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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957235
Clone id TST39A01NGRL0027_N08
Library
Length 583
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_N08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAAGGAATGGCGAGTAGCAGTGTTCACGCCATAGCCACGAACATCGCTCTACTCGTAAAG
ACGCCCATCAGCCACGACCCATCACCAGCTAGGCTTCCCTCTTTGAGTCTTGCTGCGCGA
CTCTGCTTGACAGGACGCTTCACAACCAAGGGCACCCGCGGAGGCTCTTTGCACGCCACG
AAGATCTTTGGCATCGAACCGGACCTCCCCGAGATTGATGACGATCTAGACTACGACACA
AGAACAGCAGGAGAGGGCGAGGAGGATTTTTTCCCCTATGGCATTGCAGATGGACACCAT
ATGTACCATGGAGAAGATGCAAACATTAATGTATTGGAAGCTTTTAAAGAGCCATTCATT
GAAGCTGGCGGACCTACTGGCTTTCAAGCTTACTTAGGATGGGGATCTTTGCCCGTTTTT
TACTTGATGGTTTGGTACGGTGTCCAGGTGGAATACATCTTTCTTGCAGCAGTTCTATTT
ATTTTTGCATTTATCGGAATAGAGATGGACAAGCCAGACCTCGATCACGAGTTTCCGCCT
GAGATCTACATGGAGCGTAGGAAGAAAAGGGCTGCAAGAACAG
■■Homology search results ■■ -
sp_hit_id Q2PC93
Definition sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus
Align length 20
Score (bit) 30.8
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957235|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N08, 5'
         (583 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1    31   5.1  
sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE...    31   5.2  
sp|Q19338|MON2_CAEEL Protein MON2 homolog OS=Caenorhabditis eleg...    30   8.7  

>sp|Q2PC93|SSPO_CHICK SCO-spondin OS=Gallus gallus GN=SSPO PE=2 SV=1
          Length = 5255

 Score = 30.8 bits (68), Expect = 5.1
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 285  CRWTPYVPWRRCKH*CIGSF 344
            C W+P+ PW  C+  C GSF
Sbjct: 4611 CLWSPWGPWGPCQQPCSGSF 4630


>sp|O88778|BSN_RAT Protein bassoon OS=Rattus norvegicus GN=Bsn PE=1
            SV=3
          Length = 3938

 Score = 30.8 bits (68), Expect = 5.2
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = -1

Query: 319  HLLHGTYGVHLQCHRGKNPPRPLLLFLCRSLDRHQSRGGPVRCQRSSWRAKSLRGCP 149
            H  HG +G H   H G+ P R       R + RH++R  P      + + K   G P
Sbjct: 3639 HRHHGDHGRHSGRHAGEEPGRRAARPHARDMGRHETRPHPQASPAPAMQKKGQPGYP 3695


>sp|Q19338|MON2_CAEEL Protein MON2 homolog OS=Caenorhabditis elegans
            GN=F11A10.4 PE=2 SV=2
          Length = 1646

 Score = 30.0 bits (66), Expect = 8.7
 Identities = 24/75 (32%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
 Frame = +3

Query: 105  ESCCATLLDRTLHNQGHPRRLFARHEDLWHRTGPPRD**RSRLRHKNSRRGRGGFFPLWH 284
            +S C TLL +T+   GH  R  A H  +W    P  D  RS+ R  ++ +  G    + H
Sbjct: 990  KSACQTLL-QTVTAHGHALRSAAWHSVIWQIMIPLLDKVRSQTRCASTEKSNGELI-MHH 1047

Query: 285  CRWTPYVPW-RRCKH 326
             R T    W   C H
Sbjct: 1048 SRDTEQKQWTETCIH 1062
tr_hit_id Q5JK31
Definition tr|Q5JK31|Q5JK31_ORYSJ cDNA clone:006-207-H04, full insert sequence OS=Oryza sativa subsp. japonica
Align length 110
Score (bit) 70.9
E-value 5.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957235|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N08, 5'
         (583 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q5JK31|Q5JK31_ORYSJ cDNA clone:006-207-H04, full insert seque...    71   5e-11
tr|Q5JK30|Q5JK30_ORYSJ Putative uncharacterized protein OSJNBa00...    71   5e-11
tr|Q0JGD3|Q0JGD3_ORYSJ Os01g0929100 protein (Fragment) OS=Oryza ...    71   5e-11
tr|B8A8R7|B8A8R7_ORYSI Putative uncharacterized protein OS=Oryza...    71   5e-11
tr|A7NWZ1|A7NWZ1_VITVI Chromosome chr5 scaffold_2, whole genome ...    69   3e-10
tr|A5AI11|A5AI11_VITVI Putative uncharacterized protein OS=Vitis...    68   3e-10
tr|B4G054|B4G054_MAIZE Putative uncharacterized protein OS=Zea m...    67   7e-10
tr|B7FLH5|B7FLH5_MEDTR Putative uncharacterized protein OS=Medic...    62   2e-08
tr|A9TI07|A9TI07_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|Q9FG89|Q9FG89_ARATH Genomic DNA, chromosome 5, P1 clone:MQD19...    48   4e-04
tr|Q8LE15|Q8LE15_ARATH Putative uncharacterized protein OS=Arabi...    48   4e-04
tr|A3A165|A3A165_ORYSJ Putative uncharacterized protein OS=Oryza...    35   3.1  
tr|Q16TK0|Q16TK0_AEDAE Filamin, putative (Fragment) OS=Aedes aeg...    35   3.1  
tr|Q16FY6|Q16FY6_AEDAE Filamin, putative OS=Aedes aegypti GN=AAE...    35   3.1  

>tr|Q5JK31|Q5JK31_ORYSJ cDNA clone:006-207-H04, full insert sequence
           OS=Oryza sativa subsp. japonica GN=OSJNBa0052O12.18-1
           PE=2 SV=1
          Length = 233

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 42/110 (38%), Positives = 49/110 (44%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVF 420
           RT G   +DF  YG+ DGHH Y+         E   E + EA  P GFQA + W   P  
Sbjct: 88  RTNGVSPDDF-EYGVYDGHHTYNETQDKKGFWEDVSEWYQEAEPPQGFQALISWLFPPAI 146

Query: 421 YLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
            L + + V  EY               EMDKPD  H F PEIYM  R  R
Sbjct: 147 ILGMAFNVPGEYLYIGAAVFVVVFCVIEMDKPDKPHNFEPEIYMMERSAR 196


>tr|Q5JK30|Q5JK30_ORYSJ Putative uncharacterized protein
           OSJNBa0052O12.18-2 OS=Oryza sativa subsp. japonica
           GN=OSJNBa0052O12.18-2 PE=4 SV=1
          Length = 177

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 42/110 (38%), Positives = 49/110 (44%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVF 420
           RT G   +DF  YG+ DGHH Y+         E   E + EA  P GFQA + W   P  
Sbjct: 32  RTNGVSPDDF-EYGVYDGHHTYNETQDKKGFWEDVSEWYQEAEPPQGFQALISWLFPPAI 90

Query: 421 YLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
            L + + V  EY               EMDKPD  H F PEIYM  R  R
Sbjct: 91  ILGMAFNVPGEYLYIGAAVFVVVFCVIEMDKPDKPHNFEPEIYMMERSAR 140


>tr|Q0JGD3|Q0JGD3_ORYSJ Os01g0929100 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os01g0929100 PE=4 SV=1
          Length = 176

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 42/110 (38%), Positives = 49/110 (44%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVF 420
           RT G   +DF  YG+ DGHH Y+         E   E + EA  P GFQA + W   P  
Sbjct: 31  RTNGVSPDDF-EYGVYDGHHTYNETQDKKGFWEDVSEWYQEAEPPQGFQALISWLFPPAI 89

Query: 421 YLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
            L + + V  EY               EMDKPD  H F PEIYM  R  R
Sbjct: 90  ILGMAFNVPGEYLYIGAAVFVVVFCVIEMDKPDKPHNFEPEIYMMERSAR 139


>tr|B8A8R7|B8A8R7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05039 PE=4 SV=1
          Length = 749

 Score = 70.9 bits (172), Expect = 5e-11
 Identities = 42/110 (38%), Positives = 49/110 (44%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVF 420
           RT G   +DF  YG+ DGHH Y+         E   E + EA  P GFQA + W   P  
Sbjct: 604 RTNGVSPDDF-EYGVYDGHHTYNETQDKKGFWEDVSEWYQEAEPPQGFQALISWLFPPAI 662

Query: 421 YLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
            L + + V  EY               EMDKPD  H F PEIYM  R  R
Sbjct: 663 ILGMAFNVPGEYLYIGAAVFVVVFCVIEMDKPDKPHNFEPEIYMMERSAR 712


>tr|A7NWZ1|A7NWZ1_VITVI Chromosome chr5 scaffold_2, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00020113001
           PE=4 SV=1
          Length = 218

 Score = 68.6 bits (166), Expect = 3e-10
 Identities = 40/106 (37%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +1

Query: 244 TAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVFY 423
           T G   EDF  YG  DGHH Y   D       A  E +     PTGFQ ++ W  LP   
Sbjct: 76  TNGISSEDF-KYGYYDGHHTYFEGDDKGTFWGAIAEDYAAVEPPTGFQGFISWAFLPAIA 134

Query: 424 LMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIY-MER 558
             +++ V  EY               EMDKPD  H F P+IY MER
Sbjct: 135 AGMYFNVPGEYLYIGAALFAAVFCIIEMDKPDKPHNFEPQIYNMER 180


>tr|A5AI11|A5AI11_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_032729 PE=4 SV=1
          Length = 223

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 40/106 (37%), Positives = 47/106 (44%), Gaps = 1/106 (0%)
 Frame = +1

Query: 244 TAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVFY 423
           T G   EDF  YG  DGHH Y   D       A  E +     PTGFQ ++ W  LP   
Sbjct: 76  TNGISPEDF-KYGYYDGHHTYFEGDDKGTFWGAIAEDYAAVEPPTGFQGFISWAFLPAIA 134

Query: 424 LMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIY-MER 558
             +++ V  EY               EMDKPD  H F P+IY MER
Sbjct: 135 AGMYFNVPGEYLYIGAALFAAVFCIIEMDKPDKPHNFEPQIYNMER 180


>tr|B4G054|B4G054_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 229

 Score = 67.0 bits (162), Expect = 7e-10
 Identities = 42/110 (38%), Positives = 46/110 (41%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYHGEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVF 420
           RT G   EDF  YG  DGHH Y          E   E + EA  P GFQA + W   P  
Sbjct: 84  RTNGISPEDF-EYGKYDGHHTYFEGQDKKGFWEDVSEWYQEAEPPQGFQALISWAFPPAI 142

Query: 421 YLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
            L + + V  EY               EM KPD  H F PEIYM  R  R
Sbjct: 143 ILGMAFNVPGEYLYIGAAVFIVVFCVIEMGKPDKPHNFEPEIYMMERSAR 192


>tr|B7FLH5|B7FLH5_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 212

 Score = 62.4 bits (150), Expect = 2e-08
 Identities = 42/108 (38%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
 Frame = +1

Query: 241 RTAGEGEEDFFPYGIADGHHMYH-GEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPV 417
           RT G   E+F  YGI DGHH ++ GE+    V  A  +  I  G PTGFQ  +     P 
Sbjct: 68  RTNGIPPEEF-EYGIFDGHHTFNEGEEKEGTVWGAIMDDVIAVGPPTGFQGLISRLFPPA 126

Query: 418 FYLMVWYGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIY-MER 558
               V++ V  EY               EMDKPD  H F P+IY MER
Sbjct: 127 IAAGVFFDVPGEYLFIGAGIFTIVFCIIEMDKPDQPHHFEPQIYNMER 174


>tr|A9TI07|A9TI07_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_170186 PE=4 SV=1
          Length = 217

 Score = 58.9 bits (141), Expect = 2e-07
 Identities = 35/97 (36%), Positives = 44/97 (45%), Gaps = 1/97 (1%)
 Frame = +1

Query: 262 EDFFPYGIADGHHMYH-GEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVFYLMVWY 438
           ED FP+G ADG H +H G+D      +  KE F  +GGP G Q  + W  +P     V +
Sbjct: 119 EDLFPFGKADGAHTWHEGDDGTW--WDGIKEVFETSGGPVGAQGAISWLFVPGLIAGVVF 176

Query: 439 GVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIY 549
            V  EY               EM KPD    F PE+Y
Sbjct: 177 NVDQEYLFLYTALFIFAFIGMEMAKPDKPSHFEPEMY 213


>tr|Q9FG89|Q9FG89_ARATH Genomic DNA, chromosome 5, P1 clone:MQD19
           (Putative uncharacterized protein At5g43750)
           OS=Arabidopsis thaliana GN=At5g43750 PE=2 SV=1
          Length = 212

 Score = 48.1 bits (113), Expect = 4e-04
 Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 1/105 (0%)
 Frame = +1

Query: 259 EEDFFPYGIADGHHMYH-GEDANINVLEAFKEPFIEAGGPTGFQAYLGWGSLPVFYLMVW 435
           E + F YG  DG H Y+ GE        A  +         GFQ  +    LP   L ++
Sbjct: 73  EMEDFKYGYYDGAHTYYEGEVQKGTFWGAIADDIAAVDQTNGFQGLISCMFLPAIALGMY 132

Query: 436 YGVQVEYXXXXXXXXXXXXXXXEMDKPDLDHEFPPEIYMERRKKR 570
           +    EY               EMDKPD  H F P+IY   R  R
Sbjct: 133 FDAPGEYLFIGAALFTVVFCIIEMDKPDQPHNFEPQIYKLERGAR 177