NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957198
Clone id TST39A01NGRL0027_L19
Library
Length 572
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_L19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGTGTGTGCGCGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGCTCCCTTACTCAA
GATCCAGCCATGTCTGAAGAGCACCACCATCGCCACCACTTTGGGCATCACAAGCAAGAG
GATGACGCTCCTCCACCCCCGCCTGCCGATTACACCTACTCCGAGGATGCCGTGCCCATC
CAGTACACAGAATATTATGATGGGCCGCGCCGCCCTTCTGGCTACAGCACTACCACCGAA
ACCACCGAGGTGGTTGTGAAAACAGACGAGCATGGAAAGAAACATGAGAAGGAGCACAAG
ACCAAAGAGCACGTTGGAGAAGCTCTTGGCGCAGCAGCTGGCGCTTATGCCTTGTATGAG
CGTCATGAAGCGAAGAAGGACTCAGAGCATGCAGGGCGCCACAAGATGGAAGAGCGGATA
GCAGAGGCTGTTGTTGTGAGTGCCGGTGGGTATGCGCTCCATGAGCACCATGAGAAGAAA
GAGTCAGTGGAGGAGGAAGAGGGTCATAAGAAGAAACACCACTTCTTCTAAGTGCCTTTG
TTTTTGCTTGATGTTTTGTCATGGTGATACAT
■■Homology search results ■■ -
sp_hit_id Q08655
Definition sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum lycopersicum
Align length 32
Score (bit) 48.1
E-value 3.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_L19, 5'
         (572 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solan...    48   3e-05
sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solan...    43   0.001
sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solan...    40   0.011
sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1        34   0.59 
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    31   3.8  
sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori GN...    31   5.0  
sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6 OS=Dro...    31   5.0  
sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subu...    30   6.5  
sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subu...    30   6.5  
sp|Q4P2B6|SEC31_USTMA Protein transport protein SEC31 OS=Ustilag...    30   6.5  
sp|A2A2Z9|AN18B_HUMAN Ankyrin repeat domain-containing protein 1...    30   6.5  
sp|P25236|SEPP1_RAT Selenoprotein P OS=Rattus norvegicus GN=Sepp...    30   8.5  
sp|Q5R8W9|SEPP1_PONAB Selenoprotein P OS=Pongo abelii GN=SEPP1 P...    30   8.5  

>sp|Q08655|ASR1_SOLLC Abscisic stress-ripening protein 1 OS=Solanum
           lycopersicum GN=ASR1 PE=2 SV=1
          Length = 115

 Score = 48.1 bits (113), Expect = 3e-05
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHA +HK+EE IA A  V AGG+A
Sbjct: 54  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFA 85


>sp|P37219|ASR2_SOLLC Abscisic stress-ripening protein 2 OS=Solanum
           lycopersicum GN=ASR2 PE=4 SV=1
          Length = 114

 Score = 43.1 bits (100), Expect = 0.001
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +H+AKKD EHA +HK+EE I     V AGG+A
Sbjct: 56  KHKAKKDPEHAHKHKIEEEIMAVAAVGAGGFA 87


>sp|P37220|ASR3_SOLLC Abscisic stress-ripening protein 3 OS=Solanum
           lycopersicum GN=ASR3 PE=4 SV=2
          Length = 108

 Score = 39.7 bits (91), Expect = 0.011
 Identities = 16/32 (50%), Positives = 24/32 (75%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +H+AKKD E+A +HK+++ IA    V AGG+A
Sbjct: 54  KHKAKKDPENAHKHKIKQEIAAVAAVGAGGFA 85


>sp|O88799|ZAN_MOUSE Zonadhesin OS=Mus musculus GN=Zan PE=2 SV=1
          Length = 5376

 Score = 33.9 bits (76), Expect = 0.59
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
 Frame = -2

Query: 298  CAPSH----VSFHARLFSQPPRWFRW*CCSQKGGAAHHNILCTGWARHPRSRCNRQAGVE 131
            C PS      SF  R F    +WF   C       +H++ILC  W    +  C+ + GV 
Sbjct: 1602 CVPSSQCGCTSFQGRYFKLQEQWFNPDCKEICTCESHNHILCKPWKCKAQEACSYKNGV- 1660

Query: 130  ERHPLACDAQ 101
                L C AQ
Sbjct: 1661 ----LGCHAQ 1666


>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia
           OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1
          Length = 954

 Score = 31.2 bits (69), Expect = 3.8
 Identities = 25/94 (26%), Positives = 33/94 (35%), Gaps = 31/94 (32%)
 Frame = -2

Query: 565 TMTKHQAKTKALRRSGVSSYD---------PLPPPLTLSSHGAHGAHT------------ 449
           T+  HQ+ T   +   +  Y          P P PL+   H  H  +T            
Sbjct: 575 TVYGHQSTTSTAQTMAIDGYGSSMVAQAQPPPPTPLSSCRHYMHAPYTSLTRPLHHQTSS 634

Query: 448 --HRHSQ--------QQPLLSALPSCGALHALSP 377
             H HS         Q P +S LPS  A HA+ P
Sbjct: 635 CPHSHSNVGDYVIAHQVPFISPLPSLAATHAVPP 668


>sp|P52167|GATB_BOMMO Transcription factor BCFI OS=Bombyx mori
           GN=GATA-B PE=2 SV=1
          Length = 508

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 30/90 (33%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
 Frame = +3

Query: 51  PYSRSSHV*RAPPSP---PLWASQARG*RSSTPACRLHLLRGCRAHPVHRIL*WAAPPFW 221
           PYS        PP+P   P  AS   G  SS P  R   LR     P+H       PP+ 
Sbjct: 48  PYSHLDDSLFKPPTPGSAPPTASTCAGVPSSAPRRRPRRLRP--PAPLHYDDYAPPPPYS 105

Query: 222 LQHYHRNHRGGCENRRAWKET*EGAQDQRA 311
             H+H   +GG  N  A + T    Q +RA
Sbjct: 106 HDHHHHLEQGGGGNGAASRCTAVRLQQRRA 135


>sp|Q24206|BRC4_DROME Broad-complex core protein isoform 6
           OS=Drosophila melanogaster GN=br PE=1 SV=2
          Length = 880

 Score = 30.8 bits (68), Expect = 5.0
 Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
 Frame = -2

Query: 532 LRRSGVSSYDPLPPPLTLSSHGAHGAHTHRHSQQQPLLSALPSCGALHA----LSPSSLH 365
           L R G +   P PPP    SH       H H  Q P LS LPS   LHA    LS ++ H
Sbjct: 575 LERPGGTGSPPPPPP----SH-------HSHFGQHP-LSLLPSHHQLHATHHELSAAAAH 622

Query: 364 DAH 356
            AH
Sbjct: 623 HAH 625


>sp|Q5R7P7|TAF9B_PONAB Transcription initiation factor TFIID subunit
           9B OS=Pongo abelii GN=TAF9B PE=2 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 89  IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 202
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209


>sp|Q9HBM6|TAF9B_HUMAN Transcription initiation factor TFIID subunit
           9B OS=Homo sapiens GN=TAF9B PE=1 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +2

Query: 89  IATTLGITSKRMTLLHPRLPITPTPRMPCPSSTQNIMM 202
           +AT + +TS+R T+  P    TP   +P  ++ QN+++
Sbjct: 172 VATPMSVTSQRFTVQIPPSQSTPVKPVPATTAVQNVLI 209


>sp|Q4P2B6|SEC31_USTMA Protein transport protein SEC31 OS=Ustilago
            maydis GN=SEC31 PE=3 SV=1
          Length = 1416

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 13/36 (36%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = -2

Query: 496  PPPLTLSSHGAHGAHTHRHSQQ--QPLLSALPSCGA 395
            P P+  +++GA+GA +++ + Q  QP++ A P+ GA
Sbjct: 1047 PEPVQTNAYGAYGAQSYQSAYQPAQPMIPAAPAFGA 1082
tr_hit_id Q5MDK9
Definition tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein (Fragment) OS=Pseudotsuga menziesii var. menziesii
Align length 32
Score (bit) 52.8
E-value 1.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957198|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_L19, 5'
         (572 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein ...    53   1e-05
tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1          50   7e-05
tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea...    50   9e-05
tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci2...    50   1e-04
tr|Q6IT49|Q6IT49_MUSAC Abscisic stress ripening protein-like pro...    49   2e-04
tr|B8YQ15|B8YQ15_MUSAC Abscisic stress ripening protein OS=Musa ...    49   2e-04
tr|A9NQS8|A9NQS8_PICSI Putative uncharacterized protein OS=Picea...    49   2e-04
tr|A9P0F2|A9P0F2_PICSI Putative uncharacterized protein OS=Picea...    49   3e-04
tr|Q9SEW0|Q9SEW0_LILLO Anth (Pollen-specific desiccation-associa...    48   3e-04
tr|Q2QJV3|Q2QJV3_SOLCE ASR1 OS=Solanum cheesmanii GN=Asr1 PE=4 SV=1    48   3e-04
tr|Q2QJV2|Q2QJV2_SOLLC ASR1 OS=Solanum lycopersicum var. cerasif...    48   3e-04
tr|Q2QJV1|Q2QJV1_SOLHA ASR1 OS=Solanum habrochaites GN=Asr1 PE=4...    48   3e-04
tr|Q2QJV0|Q2QJV0_SOLPE ASR1 OS=Lycopersicon peruvianum var. humi...    48   3e-04
tr|Q2QJU9|Q2QJU9_SOLCI ASR1 OS=Solanum chilense GN=Asr1 PE=4 SV=1      48   3e-04
tr|Q2QJU8|Q2QJU8_9SOLN ASR1 OS=Solanum corneliomuelleri GN=Asr1 ...    48   3e-04
tr|O82575|O82575_SOLLC Fruit-ripening protein OS=Solanum lycoper...    48   3e-04
tr|Q948L3|Q948L3_SACOF Drought inducible 22 kD protein OS=Saccha...    48   4e-04
tr|Q6EBV8|Q6EBV8_9POAL 22 kDa drought-inducible protein OS=Sacch...    48   4e-04
tr|B4FKG5|B4FKG5_MAIZE Abscisic stress ripening protein 2 OS=Zea...    48   4e-04
tr|A8IK82|A8IK82_MAIZE Dip protein OS=Zea mays PE=4 SV=1               48   4e-04
tr|A9P0G6|A9P0G6_PICSI Putative uncharacterized protein OS=Picea...    47   6e-04
tr|A9NPQ5|A9NPQ5_PICSI Putative uncharacterized protein OS=Picea...    47   6e-04
tr|Q93WZ6|Q93WZ6_PRUPE Abscisic stress ripening-like protein OS=...    47   8e-04
tr|Q9FRV9|Q9FRV9_CALSL Putative ripening protein OS=Calystegia s...    47   0.001

>tr|Q5MDK9|Q5MDK9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDK0|Q5MDK0_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDJ5|Q5MDJ5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDJ3|Q5MDJ3_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH9|Q5MDH9_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 119

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 88  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 119


>tr|Q5MDH7|Q5MDH7_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q5MDH5|Q5MDH5_PSEMZ Water deficit inducible LP3-like protein
           (Fragment) OS=Pseudotsuga menziesii var. menziesii PE=4
           SV=1
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 23/32 (71%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHAGRHK+EE IA A  V +GGYA
Sbjct: 93  KHEAKKDPEHAGRHKIEEEIAAAAAVGSGGYA 124


>tr|Q6S9Z8|Q6S9Z8_GINBI ASR protein OS=Ginkgo biloba PE=2 SV=1
          Length = 181

 Score = 50.4 bits (119), Expect = 7e-05
 Identities = 22/32 (68%), Positives = 25/32 (78%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD EHA RHK+EE +A A  V AGGYA
Sbjct: 123 KHEAKKDPEHAHRHKIEEEVAAAAAVGAGGYA 154


>tr|A9NP62|A9NP62_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 157

 Score = 50.1 bits (118), Expect = 9e-05
 Identities = 22/32 (68%), Positives = 26/32 (81%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYA 456
           +HEAKKD E+AGRHK+EE IA A  V +GGYA
Sbjct: 100 KHEAKKDPENAGRHKIEEEIAAAAAVGSGGYA 131


>tr|Q9ZRB6|Q9ZRB6_SOLTU Ci21A protein OS=Solanum tuberosum GN=ci21A
           PE=4 SV=1
          Length = 109

 Score = 49.7 bits (117), Expect = 1e-04
 Identities = 22/33 (66%), Positives = 26/33 (78%)
 Frame = +1

Query: 361 RHEAKKDSEHAGRHKMEERIAEAVVVSAGGYAL 459
           +HEAKKD EHA +HK+EE IA A  V AGG+AL
Sbjct: 53  KHEAKKDPEHAHKHKIEEEIAAAAAVGAGGFAL 85