DK957234
Clone id TST39A01NGRL0027_N07
Library
Length 580
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_N07. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GTGAAGCTTCTAGATCTCATTTGTGCTAACACGAAGCTTCTGCTAAGTAGCAGAAGATAG
TATCTGGAATCCAGAGCAAGACATGGATGCTCTGGCCATGGCAGGCGCCTCTTCGTCTAC
CACGTCCTCATCCCTTATCGCCAGAGCCTTCCACTCACAGCGCCTTTCCAGGCTTCCCTC
GCAGCGCGGCTATGTCTTCCTTCCCTTATCTTCCTGCCGAGCAAGGCCCATCTCAATCTC
TGTCTCAGCATGGCAACATCGTCCCTCCTACACTTTCAGAGCATCAGCTCAGGCGGACGC
CAAGGTTGTAAATGAGCAACAGGATGCCGAAGCTAGCGAGTCAGAGTATGAAAGCACAGA
TGAAGAAAGTGATGGGTCTGCAGCAGAAGAAGCTTCCTTACCTAGTGTGGAGGCAATGCT
GAAGAAATACAGGGAGGCATTGTCGAATAATGATGAAGCAGCTCTGGAAGAGCTTGATGT
CAAGTTTCAGCAGCTGGAGAAGGAAAAGAACATGTACGCAAAGCAGGTCTCTACCCTCAA
CGACGAGGTTCTTTCACTCAAAGAGCGACTTCTGCGGTTG
■■Homology search results ■■ -
sp_hit_id O67124
Definition sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50 ATPase OS=Aquifex aeolicus
Align length 69
Score (bit) 34.7
E-value 0.35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957234|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N07, 5'
(580 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair ra... 35 0.35
sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15 OS=Schizos... 34 0.46
sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing pr... 33 0.79
sp|P41834|UFE1_YEAST Syntaxin UFE1 OS=Saccharomyces cerevisiae G... 33 1.0
sp|O95613|PCNT_HUMAN Pericentrin OS=Homo sapiens GN=PCNT PE=1 SV=3 33 1.0
sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase... 33 1.0
sp|P39922|MYS3_HYDAT Myosin heavy chain, clone 203 (Fragment) OS... 32 1.8
sp|Q54340|AMPG_STRLI Aminopeptidase G (Fragment) OS=Streptomyces... 32 1.8
sp|Q5FVJ0|RUFY3_RAT Protein RUFY3 OS=Rattus norvegicus GN=Rufy3 ... 32 2.3
sp|Q7L099|RUFY3_HUMAN Protein RUFY3 OS=Homo sapiens GN=RUFY3 PE=... 32 2.3
sp|Q38442|GP7_BPSPP Minor head structural component GP7 OS=Bacil... 32 2.3
sp|Q4PJT6|T6441_RAT Testis protein T6441 OS=Rattus norvegicus PE... 32 3.0
sp|Q6P926|T6441_MOUSE Testis protein T6441 homolog OS=Mus muscul... 32 3.0
sp|Q9D394|RUFY3_MOUSE Protein RUFY3 OS=Mus musculus GN=Rufy3 PE=... 32 3.0
sp|P31393|PLST_CARAU Plasticin OS=Carassius auratus PE=2 SV=1 32 3.0
sp|Q5R4V2|RUFY3_PONAB Protein RUFY3 OS=Pongo abelii GN=RUFY3 PE=... 31 5.1
sp|P17119|KAR3_YEAST Kinesin-like protein KAR3 OS=Saccharomyces ... 31 5.1
sp|O97237|YGCC1_PLAF7 GRIP and coiled-coil domain-containing pro... 30 8.7
sp|Q4R7I4|T6441_MACFA Testis protein T6441 homolog OS=Macaca fas... 30 8.7
sp|Q86W54|T6441_HUMAN Testis protein T6441 homolog OS=Homo sapie... 30 8.7
sp|B0SPT4|SYA_LEPBP Alanyl-tRNA synthetase OS=Leptospira biflexa... 30 8.7
sp|B0SGD3|SYA_LEPBA Alanyl-tRNA synthetase OS=Leptospira biflexa... 30 8.7
sp|P66427|RS15_CHLTR 30S ribosomal protein S15 OS=Chlamydia trac... 30 8.7
sp|Q3KKJ6|RS15_CHLTA 30S ribosomal protein S15 OS=Chlamydia trac... 30 8.7
sp|Q9Z6Q9|RS15_CHLPN 30S ribosomal protein S15 OS=Chlamydia pneu... 30 8.7
sp|P66428|RS15_CHLMU 30S ribosomal protein S15 OS=Chlamydia muri... 30 8.7
sp|Q822C2|RS15_CHLCV 30S ribosomal protein S15 OS=Chlamydophila ... 30 8.7
sp|Q5L5B5|RS15_CHLAB 30S ribosomal protein S15 OS=Chlamydophila ... 30 8.7
sp|O74424|NU211_SCHPO Nucleoporin nup211 OS=Schizosaccharomyces ... 30 8.7
sp|Q9JLT0|MYH10_RAT Myosin-10 OS=Rattus norvegicus GN=Myh10 PE=1... 30 8.7

>sp|O67124|RAD50_AQUAE Probable DNA double-strand break repair rad50
ATPase OS=Aquifex aeolicus GN=rad50 PE=3 SV=1
Length = 978

Score = 34.7 bits (78), Expect = 0.35
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 8/69 (11%)
Frame = +2

Query: 398 LPSVEAMLKKYREALSNNDEAA--------LEELDVKFQQLEKEKNMYAKQVSTLNDEVL 553
L ++E ++K RE L + + A +EE+D K +L+ KN K+++ L DE+
Sbjct: 253 LENLEKEVEKLREKLEFSRKVAPYVPIAKRIEEIDKKLTELKVRKNKLTKELAVLKDELS 312

Query: 554 SLKERLLRL 580
+E L R+
Sbjct: 313 FAQEELNRI 321


>sp|Q10411|SPO15_SCHPO Sporulation-specific protein 15
OS=Schizosaccharomyces pombe GN=spo15 PE=1 SV=1
Length = 1957

Score = 34.3 bits (77), Expect = 0.46
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 6/65 (9%)
Frame = +2

Query: 404 SVEAMLKKYREA---LSNNDEAALEEL---DVKFQQLEKEKNMYAKQVSTLNDEVLSLKE 565
S++ KK E+ L NN + ++L K QQL+ E+ + ++ STL+DE L+
Sbjct: 606 SLDTSFKKLNESHQELENNHQTITKQLKDTSSKLQQLQLERANFEQKESTLSDENNDLRT 665

Query: 566 RLLRL 580
+LL+L
Sbjct: 666 KLLKL 670


>sp|Q54G05|LRRX1_DICDI Putative leucine-rich repeat-containing protein
DDB_G0290503 OS=Dictyostelium discoideum GN=DDB_G0290503
PE=4 SV=1
Length = 1492

Score = 33.5 bits (75), Expect = 0.79
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = +2

Query: 443 SNNDE--AALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERL 571
+NN+E +EEL K Q LE E N+ V+ ND++ LKE +
Sbjct: 1122 NNNEENIQLIEELKEKLQDLENELNLEKDTVNEKNDDINELKEEI 1166


>sp|P41834|UFE1_YEAST Syntaxin UFE1 OS=Saccharomyces cerevisiae
GN=UFE1 PE=1 SV=2
Length = 346

Score = 33.1 bits (74), Expect = 1.0
Identities = 15/52 (28%), Positives = 29/52 (55%)
Frame = +2

Query: 404 SVEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSL 559
+V+ +K Y E +S + L+ L+ + +L +KN K+V T+N +L +
Sbjct: 224 TVQDEVKHYEETISKLTQEQLQVLETEHSELLNQKNEQLKKVETINKTILDI 275


>sp|O95613|PCNT_HUMAN Pericentrin OS=Homo sapiens GN=PCNT PE=1 SV=3
Length = 3336

Score = 33.1 bits (74), Expect = 1.0
Identities = 15/56 (26%), Positives = 32/56 (57%)
Frame = +2

Query: 410 EAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 577
+A ++K RE L + LE+L+ KF++ EKEK + + + +++ + + +R
Sbjct: 413 QAAIEKLREDLQSEHGRCLEDLEFKFKESEKEKQLELENLQASYEDLKAQSQEEIR 468


>sp|Q54YH4|DHKB_DICDI Hybrid signal transduction histidine kinase B
OS=Dictyostelium discoideum GN=dhkB PE=1 SV=1
Length = 1969

Score = 33.1 bits (74), Expect = 1.0
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3

Query: 216 AEQGPSQSLSQHGNIVPPTLSEHQLRRTPRL*MSNRMPKLASQSMKAQMK 365
+++G S SQH ++ PTLS H + P S + + SQ + Q K
Sbjct: 283 SDEGSDNSKSQHSSVNTPTLSRHNIDSLPESQQSQKQSQQQSQQPQQQNK 332


>sp|P39922|MYS3_HYDAT Myosin heavy chain, clone 203 (Fragment)
OS=Hydra attenuata PE=2 SV=1
Length = 539

Score = 32.3 bits (72), Expect = 1.8
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2

Query: 404 SVEAMLKKYREALSNNDEAA--LEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLR 577
SV + +K +EA DE EEL +LE EK KQ+ TLN+++ E + +
Sbjct: 135 SVLVLEEKIQEAEEKIDELTEKTEELQSNISRLETEKQNRDKQIDTLNEDIRKQDETISK 194

Query: 578 L 580
+
Sbjct: 195 M 195


>sp|Q54340|AMPG_STRLI Aminopeptidase G (Fragment) OS=Streptomyces
lividans GN=pepG PE=3 SV=1
Length = 73

Score = 32.3 bits (72), Expect = 1.8
Identities = 16/31 (51%), Positives = 20/31 (64%)
Frame = -3

Query: 215 RKIREGRHSRAAREAWKGAVSGRLWR*GMRT 123
R++R+GR RAA +W G S R WR G RT
Sbjct: 34 RELRDGR--RAASSSWPGRGSSRRWRPGRRT 62


>sp|Q5FVJ0|RUFY3_RAT Protein RUFY3 OS=Rattus norvegicus GN=Rufy3
PE=1 SV=1
Length = 469

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2

Query: 422 KKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
K Y E L+ + A + L K LEK ++++ N+ +++L+E + R+
Sbjct: 264 KNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERV 316


>sp|Q7L099|RUFY3_HUMAN Protein RUFY3 OS=Homo sapiens GN=RUFY3 PE=1
SV=1
Length = 469

Score = 32.0 bits (71), Expect = 2.3
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = +2

Query: 422 KKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
K Y E L+ + A + L K LEK ++++ N+ +++L+E + R+
Sbjct: 264 KNYVEELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERV 316


tr_hit_id A9NPB5
Definition tr|A9NPB5|A9NPB5_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 58
Score (bit) 50.4
E-value 7.0e-05
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957234|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N07, 5'
(580 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NPB5|A9NPB5_PICSI Putative uncharacterized protein OS=Picea... 50 7e-05
tr|Q9XQC7|Q9XQC7_ARATH GrpE protein OS=Arabidopsis thaliana GN=g... 49 3e-04
tr|Q94K56|Q94K56_ARATH Putative chloroplast GrpE protein OS=Arab... 49 3e-04
tr|Q9C8X4|Q9C8X4_ARATH Putative heat shock protein; 54606-52893 ... 47 6e-04
tr|Q8LA37|Q8LA37_ARATH Putative heat shock protein OS=Arabidopsi... 47 6e-04
tr|B6TXQ6|B6TXQ6_MAIZE Protein grpE OS=Zea mays PE=2 SV=1 45 0.002
tr|B6TLM3|B6TLM3_MAIZE Protein grpE OS=Zea mays PE=2 SV=1 45 0.004
tr|A5BJM9|A5BJM9_VITVI Putative uncharacterized protein OS=Vitis... 45 0.004
tr|Q6K635|Q6K635_ORYSJ Os02g0612000 protein OS=Oryza sativa subs... 44 0.005
tr|B8AFE0|B8AFE0_ORYSI Putative uncharacterized protein OS=Oryza... 44 0.005
tr|A3A900|A3A900_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.005
tr|A9TYF5|A9TYF5_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.007
tr|A9TNJ9|A9TNJ9_PHYPA Predicted protein (Fragment) OS=Physcomit... 42 0.019
tr|B4FLR0|B4FLR0_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.055
tr|A0DEC6|A0DEC6_PARTE Chromosome undetermined scaffold_48, whol... 40 0.072
tr|B0ED53|B0ED53_ENTDI Synaptonemal complex protein, putative OS... 39 0.21
tr|A7Q9Z4|A7Q9Z4_VITVI Chromosome chr8 scaffold_68, whole genome... 38 0.36
tr|A0E891|A0E891_PARTE Chromosome undetermined scaffold_82, whol... 36 1.4
tr|A2FDN3|A2FDN3_TRIVA Putative uncharacterized protein OS=Trich... 35 2.3
tr|B3NG23|B3NG23_DROER GG15186 OS=Drosophila erecta GN=GG15186 P... 35 3.9
tr|B6G542|B6G542_9ACTN Putative uncharacterized protein OS=Colli... 35 4.0
tr|Q7XXP7|Q7XXP7_ORYSJ Os02g0709900 protein OS=Oryza sativa subs... 35 4.0
tr|A3AAL6|A3AAL6_ORYSJ Putative uncharacterized protein OS=Oryza... 35 4.0
tr|A2X8T8|A2X8T8_ORYSI Putative uncharacterized protein OS=Oryza... 35 4.0
tr|A0D580|A0D580_PARTE Chromosome undetermined scaffold_38, whol... 35 4.0
tr|Q1WTN3|Q1WTN3_LACS1 Type I restriction-modification system me... 34 6.8
tr|A8X9U7|A8X9U7_CAEBR Putative uncharacterized protein OS=Caeno... 34 6.8
tr|A7RNK0|A7RNK0_NEMVE Predicted protein OS=Nematostella vectens... 34 6.8
tr|A2FKT9|A2FKT9_TRIVA Viral A-type inclusion protein, putative ... 34 6.8
tr|Q9V217|Q9V217_PYRAB Putative uncharacterized protein OS=Pyroc... 34 6.8

>tr|A9NPB5|A9NPB5_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 338

Score = 50.4 bits (119), Expect = 7e-05
Identities = 22/58 (37%), Positives = 40/58 (68%)
Frame = +2

Query: 407 VEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
V +L+ Y+EA++N+D+ + +++V+ Q +E EKN +K V+ L +E K++LLRL
Sbjct: 106 VPTLLQAYKEAIANSDDTRVSDIEVQLQAIEDEKNALSKLVAALTEEASRGKDKLLRL 163


>tr|Q9XQC7|Q9XQC7_ARATH GrpE protein OS=Arabidopsis thaliana GN=grpE
PE=2 SV=1
Length = 326

Score = 48.5 bits (114), Expect = 3e-04
Identities = 20/58 (34%), Positives = 42/58 (72%)
Frame = +2

Query: 407 VEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
+ A+LK Y+EAL++N+E + E++ + +E EK + A +V++L++E+ ++RL+R+
Sbjct: 112 ITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERDRLIRI 169


>tr|Q94K56|Q94K56_ARATH Putative chloroplast GrpE protein
OS=Arabidopsis thaliana GN=At5g17710 PE=2 SV=1
Length = 324

Score = 48.5 bits (114), Expect = 3e-04
Identities = 20/58 (34%), Positives = 42/58 (72%)
Frame = +2

Query: 407 VEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
+ A+LK Y+EAL++N+E + E++ + +E EK + A +V++L++E+ ++RL+R+
Sbjct: 110 ITALLKSYKEALADNNEGKIAEIEASLKSIEDEKFLLADKVASLSNELSVERDRLIRI 167


>tr|Q9C8X4|Q9C8X4_ARATH Putative heat shock protein; 54606-52893
(Putative heat shock protein) OS=Arabidopsis thaliana
GN=At1g36390 PE=2 SV=1
Length = 279

Score = 47.4 bits (111), Expect = 6e-04
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +2

Query: 407 VEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
V+ +++ Y++AL N DE ++ E++ F ++EKEKN ++V +L+ ++ S KE +RL
Sbjct: 75 VKTLIRSYKQALLNGDETSVTEIETMFCKIEKEKNKMDQKVLSLSMKIASEKEMKIRL 132


>tr|Q8LA37|Q8LA37_ARATH Putative heat shock protein OS=Arabidopsis
thaliana PE=2 SV=1
Length = 279

Score = 47.4 bits (111), Expect = 6e-04
Identities = 21/58 (36%), Positives = 40/58 (68%)
Frame = +2

Query: 407 VEAMLKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
V+ +++ Y++AL N DE ++ E++ F ++EKEKN ++V +L+ ++ S KE +RL
Sbjct: 75 VKTLIRSYKQALLNGDETSVTEIETMFCKIEKEKNKMDQKVLSLSMKIASEKEMKIRL 132


>tr|B6TXQ6|B6TXQ6_MAIZE Protein grpE OS=Zea mays PE=2 SV=1
Length = 328

Score = 45.4 bits (106), Expect = 0.002
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +2

Query: 419 LKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
L+ YREAL N+DEA E++ +E EKN +++ L+ E+ + +ER+LR+
Sbjct: 108 LQSYREALINDDEAKAAEIESLLLSIEDEKNSLLNKITALDAELATQRERILRI 161


>tr|B6TLM3|B6TLM3_MAIZE Protein grpE OS=Zea mays PE=2 SV=1
Length = 328

Score = 44.7 bits (104), Expect = 0.004
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +2

Query: 419 LKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
L+ YREAL N+DEA E++ +E EKN +++ L+ E+ + +ER+LR+
Sbjct: 108 LQSYREALINDDEAKAAEIESFLLSIEDEKNSLLSKITALDVELATQRERILRI 161


>tr|A5BJM9|A5BJM9_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_011922 PE=4 SV=1
Length = 369

Score = 44.7 bits (104), Expect = 0.004
Identities = 22/54 (40%), Positives = 37/54 (68%)
Frame = +2

Query: 419 LKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
L+ Y+EAL +NDE+ E++ + +E EK K+V+ L++E+ S KER+LR+
Sbjct: 144 LRSYKEALVSNDESKAAEIEAFIKFIEDEKIDLEKKVAALSEELSSDKERILRI 197


>tr|Q6K635|Q6K635_ORYSJ Os02g0612000 protein OS=Oryza sativa subsp.
japonica GN=OJ1004_A05.20 PE=4 SV=1
Length = 332

Score = 44.3 bits (103), Expect = 0.005
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +2

Query: 419 LKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
L+ Y+EAL N+DE + E++ +E+EKN ++STL E+ + ++R+LR+
Sbjct: 112 LQSYKEALINDDETKVAEIEDFLFSIEEEKNSLLSKISTLGAELTTERDRILRI 165


>tr|B8AFE0|B8AFE0_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_08039 PE=4 SV=1
Length = 332

Score = 44.3 bits (103), Expect = 0.005
Identities = 20/54 (37%), Positives = 36/54 (66%)
Frame = +2

Query: 419 LKKYREALSNNDEAALEELDVKFQQLEKEKNMYAKQVSTLNDEVLSLKERLLRL 580
L+ Y+EAL N+DE + E++ +E+EKN ++STL E+ + ++R+LR+
Sbjct: 112 LQSYKEALINDDETKVAEIEDFLFSIEEEKNSLLSKISTLGAELTTERDRILRI 165