| DK957170 |
| Clone id |
TST39A01NGRL0027_K15 |
| Library |
TST39 |
| Length |
643 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_K15. 5' end sequence. |
| Accession |
DK957170 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL106Contig2 |
| Sequence |
GACAGAATGAGCCCGACCGCCATCGCTAGCTCTGAGATCTCCAACACCATGGATGCCCTC
TGCAGCGTCAACTTCTCTTTGCGTCAGTTTTCCATTCGGCGATGGTCGTCGTCTCCCCTG
CTCATTAACCGCCTGGCTATGCCGAGCTTTTCTCTGTGTGGTCCGTCCTCTTCATCTCCT
GCGAAACCCCTGATCATCGTTAGCTCTTACAGTCCAAGGCGGCCCTCTGATAGAAGCTAC
AGAAGGGACCAGCCGAACGTATACGAGCTCGACCTAGAGGAGCAGGTGTCACAGATTGAC
ATGGATCCCAACAAGATGCTTCAACCAGGAGACCCTAACTCTATGCAGGCCATCATCAAG
GATGTCATGCCTGTTGGCTACTTTGTTTCTCTTCCCACAGGCAGAGATGGCTACCTTCCT
GCAGATGATTTGGGTTTCACAGGTGGGCTTGCAATCTTGCGCAAGCTCTTCAAAGAAGGG
CAGGAGATCACTGTGCGAATTGTATGCAGAGGCGGGGCAGGAAGGGAGATTATTTCTGTG
AAAAAGCCAGAGTTTGCACCTCCAAGTGAGCAGAAGACCATTGAAAGCTTAAGGCTTCAT
TTTGAGAATGAGAAGAAGAACAGGATGAATCCCCGAAATCGGC |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
A6L0A5 |
| Definition |
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) |
| Align length |
50 |
| Score (bit) |
33.1 |
| E-value |
1.3 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957170|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_K15, 5'
(643 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS... 33 1.3
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS... 33 1.7
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS... 33 1.7
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS... 32 2.2
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS... 32 2.2
sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03... 32 2.8
sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase OS... 32 2.8
sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase... 32 2.8
sp|Q8CPH2|TRMFO_STAES Methylenetetrahydrofolate--tRNA-(uracil-5-... 32 3.7
sp|Q5HPU1|TRMFO_STAEQ Methylenetetrahydrofolate--tRNA-(uracil-5-... 32 3.7
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS... 32 3.7
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS... 32 3.7
sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria mening... 31 4.8
sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae GN=... 31 6.3
sp|Q31GJ9|PNP_THICR Polyribonucleotide nucleotidyltransferase OS... 30 8.2
>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
NCTC 11154) GN=pnp PE=3 SV=1
Length = 711
Score = 33.1 bits (74), Expect = 1.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
++ VMP G FV G+DG L ++ + I KEG EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685
>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
OS=Bacteroides fragilis GN=pnp PE=3 SV=1
Length = 708
Score = 32.7 bits (73), Expect = 1.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
++ +MP G FV G+DG L ++ + + KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685
>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
GN=pnp PE=3 SV=1
Length = 708
Score = 32.7 bits (73), Expect = 1.7
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
++ +MP G FV G+DG L ++ + + KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685
>sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase
OS=Roseiflexus sp. (strain RS-1) GN=pnp PE=3 SV=1
Length = 747
Score = 32.3 bits (72), Expect = 2.2
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Frame = +1
Query: 364 VMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV-CRGGAGREIIS 537
+MP G FV+L G+DG + +L G + + + K G EI V ++ G G+ +S
Sbjct: 639 IMPFGAFVNLAPGKDGMVHVSELD-VGRVENVEDVIKMGDEINVMVIGIEPGTGKVSLS 696
>sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase
OS=Bacteroides thetaiotaomicron GN=pnp PE=3 SV=1
Length = 708
Score = 32.3 bits (72), Expect = 2.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIV 504
++ +MP G F+ G+DG L ++ + + KEG EI V+++
Sbjct: 636 VRSIMPYGAFIEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685
>sp|Q9P5N2|YH83_SCHPO Uncharacterized amino-acid permease C359.03c
OS=Schizosaccharomyces pombe GN=SPBC359.03c PE=2 SV=1
Length = 579
Score = 32.0 bits (71), Expect = 2.8
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = +1
Query: 328 GDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVC 507
G+ + A+IK V VG+ + G +P D G+ GG I +K F+ G + +
Sbjct: 212 GEVEFVLALIKVVATVGFIILAIIINCGGVPTDHRGYIGGSIIKQKPFRHGFKGFCSVYT 271
Query: 508 RGG---AGREIISVKKPEFAPP 564
+G EI+ + E P
Sbjct: 272 TAAFSFSGTEIVGLAAAEVGDP 293
>sp|Q0S208|PNP_RHOSR Polyribonucleotide nucleotidyltransferase
OS=Rhodococcus sp. (strain RHA1) GN=pnp PE=3 SV=1
Length = 757
Score = 32.0 bits (71), Expect = 2.8
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 376 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGR-EIISVKKPE 552
G FVSL GRDG + LG +A + + G ++ V I G+ +I V++
Sbjct: 683 GAFVSLLPGRDGLVHISKLGSGKRIAKVEDVVSVGSKLRVEIADIDNRGKISLIPVEEDG 742
Query: 553 FAPPSEQ 573
A P+EQ
Sbjct: 743 AAAPAEQ 749
>sp|O65405|CRK28_ARATH Cysteine-rich receptor-like protein kinase 28
OS=Arabidopsis thaliana GN=CRK28 PE=2 SV=2
Length = 683
Score = 32.0 bits (71), Expect = 2.8
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 382 FVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITV-RIVCRGGAG 522
F +L D + P ++LG G ++ + +F GQEI V R+ C G G
Sbjct: 351 FETLKAATDNFSPENELGRGGFGSVYKGVFSGGQEIAVKRLSCTSGQG 398
>sp|Q8CPH2|TRMFO_STAES
Methylenetetrahydrofolate--tRNA-(uracil-5-)-
methyltransferase trmFO OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=trmFO PE=3 SV=1
Length = 435
Score = 31.6 bits (70), Expect = 3.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Frame = +1
Query: 379 YFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIISVK-KPEF 555
YF TG +GY+ + G G+ + K+ +G+ I R G I K + F
Sbjct: 334 YFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPRETMIGSMAYYISHAKNEKNF 393
Query: 556 AP--------PSEQKTIESLRLHFENEKKNRM 627
P PS +K I+ + +E + K +
Sbjct: 394 QPMNANFGLLPSLEKRIKDKKERYETQAKRAL 425
>sp|Q5HPU1|TRMFO_STAEQ
Methylenetetrahydrofolate--tRNA-(uracil-5-)-
methyltransferase trmFO OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=trmFO PE=3 SV=1
Length = 435
Score = 31.6 bits (70), Expect = 3.7
Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 9/92 (9%)
Frame = +1
Query: 379 YFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIISVK-KPEF 555
YF TG +GY+ + G G+ + K+ +G+ I R G I K + F
Sbjct: 334 YFAGQMTGVEGYVESAASGLVAGINLAHKILDKGEVIFPRETMIGSMAYYISHAKNEKNF 393
Query: 556 AP--------PSEQKTIESLRLHFENEKKNRM 627
P PS +K I+ + +E + K +
Sbjct: 394 QPMNANFGLLPSLEKRIKDKKERYETQAKRAL 425
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A6E805 |
| Definition |
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase OS=Pedobacter sp. BAL39 |
| Align length |
79 |
| Score (bit) |
40.4 |
| E-value |
0.094 |
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957170|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_K15, 5'
(643 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas... 40 0.094
tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom... 40 0.094
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th... 40 0.16
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte... 39 0.27
tr|A9SJH6|A9SJH6_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.61
tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochl... 37 1.4
tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter... 36 1.8
tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct... 35 3.0
tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto... 35 3.0
tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen... 35 3.9
tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba... 35 3.9
tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct... 35 3.9
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo... 35 5.1
tr|Q08WR4|Q08WR4_STIAU RNA binding S1 OS=Stigmatella aurantiaca ... 35 5.1
tr|A4R541|A4R541_MAGGR Putative uncharacterized protein OS=Magna... 34 6.6
tr|Q3AFC3|Q3AFC3_CARHZ Ribonuclease R OS=Carboxydothermus hydrog... 34 6.7
tr|Q1D6H1|Q1D6H1_MYXXD Ribosomal protein S1 family protein OS=My... 34 6.7
tr|B3DUV3|B3DUV3_METI4 Ribosomal protein S1 OS=Methylacidiphilum... 34 6.7
tr|A7HME7|A7HME7_FERNB Hydroxymethylbutenyl pyrophosphate reduct... 34 6.7
tr|A1AM10|A1AM10_PELPD SSU ribosomal protein S1P OS=Pelobacter p... 34 6.7
tr|Q8KFN4|Q8KFN4_CHLTE Ribosomal protein S1 OS=Chlorobium tepidu... 34 8.8
tr|Q0AA52|Q0AA52_ALHEH SSU ribosomal protein S1P OS=Alkalilimnic... 34 8.8
tr|B3QQD6|B3QQD6_CHLP8 RNA binding S1 domain protein OS=Chloroba... 34 8.8
tr|B2RZJ3|B2RZJ3_BORHD SSU ribosomal protein S1P OS=Borrelia her... 34 8.8
tr|A0PYT7|A0PYT7_CLONN Leucine Rich Repeat domain protein OS=Clo... 34 8.8
tr|Q7X1F1|Q7X1F1_9BACT Lfe154p1 (Fragment) OS=Leptospirillum fer... 34 8.8
tr|Q1K2U0|Q1K2U0_DESAC TraB family protein OS=Desulfuromonas ace... 34 8.8
tr|B2QDR6|B2QDR6_9BACL RNA binding S1 domain protein OS=Exiguoba... 34 8.8
tr|O24288|O24288_PEA Polynucleotide phosphorylase OS=Pisum sativ... 34 8.8
>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
Length = 715
Score = 40.4 bits (93), Expect = 0.094
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 534
+K +MP G FV + G+DG L ++ +T L + +FKEG ++ V+++ G+ +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694
Query: 535 SVK-------KPEFAPPSE 570
S K KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713
>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
PE=4 SV=1
Length = 553
Score = 40.4 bits (93), Expect = 0.094
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
Frame = +1
Query: 343 MQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTG-GLAILRKLFKEGQEITVRIVCRGGA 519
++ +K++ G F+SLP G +G+LP + G G + + GQE++VR++ R
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324
Query: 520 GREIISVKKPEFAPPSEQKTIESL 591
G+ +++KK E A + K E +
Sbjct: 325 GQVTLTMKKEEDAEKLDLKLGEGV 348
>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
SV=1
Length = 616
Score = 39.7 bits (91), Expect = 0.16
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +1
Query: 355 IKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREII 534
I ++ G V LP+G DG++PA L GG+ + FK G E+ ++++ + II
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHL-LQGGVRDINASFKVGDELPLKVIEFDRENKRII 544
Query: 535 SVKKPEFAPPSEQKTIESLRLH 600
F S+++ E ++ H
Sbjct: 545 LSALEYFKGKSKEEIEEYMKQH 566
>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
PE=4 SV=1
Length = 150
Score = 38.9 bits (89), Expect = 0.27
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = +1
Query: 376 GYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREIISVKKPEF 555
G FVSLP G+ G + ++ ++ + ++ KEGQE+ V+++ GR +S+KK
Sbjct: 20 GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78
Query: 556 APP 564
PP
Sbjct: 79 PPP 81
>tr|A9SJH6|A9SJH6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_165287 PE=4 SV=1
Length = 833
Score = 37.7 bits (86), Expect = 0.61
Identities = 24/64 (37%), Positives = 33/64 (51%)
Frame = +2
Query: 11 ARPPSLALRSPTPWMPSAASTSLCVSFPFGDGRRLPCSLTAWLCRAFLCVVRPLHLLRNP 190
++PP LRSPTP +AA ++ SF R + A C AF+C P LL+ P
Sbjct: 41 SQPPVKFLRSPTPTASTAAGSTSSTSFSTTTELR---AYMAHHCHAFVCPELPFRLLQTP 97
Query: 191 *SSL 202
+SL
Sbjct: 98 LASL 101
>tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P
OS=Prosthecochloris vibrioformis (strain DSM 265)
GN=Cvib_1514 PE=4 SV=1
Length = 602
Score = 36.6 bits (83), Expect = 1.4
Identities = 27/90 (30%), Positives = 42/90 (46%)
Frame = +1
Query: 349 AIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGRE 528
A I ++ G V LP DG++PA L GG+ + FK G + +R++ +
Sbjct: 492 AEISQIIEKGVIVILPGDVDGFVPATHL-LQGGVKDIHSSFKIGDALPLRVIEFDKENKR 550
Query: 529 IISVKKPEFAPPSEQKTIESLRLHFENEKK 618
II + E+ ++ IES NEKK
Sbjct: 551 II-LSALEYFKDKSKEEIESYLQAHPNEKK 579
>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter
hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
CH001A) GN=CHAB381_0481 PE=4 SV=1
Length = 557
Score = 36.2 bits (82), Expect = 1.8
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Frame = +1
Query: 319 LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVR 498
L+ GD ++Q + ++ P G FV L +G+L ++ + + + EGQEI V
Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341
Query: 499 IVCRGGAGREI-ISVK 543
+V G R + +S+K
Sbjct: 342 VVEINGDDRRLRVSLK 357
>tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reductase
OS=Caldicellulosiruptor saccharolyticus (strain ATCC
43494 / DSM 8903) GN=Csac_1891 PE=4 SV=1
Length = 662
Score = 35.4 bits (80), Expect = 3.0
Identities = 18/68 (26%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Frame = +1
Query: 352 IIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRIVCRGGAGREI 531
+I ++ G V+ G G++PA ++ ++ + ++KLFK G+++ VR++ ++I
Sbjct: 481 VIAEIRQKGIVVNFE-GLRGFVPASEISYSKRIEDVKKLFKVGEQVKVRVIDIDKQKKQI 539
Query: 532 -ISVKKPE 552
+S+KK +
Sbjct: 540 YLSIKKTQ 547
>tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein
OS=Thermotogales bacterium TBF 19.5.1 GN=KoleDRAFT_0875
PE=4 SV=1
Length = 572
Score = 35.4 bits (80), Expect = 3.0
Identities = 17/74 (22%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +1
Query: 286 VSQIDMDPNKMLQPGDP--NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAIL 459
+ Q+ DP ++ P + ++ ++K ++P G+FV + G +G + ++ + L
Sbjct: 263 LKQLQEDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDL 322
Query: 460 RKLFKEGQEITVRI 501
++L +EG + V+I
Sbjct: 323 KELIREGDRVKVKI 336
>tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein
OS=Hydrogenobaculum sp. (strain Y04AAS1)
GN=HY04AAS1_0061 PE=4 SV=1
Length = 525
Score = 35.0 bits (79), Expect = 3.9
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +1
Query: 322 QPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLGFTGGLAILRKLFKEGQEITVRI 501
+PG ++ +K+V P G F+ LP G DG LP ++ L + GQ ITV++
Sbjct: 423 KPGQ--QVELAVKEVRPFGTFLGLPEGIDGLLPISEIPKNTNL-------EPGQNITVKV 473
Query: 502 V 504
+
Sbjct: 474 L 474
|