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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957244
Clone id TST39A01NGRL0027_N19
Library
Length 604
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_N19. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCCAGATTGATATGGATCCCAACAAGATGCTACAGCCTGGAGACCCCAATTCTATGCAGG
CCATTATTAAGGATGTCATGCCTGTAGGTTACTTCGTCTCTCTGCCCACAGGCAGAGATG
GGTATCTTCCAGCAGATGACTTGGTCTTTACAGGTGGGCTTGCTATTCTGCGCAAGCTTT
TCAAGGAGGGTCAAGAGATTACTGTGCGCATTGTTTGTCGCGGTGGGGCAGGAAGGGAGA
TTGTTTCTGTGAAAAAGCCTGAGTTTGCCCCTCCCAGTGAGCAGAAGACCATTGAAAGCT
TGCGGCTGCATTTCGAGAATGAAAAGAAGAACAGGATGAATCCTCGGAACAGGCGGCGCC
AGCAGTACAACAATTACTGACAAGATCTGTGATTTGCCTGAGGCTTGCTACCTATTCAAG
CTGGACTCCTGCTGCTTTTATCGATAAGTTATGTCCTTTGGTGTTCGGTCACTTGGCTGT
TAAGTAGGCTAGCATGGTCAGATATTAAGTAAGTGGAGTCCTTGCTCAGGTGTTGGGTGT
TACTAAATCGTGTCCTGTGTTGACTATGCCGGCAGATGATTTTTGAAGCAGCTCTATGGT
TTTG
■■Homology search results ■■ -
sp_hit_id O14269
Definition sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c OS=Schizosaccharomyces pombe
Align length 65
Score (bit) 33.1
E-value 1.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957244|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N19, 5'
         (604 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c OS=Schizos...    33   1.1  
sp|O74765|SYPM_SCHPO Probable prolyl-tRNA synthetase, mitochondr...    33   1.5  
sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase OS...    32   1.9  
sp|Q0IBR6|COBQ_SYNS3 Cobyric acid synthase OS=Synechococcus sp. ...    32   1.9  
sp|A6NMK8|YE035_HUMAN Uncharacterized protein LOC100131897 OS=Ho...    32   2.5  
sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase OS...    32   2.5  
sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase OS...    32   2.5  
sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase OS...    32   3.2  
sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase OS...    31   4.2  
sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase OS...    31   4.2  
sp|A6LFK9|PNP_PARD8 Polyribonucleotide nucleotidyltransferase OS...    31   5.5  
sp|Q12296|MAM3_YEAST Protein MAM3 OS=Saccharomyces cerevisiae GN...    31   5.6  
sp|Q6K8Z4|FH7_ORYSJ Formin-like protein 7 OS=Oryza sativa subsp....    30   7.3  
sp|Q31GJ9|PNP_THICR Polyribonucleotide nucleotidyltransferase OS...    30   9.4  
sp|A6VPH1|MTNN_ACTSZ 5'-methylthioadenosine/S-adenosylhomocystei...    30   9.4  

>sp|O14269|YFPE_SCHPO Uncharacterized protein C7D4.14c
           OS=Schizosaccharomyces pombe GN=SPAC7D4.14c PE=1 SV=1
          Length = 551

 Score = 33.1 bits (74), Expect = 1.1
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 17/65 (26%)
 Frame = -1

Query: 241 ISLPAPPRQTMRTVIS*PSLKSLR-----------------RIASPPVKTKSSAGRYPSL 113
           +S P+PPR T   V   P LK L                  R+ SPP  T+ S+ R+PS+
Sbjct: 244 VSAPSPPRATNVAV---PCLKHLESSEQGNNLLINKAFTSPRLPSPPQSTRPSSTRFPSV 300

Query: 112 PVGRE 98
           P+  E
Sbjct: 301 PLSDE 305


>sp|O74765|SYPM_SCHPO Probable prolyl-tRNA synthetase, mitochondrial
           OS=Schizosaccharomyces pombe GN=SPBC24C6.03 PE=2 SV=1
          Length = 425

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 12/79 (15%)
 Frame = -3

Query: 233 SCPTATNNAHSNLLTLLEKLAQNSKPTCKDQV------------ICWKIPISACGQRDEV 90
           +CP+   + +S +L L +  +  S P C DQ+               KI  S      EV
Sbjct: 228 TCPSCHYSTNSEMLDLSKTSSDISCPNCNDQLTSTTAIEVGHAFYLGKIYSSKFNATVEV 287

Query: 89  TYRHDILNNGLHRIGVSRL 33
             + ++L+ G + IGVSRL
Sbjct: 288 KNKQEVLHMGCYGIGVSRL 306


>sp|A6L0A5|PNP_BACV8 Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 /
           NCTC 11154) GN=pnp PE=3 SV=1
          Length = 711

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 17/50 (34%), Positives = 26/50 (52%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           ++ VMP G FV    G+DG L   ++ +     I     KEG EI V+++
Sbjct: 636 VRSVMPYGVFVEFLPGKDGLLHISEIDWKRLETIEEAGLKEGDEIEVKLL 685


>sp|Q0IBR6|COBQ_SYNS3 Cobyric acid synthase OS=Synechococcus sp.
           (strain CC9311) GN=cobQ PE=3 SV=1
          Length = 508

 Score = 32.3 bits (72), Expect = 1.9
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 194 LTLLEKLAQNSKPTCKDQVICWKIPISACGQRDEVTYRHDILNNG 60
           LT +   ++  KP C+D+ + W  P S  G     TY H +  +G
Sbjct: 408 LTTINNASETCKPLCRDEELGWVKPFSDHGGLVAGTYLHGVFESG 452


>sp|A6NMK8|YE035_HUMAN Uncharacterized protein LOC100131897 OS=Homo
           sapiens PE=2 SV=1
          Length = 535

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 251 HRNNLPSCPTATNNAHSNLLTLLEKLAQNSKPTCKDQ 141
           H      CP+++NN H NL++L    A  S P C++Q
Sbjct: 322 HPGRASDCPSSSNN-HQNLVSLKTNSASKSAPGCQEQ 357


>sp|Q64N73|PNP_BACFR Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q5L7Z7|PNP_BACFN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343)
           GN=pnp PE=3 SV=1
          Length = 708

 Score = 32.0 bits (71), Expect = 2.5
 Identities = 15/50 (30%), Positives = 26/50 (52%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           ++ +MP G FV    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFVEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q8A4N6|PNP_BACTN Polyribonucleotide nucleotidyltransferase
           OS=Bacteroides thetaiotaomicron GN=pnp PE=3 SV=1
          Length = 708

 Score = 31.6 bits (70), Expect = 3.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           ++ +MP G F+    G+DG L   ++ +     +     KEG EI V+++
Sbjct: 636 VRSIMPYGAFIEFLPGKDGLLHISEIDWKRLETVEEAGIKEGDEIEVKLI 685


>sp|Q30TH2|PNP_SULDN Polyribonucleotide nucleotidyltransferase
           OS=Sulfurimonas denitrificans (strain ATCC 33889 / DSM
           1251) GN=pnp PE=3 SV=1
          Length = 721

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = +3

Query: 57  QAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           + I+K ++  G F+ LP G DG L     +    +  +  + KEG+EI V I+
Sbjct: 658 KGIVKKIVEFGAFIELPDGVDGLLHISK-ISDQRVEKVSDILKEGEEINVEIL 709


>sp|A5URV5|PNP_ROSS1 Polyribonucleotide nucleotidyltransferase
           OS=Roseiflexus sp. (strain RS-1) GN=pnp PE=3 SV=1
          Length = 747

 Score = 31.2 bits (69), Expect = 4.2
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = +3

Query: 75  VMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIV 215
           +MP G FV+L  G+DG +   +L   G +  +  + K G EI V ++
Sbjct: 639 IMPFGAFVNLAPGKDGMVHVSEL-DVGRVENVEDVIKMGDEINVMVI 684
tr_hit_id A7PEK9
Definition tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome shotgun sequence OS=Vitis vinifera
Align length 84
Score (bit) 40.0
E-value 0.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957244|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_N19, 5'
         (604 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genom...    40   0.10 
tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton th...    40   0.14 
tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylas...    39   0.18 
tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein OS=Bacte...    39   0.30 
tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P OS=Prosthecochl...    37   1.2  
tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reduct...    36   1.5  
tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter...    36   2.0  
tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein OS=Thermoto...    36   2.0  
tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein OS=Hydrogen...    35   3.4  
tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein OS=Exiguoba...    35   3.4  
tr|A4XKP1|A4XKP1_CALS8 Hydroxymethylbutenyl pyrophosphate reduct...    34   5.7  
tr|A0PYT7|A0PYT7_CLONN Leucine Rich Repeat domain protein OS=Clo...    34   5.7  
tr|B5YH71|B5YH71_THEYD 30S ribosomal protein S1 OS=Thermodesulfo...    34   7.5  
tr|B2QDR6|B2QDR6_9BACL RNA binding S1 domain protein OS=Exiguoba...    34   7.5  
tr|Q4E0X0|Q4E0X0_TRYCR Putative uncharacterized protein OS=Trypa...    34   7.5  
tr|Q4CS89|Q4CS89_TRYCR Putative uncharacterized protein OS=Trypa...    33   9.8  

>tr|A7PEK9|A7PEK9_VITVI Chromosome chr11 scaffold_13, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00016702001
           PE=4 SV=1
          Length = 553

 Score = 40.0 bits (92), Expect = 0.10
 Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 1/84 (1%)
 Frame = +3

Query: 54  MQAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTG-GLAILRKLFKEGQEITVRIVCRGGA 230
           ++  +K++   G F+SLP G +G+LP  +    G G  +     + GQE++VR++ R   
Sbjct: 266 LEGTVKNLNRAGAFISLPEGEEGFLPTSEEADEGFGNLMGGSSLQVGQEVSVRVL-RISR 324

Query: 231 GREIVSVKKPEFAPPSEQKTIESL 302
           G+  +++KK E A   + K  E +
Sbjct: 325 GQVTLTMKKEEDAEKLDLKLGEGV 348


>tr|B3QSU3|B3QSU3_CHLT3 Ribosomal protein S1 OS=Chloroherpeton
           thalassium (strain ATCC 35110 / GB-78) GN=Ctha_0115 PE=4
           SV=1
          Length = 616

 Score = 39.7 bits (91), Expect = 0.14
 Identities = 22/82 (26%), Positives = 42/82 (51%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIVCRGGAGREIV 245
           I  ++  G  V LP+G DG++PA  L+  GG+  +   FK G E+ ++++      + I+
Sbjct: 486 IAQIIEKGVIVELPSGVDGFVPASHLL-QGGVRDINASFKVGDELPLKVIEFDRENKRII 544

Query: 246 SVKKPEFAPPSEQKTIESLRLH 311
                 F   S+++  E ++ H
Sbjct: 545 LSALEYFKGKSKEEIEEYMKQH 566


>tr|A6E805|A6E805_9SPHI Polynucleotide phosphorylase/polyadenylase
           OS=Pedobacter sp. BAL39 GN=PBAL39_00932 PE=4 SV=1
          Length = 715

 Score = 39.3 bits (90), Expect = 0.18
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 7/79 (8%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIVCRGGAGREIV 245
           +K +MP G FV +  G+DG L   ++ +T  L  +  +FKEG ++ V+++     G+  +
Sbjct: 636 VKSIMPFGAFVEIMPGKDGLLHISEIDWT-RLETMDGVFKEGDKLQVKLLDIDKQGKMKL 694

Query: 246 SVK-------KPEFAPPSE 281
           S K       KPE AP ++
Sbjct: 695 SRKVLLPRPPKPEGAPANK 713


>tr|A6NQP1|A6NQP1_9BACE Putative uncharacterized protein
           OS=Bacteroides capillosus ATCC 29799 GN=BACCAP_00512
           PE=4 SV=1
          Length = 150

 Score = 38.5 bits (88), Expect = 0.30
 Identities = 21/63 (33%), Positives = 36/63 (57%)
 Frame = +3

Query: 87  GYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIVCRGGAGREIVSVKKPEF 266
           G FVSLP G+ G +   ++ ++  +  ++   KEGQE+ V+++     GR  +S+KK   
Sbjct: 20  GAFVSLPEGKSGLVHISEIAYSY-VNDVKDYLKEGQEVKVKVIGIDENGRINLSIKKAMD 78

Query: 267 APP 275
            PP
Sbjct: 79  PPP 81


>tr|A4SGB6|A4SGB6_PROVI SSU ribosomal protein S1P
           OS=Prosthecochloris vibrioformis (strain DSM 265)
           GN=Cvib_1514 PE=4 SV=1
          Length = 602

 Score = 36.6 bits (83), Expect = 1.2
 Identities = 26/90 (28%), Positives = 43/90 (47%)
 Frame = +3

Query: 60  AIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIVCRGGAGRE 239
           A I  ++  G  V LP   DG++PA  L+  GG+  +   FK G  + +R++      + 
Sbjct: 492 AEISQIIEKGVIVILPGDVDGFVPATHLL-QGGVKDIHSSFKIGDALPLRVIEFDKENKR 550

Query: 240 IVSVKKPEFAPPSEQKTIESLRLHFENEKK 329
           I+ +   E+     ++ IES      NEKK
Sbjct: 551 II-LSALEYFKDKSKEEIESYLQAHPNEKK 579


>tr|A6LNG6|A6LNG6_THEM4 Hydroxymethylbutenyl pyrophosphate reductase
           OS=Thermosipho melanesiensis (strain BI429 / DSM 12029)
           GN=Tmel_1623 PE=4 SV=1
          Length = 810

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +3

Query: 66  IKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEG 191
           +K +MP G+FV+L  G DG++  DD VF G    ++ +  EG
Sbjct: 545 VKKIMPYGFFVNLEPGIDGFVHIDD-VFWGKRGNIKDIISEG 585


>tr|A7I0M8|A7I0M8_CAMHC 30S ribosomal protein S1 OS=Campylobacter
           hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 /
           CH001A) GN=CHAB381_0481 PE=4 SV=1
          Length = 557

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
 Frame = +3

Query: 30  LQPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVR 209
           L+ GD  ++Q  + ++ P G FV L    +G+L   ++ +   +   +    EGQEI V 
Sbjct: 284 LEVGD--TIQVTVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDFISEGQEINVE 341

Query: 210 IVCRGGAGREI-VSVK 254
           +V   G  R + VS+K
Sbjct: 342 VVEINGDDRRLRVSLK 357


>tr|B6YKM5|B6YKM5_9BACT RNA binding S1 domain protein
           OS=Thermotogales bacterium TBF 19.5.1 GN=KoleDRAFT_0875
           PE=4 SV=1
          Length = 572

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = +3

Query: 3   QIDMDPNKMLQPGDP--NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRK 176
           Q+  DP   ++   P  + ++ ++K ++P G+FV +  G +G +   ++ +      L++
Sbjct: 265 QLQEDPWNTVEEKYPVGSVVEGVVKSIVPFGFFVMIEPGVEGLVHISEVFWGNVRRDLKE 324

Query: 177 LFKEGQEITVRI 212
           L +EG  + V+I
Sbjct: 325 LIREGDRVKVKI 336


>tr|B4U6I5|B4U6I5_HYDS0 RNA binding S1 domain protein
           OS=Hydrogenobaculum sp. (strain Y04AAS1)
           GN=HY04AAS1_0061 PE=4 SV=1
          Length = 525

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 20/61 (32%), Positives = 32/61 (52%)
 Frame = +3

Query: 33  QPGDPNSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRI 212
           +PG    ++  +K+V P G F+ LP G DG LP  ++     L       + GQ ITV++
Sbjct: 423 KPGQ--QVELAVKEVRPFGTFLGLPEGIDGLLPISEIPKNTNL-------EPGQNITVKV 473

Query: 213 V 215
           +
Sbjct: 474 L 474


>tr|B1YGQ3|B1YGQ3_EXIS2 RNA binding S1 domain protein
           OS=Exiguobacterium sibiricum (strain DSM 17290 / JCM
           13490 / 255-15) GN=Exig_0049 PE=4 SV=1
          Length = 176

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 22/79 (27%), Positives = 39/79 (49%)
 Frame = +3

Query: 48  NSMQAIIKDVMPVGYFVSLPTGRDGYLPADDLVFTGGLAILRKLFKEGQEITVRIVCRGG 227
           + +Q  +  +   G FV LPTG+ G +   + V    +  +  +   GQEITV+++    
Sbjct: 7   SKVQGKVTGITNFGAFVELPTGKTGLVHISE-VADSYVKDINDVLTVGQEITVKVLSVEN 65

Query: 228 AGREIVSVKKPEFAPPSEQ 284
            G+  +S+KK    P  E+
Sbjct: 66  DGKIGLSIKKAVDRPEGER 84