33.5 bits (75), Expect = 8.6
 Identities = 23/77 (29%), Positives = 36/77 (46%)
 Frame = +1

Query: 211 GALISLVHMLLL*QEWVLALRFRQSAEPIKEVIGRLASMAFFSRFL*GLKVLPKARA*QC 390
           GA++++   LL+    +  L F+Q   P   +I  LA     + FL G+ V+P +     
Sbjct: 42  GAVLAVFGNLLV---MISILHFKQLHSPTNFLIASLAC----ADFLVGVTVMPFSMVRTM 94

Query: 391 KECCPFGSKLRVLHTCC 441
           + C  FG      HTCC
Sbjct: 95  ESCWYFGRNFCTFHTCC 111