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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957196
Clone id TST39A01NGRL0027_L17
Library
Length 599
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_L17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCTCTCTCTCTCTCTCTCTCTCTCTTCTGTCCACAATTCATCCATGAATTCTGCCAACC
CTCCCCCAAGTTCTGGCTATAGCGAGCTCCTGGAGCGCGTCTCCTCCCTGGAGCAGTCTG
TCCAGAAGCTTCTTTCAGAAAAGAAACGCTCAAATTCTCAGCAGCATCTGCTTCATTTGG
AACAGCAACACGAGACTTGCTCATCTCCCAGGTTGCGAGTGCCTTACCCTTCCACATTTG
GAGTGACCAGCGCTTCCGTGCCTTCCGTTTTCCAGATGCCCCTGCACTATCCTCGATTCT
CACGTGCGGACTATGAGGCCATGGAGGAGTGGAGGCTGGCTCGCTTGCTGGAAGAGTATG
GTCTGCCTATCCCTTCCACTCTCGCTGACATGCGCGAGCTTGCCATTGGGAACTTTCTAT
GGGAAACATAGAAAGGCTGACAAACTATTTACTCTTAGCCTTCTCCATCAGTAAAGGGAA
CTTGTTACCTACAGATGTGGATGTGCAAGGAATTATAGGAAAGTGTCGTTTCTTCCCAAC
AAGGCTAGTTTATGTTCCAATAGCAGTAATTGCAGCAAGATTATGGAATGGAAATGCTG
■■Homology search results ■■ -
sp_hit_id Q3UR32
Definition sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus
Align length 36
Score (bit) 32.3
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957196|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_L17, 5'
         (599 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus GN=P2rx...    32   1.9  
sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella...    31   4.2  
sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella...    31   4.2  
sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichi...    31   4.2  
sp|P49654|P2RX3_RAT P2X purinoceptor 3 OS=Rattus norvegicus GN=P...    31   4.2  
sp|Q62985|SH2B1_RAT SH2B adapter protein 1 OS=Rattus norvegicus ...    30   7.1  
sp|Q91ZM2|SH2B1_MOUSE SH2B adapter protein 1 OS=Mus musculus GN=...    30   7.1  
sp|Q9R1S7|MRP6_MOUSE Multidrug resistance-associated protein 6 O...    30   7.1  
sp|Q14BI2|GRM2_MOUSE Metabotropic glutamate receptor 2 OS=Mus mu...    30   7.1  
sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos ta...    30   9.3  
sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing prote...    30   9.3  

>sp|Q3UR32|P2RX3_MOUSE P2X purinoceptor 3 OS=Mus musculus GN=P2rx3
           PE=2 SV=1
          Length = 397

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 17/36 (47%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 461 FSISKGNLLP--TDVDVQGIIGKCRFFPTRLVYVPI 562
           F+  KGNLLP  TD D++    KCRF P +  + PI
Sbjct: 184 FNFEKGNLLPNLTDKDIK----KCRFHPEKAPFCPI 215


>sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella
           typhimurium GN=parE PE=3 SV=1
          Length = 630

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 291 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 172
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella
           typhi GN=parE PE=3 SV=1
          Length = 630

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 291 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 172
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichia
           coli (strain K12) GN=parE PE=1 SV=3
          Length = 630

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -3

Query: 291 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 172
           DSAG S K+ + R+  ++   KGK L TWE+S   V    E
Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460


>sp|P49654|P2RX3_RAT P2X purinoceptor 3 OS=Rattus norvegicus
           GN=P2rx3 PE=2 SV=1
          Length = 397

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = +2

Query: 461 FSISKGNLLP--TDVDVQGIIGKCRFFPTRLVYVPI 562
           F+  KGNLLP  TD D++    +CRF P +  + PI
Sbjct: 184 FNFEKGNLLPNLTDKDIK----RCRFHPEKAPFCPI 215


>sp|Q62985|SH2B1_RAT SH2B adapter protein 1 OS=Rattus norvegicus
           GN=Sh2b1 PE=1 SV=1
          Length = 756

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 477 PLLMEKAKSK*FVSLSMFPIESSQWQARACQREWKG*ADHTLPASEPASTPPWPHSPHVR 298
           P+ +E   S   V +S  P  S + Q R+  R+           ++P+  PPW   PH  
Sbjct: 608 PIPLESGGSSDVVLVSYVP--SQRQQERSTSRD----------PTQPSEPPPWTDPPHPG 655

Query: 297 IEDSAGA 277
            E+++GA
Sbjct: 656 AEEASGA 662


>sp|Q91ZM2|SH2B1_MOUSE SH2B adapter protein 1 OS=Mus musculus
           GN=Sh2b1 PE=1 SV=2
          Length = 756

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -3

Query: 477 PLLMEKAKSK*FVSLSMFPIESSQWQARACQREWKG*ADHTLPASEPASTPPWPHSPHVR 298
           P+ +E   S   V +S  P  S + Q R+  R+           ++P+  PPW   PH  
Sbjct: 608 PIPLESGGSSDVVLVSYVP--SQRQQERSTSRD----------PAQPSEPPPWTDPPHPG 655

Query: 297 IEDSAGA 277
            E+++GA
Sbjct: 656 AEEASGA 662


>sp|Q9R1S7|MRP6_MOUSE Multidrug resistance-associated protein 6
           OS=Mus musculus GN=Abcc6 PE=1 SV=1
          Length = 1498

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 6/55 (10%)
 Frame = -1

Query: 461 RLRVNSLSAFLCFP*KVPNGKLAHVS-ESGRDR-----QTILFQQASQPPLLHGL 315
           R+  + L+AFLC     PNG +A  S  S +DR      T  + Q S PP LHG+
Sbjct: 594 RVSFDRLAAFLCLEEVDPNGMIASNSRRSSKDRISVHNGTFAWSQES-PPCLHGI 647


>sp|Q14BI2|GRM2_MOUSE Metabotropic glutamate receptor 2 OS=Mus
           musculus GN=Grm2 PE=2 SV=2
          Length = 872

 Score = 30.4 bits (67), Expect = 7.1
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%)
 Frame = +1

Query: 247 PALPCLPFSRCPCTILDSHVRTMRPWRSGGWLACWKSMVCLSLPLSL---TCASLPLG 411
           P+   LP SRC    L + V++++P    G + CW  + C      L   TCA   LG
Sbjct: 490 PSAGTLPASRCSEPCLQNEVKSVQP----GEVCCWLCIPCQPYEYRLDEFTCADCGLG 543


>sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos
           taurus GN=ARHGAP10 PE=2 SV=1
          Length = 785

 Score = 30.0 bits (66), Expect = 9.3
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
 Frame = -3

Query: 402 QARACQREWKG*ADHTLPASEPASTPPWPHSPHVRIEDSAGASGK-------RKAR 256
           QAR+   +W      T P+  PA TPP P  P V +   A  + K       RKAR
Sbjct: 678 QARSSAVQWLNPQSPTTPSCSPAVTPPSPKLPPVPLSLPATVADKPPESIISRKAR 733
tr_hit_id B6SYT2
Definition tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 53
Score (bit) 79.7
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957196|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_L17, 5'
         (599 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m...    80   1e-13
tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m...    75   3e-12
tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08...    74   8e-12
tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00...    74   8e-12
tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs...    74   8e-12
tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza...    74   8e-12
tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza...    74   8e-12
tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi...    72   3e-11
tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m...    72   3e-11
tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen...    72   3e-11
tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza...    71   4e-11
tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs...    71   5e-11
tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m...    71   5e-11
tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m...    71   5e-11
tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2...    70   7e-11
tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who...    70   7e-11
tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom...    70   7e-11
tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom...    70   9e-11
tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul...    70   1e-10
tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m...    69   3e-10
tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562...    68   4e-10
tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m...    68   4e-10
tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom...    68   4e-10
tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m...    67   8e-10
tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=...    65   3e-09
tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556...    65   3e-09
tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2...    64   5e-09
tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi...    62   3e-08
tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis...    55   3e-06
tr|A3BC93|A3BC93_ORYSJ Putative uncharacterized protein OS=Oryza...    49   3e-04

>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 87

 Score = 79.7 bits (195), Expect = 1e-13
 Identities = 36/53 (67%), Positives = 39/53 (73%)
 Frame = +3

Query: 264 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           S FQMPLHYPR SR DYEAM EW+L RLL EYGLP+  T+   R  AIG FLW
Sbjct: 28  SYFQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFAIGTFLW 80


>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 99

 Score = 75.1 bits (183), Expect = 3e-12
 Identities = 33/53 (62%), Positives = 39/53 (73%)
 Frame = +3

Query: 264 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           S F+MPLHYPR+ +ADYEAM EWR+  LL EYGLP+   L   RE A+G FLW
Sbjct: 43  SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFAMGAFLW 95


>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38
           (Putative uncharacterized protein) (Putative
           uncharacterized protein P0443E05.1) OS=Oryza sativa
           subsp. japonica GN=P0483F08.38 PE=4 SV=1
          Length = 79

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = +3

Query: 270 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  AIG FLW
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70


>tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein
           OSJNBa0009J19.26 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0009J19.26 PE=4 SV=1
          Length = 82

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 31/51 (60%), Positives = 38/51 (74%)
 Frame = +3

Query: 270 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+G FLW
Sbjct: 28  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLW 78


>tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subsp.
           japonica GN=Os06g0523300 PE=4 SV=1
          Length = 98

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 31/51 (60%), Positives = 38/51 (74%)
 Frame = +3

Query: 270 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+G FLW
Sbjct: 44  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLW 94


>tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_23191 PE=4 SV=1
          Length = 82

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 31/51 (60%), Positives = 38/51 (74%)
 Frame = +3

Query: 270 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           FQMPLHYPR+ +ADYEAM EWR+  LL EYGLP+   + + R  A+G FLW
Sbjct: 28  FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMGAFLW 78


>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_00937 PE=4 SV=1
          Length = 79

 Score = 73.6 bits (179), Expect = 8e-12
 Identities = 32/51 (62%), Positives = 36/51 (70%)
 Frame = +3

Query: 270 FQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLW 422
           FQMPLHYPR+ + DYE M EW+L RLL EYGLP+   L   R  AIG FLW
Sbjct: 20  FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIGAFLW 70


>tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 101

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 30/55 (54%), Positives = 41/55 (74%)
 Frame = +3

Query: 264 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLWET 428
           S FQ+PLHYP+++++DYE M EW+L RLL EYGLP+     + R+ AIG FLW +
Sbjct: 43  SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSS 97


>tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=4 SV=1
          Length = 104

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 34/69 (49%), Positives = 44/69 (63%)
 Frame = +3

Query: 216 RVPYPSTFGVTSASVPSVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMR 395
           +V  P T   +S +    F MPLHYPR+ +ADYE+M EWR+  LL EYGLP+   L   R
Sbjct: 36  KVEGPRTMNCSSYT----FHMPLHYPRYKKADYESMPEWRVDCLLREYGLPVDGELDSKR 91

Query: 396 ELAIGNFLW 422
           + A+G FLW
Sbjct: 92  KFAMGAFLW 100


>tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragment)
           OS=Arabidopsis thaliana PE=4 SV=1
          Length = 102

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 30/55 (54%), Positives = 41/55 (74%)
 Frame = +3

Query: 264 SVFQMPLHYPRFSRADYEAMEEWRLARLLEEYGLPIPSTLADMRELAIGNFLWET 428
           S FQ+PLHYP+++++DYE M EW+L RLL EYGLP+     + R+ AIG FLW +
Sbjct: 43  SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIGAFLWSS 97