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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957156
Clone id TST39A01NGRL0027_K01
Library
Length 660
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_K01. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCACATAGTGGCATTTTGATAAGGTTAGAATAATAAACTTTAACCTTATCGTTTGCCAT
TAGCCACTACACACGAAAATTAGTGTGACCACAATGCTACCGTTTATACAGTGGTGGTGA
GAAGACTTGGCTCTGTTTTGTTATAGACTCGCACGTAGTTCGATCACCGGCCAGCGCTCT
GCTTAACTAGTATGGCTATCTTATCCTCGTAAGGTGGCTATGGCGAGAGAAGCTTTGCGT
CGACATGAGATCTTCGAAATGCAGGGTTTCATGCCACTTACAATGTCTTCCTCAGCTCTA
AGCTCATCATCATCGTCATGTTTTTCTCCATCGTCATTCAGGAGAGACTATACAGAGAAG
TGGGAACCCAACGAAGAACGTAACAAAGCAGTTGACAATGTGCGTCACGTGTTGTGTAGG
GCAGGTACATCATCTTCAGTCAGCTCTGCAGCTCCTTTTGGTTTCAAGCTCAGCACGAGC
TCCGAAATTCATAAGCTTCAAGAAAAACAGCAGCCCAGTTGGAGCTGCGAAAACATTGGA
CAGGCGGCTCCTGGGCGATTTGGTTCGTGCAGAGTAGAAGCATCACCTTCATCACCATCA
TCATCAGCTGAATCTTTTTCTTCACTAGTATCCTTGTCATCAGATGCACCTCAATCTGAT
■■Homology search results ■■ -
sp_hit_id Q8NM23
Definition sp|Q8NM23|PURT_CORGL Phosphoribosylglycinamide formyltransferase 2 OS=Corynebacterium glutamicum
Align length 47
Score (bit) 31.6
E-value 3.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957156|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_K01, 5'
         (660 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8NM23|PURT_CORGL Phosphoribosylglycinamide formyltransferase...    32   3.9  
sp|A4QHG1|PURT_CORGB Phosphoribosylglycinamide formyltransferase...    32   3.9  
sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein...    31   6.7  
sp|Q8FMB3|PURT_COREF Phosphoribosylglycinamide formyltransferase...    30   8.7  

>sp|Q8NM23|PURT_CORGL Phosphoribosylglycinamide formyltransferase 2
           OS=Corynebacterium glutamicum GN=purT PE=3 SV=2
          Length = 408

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 346 DYTEKWEPNEERNKAVDNVRHVLCRAGTSSSVSSAAPFGFKLSTSSE 486
           DY E W+P E   +A++N R V  R   ++++     FG +L  S +
Sbjct: 239 DYVESWQPMEMTPRALENARSVAAR--ITNALGGRGVFGVELFVSGD 283


>sp|A4QHG1|PURT_CORGB Phosphoribosylglycinamide formyltransferase 2
           OS=Corynebacterium glutamicum (strain R) GN=purT PE=3
           SV=1
          Length = 408

 Score = 31.6 bits (70), Expect = 3.9
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 346 DYTEKWEPNEERNKAVDNVRHVLCRAGTSSSVSSAAPFGFKLSTSSE 486
           DY E W+P E   +A++N R V  R   ++++     FG +L  S +
Sbjct: 239 DYVESWQPMEMTPRALENARSVAAR--ITNALGGRGVFGVELFVSGD 283


>sp|Q555U5|Y4821_DICDI Probable inactive serine/threonine-protein
           kinase DDB_G0274821 OS=Dictyostelium discoideum
           GN=DDB_G0274821 PE=3 SV=1
          Length = 854

 Score = 30.8 bits (68), Expect = 6.7
 Identities = 19/61 (31%), Positives = 34/61 (55%)
 Frame = +1

Query: 337 FRRDYTEKWEPNEERNKAVDNVRHVLCRAGTSSSVSSAAPFGFKLSTSSEIHKLQEKQQP 516
           F+   T+  + NE  NK+ +    +L ++ +SSS SS++      S+SS     Q++QQP
Sbjct: 266 FKNQQTQ--QVNEIINKSSNTTLQLLNKSSSSSSSSSSSSSSSSSSSSSSSLSFQQQQQP 323

Query: 517 S 519
           +
Sbjct: 324 N 324


>sp|Q8FMB3|PURT_COREF Phosphoribosylglycinamide formyltransferase 2
           OS=Corynebacterium efficiens GN=purT PE=3 SV=2
          Length = 402

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 346 DYTEKWEPNEERNKAVDNVRHVLCRAGTSSSVSSAAPFGFKLSTSSE 486
           DY E W+P E    A++N R V  R   ++++     FG +L  S +
Sbjct: 239 DYVESWQPMEMTAPALENARSVAAR--ITNALGGRGVFGVELFVSGD 283
tr_hit_id B2B026
Definition tr|B2B026|B2B026_PODAN Predicted CDS Pa_3_6090 OS=Podospora anserina
Align length 48
Score (bit) 35.0
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957156|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_K01, 5'
         (660 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2B026|B2B026_PODAN Predicted CDS Pa_3_6090 OS=Podospora anse...    35   4.1  
tr|A3B1J8|A3B1J8_ORYSJ Putative uncharacterized protein OS=Oryza...    34   9.1  

>tr|B2B026|B2B026_PODAN Predicted CDS Pa_3_6090 OS=Podospora
           anserina PE=4 SV=1
          Length = 906

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 18/48 (37%), Positives = 27/48 (56%)
 Frame = +1

Query: 337 FRRDYTEKWEPNEERNKAVDNVRHVLCRAGTSSSVSSAAPFGFKLSTS 480
           FRRDY + W+PNE RN A   +  +L   G +S +++  P  F+   S
Sbjct: 307 FRRDYAKFWDPNETRNAAFTAL--ILSIMGIASCLAAKLPHKFEKMVS 352


>tr|A3B1J8|A3B1J8_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_016920 PE=4 SV=1
          Length = 1088

 Score = 33.9 bits (76), Expect = 9.1
 Identities = 26/87 (29%), Positives = 36/87 (41%), Gaps = 13/87 (14%)
 Frame = +2

Query: 203  ILVRWLWREKLCV-------DMRSSKCRVSCH------LQCLPQL*AXXXXXXXXXXXSG 343
            I+V W+W EK  +       DM +S+C VSC       LQ LP+              SG
Sbjct: 989  IVVTWIWSEKKELRDKWSVPDMAASECEVSCFSEDFAVLQALPR--EAEPLHIIGCLSSG 1046

Query: 344  ETIQRSGNPTKNVTKQLTMCVTCCVGQ 424
                ++G  T     QL +   CC G+
Sbjct: 1047 SVCFKAGFQTVQNIAQLVIFSVCCQGR 1073