DK957159 |
Clone id |
TST39A01NGRL0027_K04 |
Library |
TST39 |
Length |
625 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_K04. 5' end sequence. |
Accession |
DK957159 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL593Contig1 |
Sequence |
CACCTCCTTCGTCTGCTAAGTCAGGAGCTTCTTCGGCTTTGGGTGCTCTTCCTCTCTCTC GCGCTACCTTCTGTGCATGAGCGCGAGAGAGACTTCTGTGTAGTCCATGATGAGGAAGGC AGGTAGCCATCTCAGCAAGCTCGCCATTCGTAGCATTGCTTCCCAGCAGGTTACCCTCAA CCCTTCTGTGTTTTCCAGCGCCTCCCGCCGAGGCTACGCTGACGACGCGTCGCTGAAGAA GACGCCCCTCTTTGATTATCATGTCGAAAATGGGGGTAAGATGGTACCTTTTGCCGGCTG GAGCATGCCTCTCCAATACAAGGACTCCATCATGGACTCTACAACAAACTGCAGAGAGAA TGGCAGCCTTTTTGATGTGTCGCATATGTGCGGTCTAAGCCTCAAAGGAAAGGATAGCAT TGCTTTTCTTGAGAAGCTTGTTGTTGGCGATATCACTGCTCTAGCTCCAGGCACAGGCAC TCTCTCTGTCTTCACAAATGAAAAGGGGGGCATTATCGACGACACTGTCATAACAAAAGT GAAGGATGATCACATTTACCTTGTGGTGAATGCTGGTTGTAGAGACAAAGATCTTGAACA CATGGAGTCGCATCTGAAGCCCTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P93256 |
Definition |
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum |
Align length |
141 |
Score (bit) |
243.0 |
E-value |
6.0e-64 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957159|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_K04, 5' (625 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Me... 243 6e-64 sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Fl... 242 1e-63 sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Fl... 241 2e-63 sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=So... 240 5e-63 sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Fl... 239 1e-62 sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Ar... 235 1e-61 sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisu... 235 2e-61 sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mu... 155 1e-37 sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Ho... 151 2e-36 sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bo... 150 4e-36 sp|Q9TSZ7|GCST_CANFA Aminomethyltransferase, mitochondrial OS=Ca... 147 3e-35 sp|Q54DD3|GCST_DICDI Aminomethyltransferase, mitochondrial OS=Di... 147 4e-35 sp|P28337|GCST_CHICK Aminomethyltransferase, mitochondrial OS=Ga... 141 2e-33 sp|O14110|GCST_SCHPO Probable aminomethyltransferase, mitochondr... 125 1e-28 sp|P48015|GCST_YEAST Aminomethyltransferase, mitochondrial OS=Sa... 124 3e-28 sp|Q9WY54|GCST_THEMA Aminomethyltransferase OS=Thermotoga mariti... 118 3e-26 sp|A5IKL0|GCST_THEP1 Aminomethyltransferase OS=Thermotoga petrop... 115 2e-25 sp|Q65HF9|GCST_BACLD Aminomethyltransferase OS=Bacillus lichenif... 104 3e-22 sp|Q666R5|GCST_YERPS Aminomethyltransferase OS=Yersinia pseudotu... 104 4e-22 sp|A4TIA5|GCST_YERPP Aminomethyltransferase OS=Yersinia pestis (... 104 4e-22 sp|Q1CEZ7|GCST_YERPN Aminomethyltransferase OS=Yersinia pestis b... 104 4e-22 sp|Q8ZHI6|GCST_YERPE Aminomethyltransferase OS=Yersinia pestis G... 104 4e-22 sp|Q1CB44|GCST_YERPA Aminomethyltransferase OS=Yersinia pestis b... 104 4e-22 sp|A7FF19|GCST_YERP3 Aminomethyltransferase OS=Yersinia pseudotu... 104 4e-22 sp|P54378|GCST_BACSU Aminomethyltransferase OS=Bacillus subtilis... 104 4e-22 sp|Q8CSF4|GCST_STAES Aminomethyltransferase OS=Staphylococcus ep... 103 6e-22 sp|Q5HP12|GCST_STAEQ Aminomethyltransferase OS=Staphylococcus ep... 103 6e-22 sp|Q24TH3|GCST_DESHY Aminomethyltransferase OS=Desulfitobacteriu... 103 6e-22 sp|A6TMY6|GCST_ALKMQ Aminomethyltransferase OS=Alkaliphilus meta... 103 6e-22 sp|Q7W1C6|GCST_BORPA Aminomethyltransferase OS=Bordetella parape... 103 7e-22
>sp|P93256|GCST_MESCR Aminomethyltransferase, mitochondrial OS=Mesembryanthemum crystallinum GN=GDCST PE=2 SV=1 Length = 408
Score = 243 bits (620), Expect = 6e-64 Identities = 115/141 (81%), Positives = 125/141 (88%) Frame = +2
Query: 203 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 382 +RR +A +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 ARRCFASEADLKKTALYDFHVANGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVA 85
Query: 383 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 562 HMCGLSLKGKD I FLEKLVVGDI LAPGTGTLSV TNEKGG IDDTVITKV DDHIYL Sbjct: 86 HMCGLSLKGKDCIPFLEKLVVGDIAGLAPGTGTLSVLTNEKGGAIDDTVITKVTDDHIYL 145
Query: 563 VVNAGCRDKDLEHMESHLKPF 625 VVNAGCR+KDL H+E H+K F Sbjct: 146 VVNAGCREKDLAHIEEHMKAF 166
>sp|O23936|GCST_FLATR Aminomethyltransferase, mitochondrial OS=Flaveria trinervia GN=GDCST PE=3 SV=1 Length = 407
Score = 242 bits (618), Expect = 1e-63 Identities = 113/140 (80%), Positives = 125/140 (89%) Frame = +2
Query: 206 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 385 RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCRENGSLFDVSH Sbjct: 26 RRWYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCRENGSLFDVSH 85
Query: 386 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 565 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 566 VNAGCRDKDLEHMESHLKPF 625 VNAGCRDKDL H+E H+K F Sbjct: 146 VNAGCRDKDLAHIEQHMKAF 165
>sp|O49849|GCST_FLAAN Aminomethyltransferase, mitochondrial OS=Flaveria anomala GN=GDCST PE=3 SV=1 Length = 407
Score = 241 bits (616), Expect = 2e-63 Identities = 113/140 (80%), Positives = 125/140 (89%) Frame = +2
Query: 206 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 385 RR YA +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCYASEADLKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTINCRENGSLFDVSH 85
Query: 386 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 565 MCGLSLKGKD +AFLEKLVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV DDHIYLV Sbjct: 86 MCGLSLKGKDCVAFLEKLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDDHIYLV 145
Query: 566 VNAGCRDKDLEHMESHLKPF 625 VNAGCRDKDL H+E H+K F Sbjct: 146 VNAGCRDKDLAHIEEHMKAF 165
>sp|P54260|GCST_SOLTU Aminomethyltransferase, mitochondrial OS=Solanum tuberosum GN=GDCST PE=2 SV=1 Length = 406
Score = 240 bits (612), Expect = 5e-63 Identities = 111/140 (79%), Positives = 125/140 (89%) Frame = +2
Query: 206 RRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSH 385 RR +A DA LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDVSH Sbjct: 26 RRCFASDADLKKTVLYDFHVVNGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVSH 85
Query: 386 MCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLV 565 MCGLSLKGKD+I FLEKLV+ D+ LAPGTG+L+VFTNEKGG IDD+V+TKV +DHIYLV Sbjct: 86 MCGLSLKGKDTIPFLEKLVIADVAGLAPGTGSLTVFTNEKGGAIDDSVVTKVTNDHIYLV 145
Query: 566 VNAGCRDKDLEHMESHLKPF 625 VNAGCRDKDL H+E H+K F Sbjct: 146 VNAGCRDKDLAHIEEHMKSF 165
>sp|P49363|GCST_FLAPR Aminomethyltransferase, mitochondrial OS=Flaveria pringlei GN=GDCST PE=2 SV=1 Length = 407
Score = 239 bits (609), Expect = 1e-62 Identities = 113/150 (75%), Positives = 127/150 (84%) Frame = +2
Query: 176 LNPSVFSSASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCR 355 L S + +RR YA +A LKKT L+D+HV NGGKMVPFAGWSMP+QYKDSIM+ST NCR Sbjct: 16 LGQSDKKTIARRCYASEADLKKTVLYDFHVANGGKMVPFAGWSMPIQYKDSIMESTINCR 75
Query: 356 ENGSLFDVSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVIT 535 ENGSLFDVSHMCGLSLKGKD + FLEKLVV D+ L PGTG+L+VFTNEKGG IDD+VIT Sbjct: 76 ENGSLFDVSHMCGLSLKGKDCVPFLEKLVVADVAGLRPGTGSLTVFTNEKGGAIDDSVIT 135
Query: 536 KVKDDHIYLVVNAGCRDKDLEHMESHLKPF 625 KV DDHIYLVVNAGCRDKDL H+E H+K F Sbjct: 136 KVTDDHIYLVVNAGCRDKDLAHIEEHMKAF 165
>sp|O65396|GCST_ARATH Aminomethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=GDCST PE=1 SV=1 Length = 408
Score = 235 bits (600), Expect = 1e-61 Identities = 109/141 (77%), Positives = 124/141 (87%) Frame = +2
Query: 203 SRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVS 382 SRR +A +A LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCRENGSLFDV+ Sbjct: 26 SRRYFASEADLKKTALYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTVNCRENGSLFDVA 85
Query: 383 HMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYL 562 HMCGLSLKGKD + FLE LVV D+ LAPGTG+L+VFTNEKGG IDD+VITKV D+HIYL Sbjct: 86 HMCGLSLKGKDCVPFLETLVVADVAGLAPGTGSLTVFTNEKGGAIDDSVITKVTDEHIYL 145
Query: 563 VVNAGCRDKDLEHMESHLKPF 625 VVNAGCRDKDL H+E H+K F Sbjct: 146 VVNAGCRDKDLAHIEEHMKAF 166
>sp|P49364|GCST_PEA Aminomethyltransferase, mitochondrial OS=Pisum sativum GN=GDCST PE=1 SV=2 Length = 408
Score = 235 bits (599), Expect = 2e-61 Identities = 108/143 (75%), Positives = 127/143 (88%) Frame = +2
Query: 197 SASRRGYADDASLKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFD 376 + +RR +A ++ LKKT L+D+HV +GGKMVPFAGWSMP+QYKDSIMDST NCR+NGSLFD Sbjct: 24 AVARRCFATESELKKTVLYDFHVAHGGKMVPFAGWSMPIQYKDSIMDSTLNCRQNGSLFD 83
Query: 377 VSHMCGLSLKGKDSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHI 556 VSHMCGLSLKGKD ++FLEKLV+ D+ ALA GTGTL+VFTNEKGG IDD+VITKV DDH+ Sbjct: 84 VSHMCGLSLKGKDVVSFLEKLVIADVAALAHGTGTLTVFTNEKGGAIDDSVITKVTDDHL 143
Query: 557 YLVVNAGCRDKDLEHMESHLKPF 625 YLVVNAGCRDKDL H+E H+K F Sbjct: 144 YLVVNAGCRDKDLAHIEEHMKAF 166
>sp|Q8CFA2|GCST_MOUSE Aminomethyltransferase, mitochondrial OS=Mus musculus GN=Amt PE=2 SV=1 Length = 403
Score = 155 bits (393), Expect = 1e-37 Identities = 71/131 (54%), Positives = 96/131 (73%) Frame = +2
Query: 233 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 412 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS +DS + R + SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKIFGC 92
Query: 413 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 592 D + LE +VVGDI L P GTLS+FTNE GGI+DD +++ + H+Y+V NAGCRDKD Sbjct: 93 DRVKLLESVVVGDIAELRPNQGTLSLFTNEAGGILDDLIVSNTSEGHLYVVSNAGCRDKD 152
Query: 593 LEHMESHLKPF 625 L M+ +K F Sbjct: 153 LALMQDKVKEF 163
>sp|P48728|GCST_HUMAN Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1 Length = 403
Score = 151 bits (382), Expect = 2e-36 Identities = 68/129 (52%), Positives = 94/129 (72%) Frame = +2
Query: 233 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 412 L++TPL+D+H+ +GGKMV FAGWS+P+QY+DS DS + R++ SLFDVSHM + G Sbjct: 33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGS 92
Query: 413 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 592 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGC +KD Sbjct: 93 DRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKD 152
Query: 593 LEHMESHLK 619 L M+ ++ Sbjct: 153 LALMQDKVR 161
>sp|P25285|GCST_BOVIN Aminomethyltransferase, mitochondrial OS=Bos taurus GN=AMT PE=1 SV=1 Length = 397
Score = 150 bits (380), Expect = 4e-36 Identities = 68/129 (52%), Positives = 95/129 (73%) Frame = +2
Query: 233 LKKTPLFDYHVENGGKMVPFAGWSMPLQYKDSIMDSTTNCRENGSLFDVSHMCGLSLKGK 412 L +TPL+D+H+ +GGKMV FAGWS+P+QY+DS ++S + R++ SLFDVSHM + G Sbjct: 27 LHRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVNSHLHTRQHCSLFDVSHMLQTKIFGC 86
Query: 413 DSIAFLEKLVVGDITALAPGTGTLSVFTNEKGGIIDDTVITKVKDDHIYLVVNAGCRDKD 592 D + +E LVVGDI L P GTLS+FTNE GGI+DD ++T + H+Y+V NAGCR+KD Sbjct: 87 DRVKLMESLVVGDIAELKPNQGTLSLFTNEAGGILDDLIVTSASEGHLYVVSNAGCREKD 146
Query: 593 LEHMESHLK 619 L M+ ++ Sbjct: 147 LTLMQDKVR 155
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SLK1 |
Definition |
tr|A9SLK1|A9SLK1_PHYPA Aminomethyltransferase OS=Physcomitrella patens subsp. patens |
Align length |
173 |
Score (bit) |
247.0 |
E-value |
5.0e-64 |
Report |
|