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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957254
Clone id TST39A01NGRL0027_O05
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_O05. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATCACATCTTACAGCTGCCGCCTTTGGCATGGTAGCTGCGAAGAAATGTTGTATACTGAT
GTGTCAGAAAGCTCCGTCAACGGCATTGATAGAAGTGTACATGGGGCTACTCCTCAGCAG
TTTTTTGTAACTGGTGGCATGGCTCCCTCTTTAGCTCACTCTCTTGATCCTCACATTAGC
CTTTGCAATAACAATTGGTCAGTACAGTCGGTGGCAGTCGATCCAAAGGAGCACGTTCAG
GGTTTGCGAAGGTCCTTACTCTTTGAAAATCGTGGGTTTGAGAACCTGGTGGTGTCCAGT
CCAGTCACGGATGGAGACAAGCCCTTCATATCAGTCGCTTACAGCACAGTTCTTTCTCCA
ATAACATTAGATAAGGGAGAGTCTTGGAGAGGTGCGCAGATTCTGCTTCCAGATGTGAAT
TAAGGAAGCTGTGAGCTTCGATACAATGCTGTAGAATGAGTTTGATGATCGGCTGGTTAT
CCAAACTAGCCTGACTTCAGGGGCCCTCACCAAGCCGAGTTTCACTTTACAAGGTTTCTT
CACATGTATAGTGTCGTATCGATCCAGATTTAAGGCTGTGATACCATGACGACGCCCCAT
TATCATGCACCTGCCGCATTTTCATCAAAAAAGCAGCCCTTTCTCTC
■■Homology search results ■■ -
sp_hit_id P40550
Definition sp|P40550|PDR11_YEAST ATP-dependent permease PDR11 OS=Saccharomyces cerevisiae
Align length 121
Score (bit) 32.0
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957254|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_O05, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40550|PDR11_YEAST ATP-dependent permease PDR11 OS=Saccharomy...    32   2.9  
sp|Q3B6X8|RNH2_PELLD Ribonuclease HII OS=Pelodictyon luteolum (s...    31   4.9  
sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic OS=Caenorha...    31   4.9  

>sp|P40550|PDR11_YEAST ATP-dependent permease PDR11 OS=Saccharomyces
            cerevisiae GN=PDR11 PE=1 SV=3
          Length = 1411

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 31/121 (25%), Positives = 54/121 (44%), Gaps = 6/121 (4%)
 Frame = +1

Query: 64   SESSVNGIDRSVHGATP-QQFFVTGGMAPSLAHSLDPHISLCN-----NNWSVQSVAVDP 225
            ++S++   D      TP   F  +    PS++H  D   ++ +     NN + +SVA++ 
Sbjct: 687  NKSAITNNDGVCTPKTPIANFSTSSSSVPSVSHQYDTDYNIKHPDETVNNHTKESVAMET 746

Query: 226  KEHVQGLRRSLLFENRGFENLVVSSPVTDGDKPFISVAYSTVLSPITLDKGESWRGAQIL 405
            ++HV      + ++N  +         T GDK  I+ A   + S +T   GES  G   L
Sbjct: 747  QKHV------ISWKNINY---------TIGDKKLINDASGYISSGLTALMGESGAGKTTL 791

Query: 406  L 408
            L
Sbjct: 792  L 792


>sp|Q3B6X8|RNH2_PELLD Ribonuclease HII OS=Pelodictyon luteolum
           (strain DSM 273) GN=rnhB PE=3 SV=1
          Length = 208

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
 Frame = +1

Query: 139 MAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQGLRRSLLFENRGFENLVVSSP--VTD 312
           + PSL   L P I      W+V++V  +  + +  LR ++L  NR  E+L       + D
Sbjct: 61  LTPSLRRELAPAIREEAECWAVEAVDHETIDRINILRATMLAMNRAAESLPRQPDLLLID 120

Query: 313 GDK--PFISVAYSTVL 354
           G++  P I V Y T++
Sbjct: 121 GNRFTPNIPVPYQTIV 136


>sp|Q19020|DYHC_CAEEL Dynein heavy chain, cytoplasmic
            OS=Caenorhabditis elegans GN=dhc-1 PE=2 SV=1
          Length = 4568

 Score = 31.2 bits (69), Expect = 4.9
 Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
 Frame = -3

Query: 585  GITALNLDRYD----TIHVKKPCKVKL-GLVRAPEVRLV-WITSRSSNSFYSIVSKLTAS 424
            GITA++++  D      H ++  KV L  +V   +VR+  W+ +  +   +++  +L AS
Sbjct: 1627 GITAIDINEEDRSITAFHSREGEKVDLVKIVSTKDVRINDWLQALEAEMKHTLARQLAAS 1686

Query: 423  LIHIWKQNLRT 391
            L H  K N++T
Sbjct: 1687 LTHFSKMNIQT 1697
tr_hit_id A2Q5N9
Definition tr|A2Q5N9|A2Q5N9_MEDTR Galactose mutarotase-like OS=Medicago truncatula
Align length 51
Score (bit) 40.8
E-value 0.071
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957254|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0027_O05, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A2Q5N9|A2Q5N9_MEDTR Galactose mutarotase-like OS=Medicago tru...    41   0.071
tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12...    39   0.27 
tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein OS=Arabi...    39   0.27 
tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1 (Puta...    39   0.27 
tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome...    39   0.27 
tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis...    39   0.27 
tr|A9SKF3|A9SKF3_PHYPA Predicted protein OS=Physcomitrella paten...    38   0.60 
tr|A3UWP9|A3UWP9_VIBSP Putative uncharacterized protein OS=Vibri...    37   0.79 
tr|A7PW57|A7PW57_VITVI Chromosome chr8 scaffold_34, whole genome...    36   2.3  
tr|Q94AQ8|Q94AQ8_ARATH Putative uncharacterized protein At1g6477...    35   3.0  
tr|B2IXJ8|B2IXJ8_NOSP7 Beta-ketoacyl synthase OS=Nostoc punctifo...    35   3.9  
tr|A7SEF8|A7SEF8_NEMVE Predicted protein OS=Nematostella vectens...    35   3.9  

>tr|A2Q5N9|A2Q5N9_MEDTR Galactose mutarotase-like OS=Medicago
           truncatula GN=MtrDRAFT_AC167711g2v2 PE=4 SV=1
          Length = 355

 Score = 40.8 bits (94), Expect = 0.071
 Identities = 20/51 (39%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
 Frame = +1

Query: 274 GFENLVVSSPVTDGDKP----FISVAYSTVLSPITLDKGESWRGAQILLPD 414
           GFE++ VSSP +  DK     F+    +++L P+T++ GE +RGAQ++  D
Sbjct: 302 GFEDIYVSSPGSMSDKYGRDYFVCTGPASILEPVTVNPGEEFRGAQVIEHD 352


>tr|Q9C503|Q9C503_ARATH Putative uncharacterized protein F7A10.12
           (Putative uncharacterized protein T18I3.2)
           OS=Arabidopsis thaliana GN=T18I3.2 PE=4 SV=1
          Length = 354

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHIS 180
           ITSY  R+WHG   E+L+T V +               ++  + GG++ +   S    IS
Sbjct: 104 ITSYKVRVWHGGKVELLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS 150

Query: 181 LCNNNWSVQSVAVDPKEHVQ-GLRRS 255
               +W +Q ++ D K+ VQ  LRRS
Sbjct: 151 ----DWRLQGISGDSKDCVQMELRRS 172



 Score = 34.3 bits (77), Expect = 6.7
 Identities = 18/56 (32%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
 Frame = +1

Query: 238 QGLRRSLLFENRGFENLVVSSPVTDGDK----PFISVAYSTVLSPITLDKGESWRG 393
           +G R S++    GFE + + SP +  +      ++ +  S++LSPI+L+ G  WRG
Sbjct: 290 RGRRNSVVVGREGFEEVYMYSPGSRLESYTKSAYVCIGPSSLLSPISLESGCVWRG 345


>tr|Q8LBH1|Q8LBH1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 354

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHIS 180
           ITSY  R+WHG   E+L+T V +               ++  + GG++ +   S    IS
Sbjct: 104 ITSYKVRVWHGGKVELLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS 150

Query: 181 LCNNNWSVQSVAVDPKEHVQ-GLRRS 255
               +W +Q ++ D K+ VQ  LRRS
Sbjct: 151 ----DWRLQGISGDSKDCVQMELRRS 172


>tr|Q3ECP4|Q3ECP4_ARATH Uncharacterized protein At1g55370.1
           (Putative uncharacterized protein At1g55370)
           OS=Arabidopsis thaliana GN=At1g55370 PE=2 SV=1
          Length = 308

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 27/86 (31%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
 Frame = +1

Query: 1   ITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHIS 180
           ITSY  R+WHG   E+L+T V +               ++  + GG++ +   S    IS
Sbjct: 104 ITSYKVRVWHGGKVELLHTWVEQEE-------------EEVVIRGGVSSAFRSSDSDEIS 150

Query: 181 LCNNNWSVQSVAVDPKEHVQ-GLRRS 255
               +W +Q ++ D K+ VQ  LRRS
Sbjct: 151 ----DWRLQGISGDSKDCVQMELRRS 172


>tr|A7PW58|A7PW58_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025482001
           PE=4 SV=1
          Length = 349

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +1

Query: 1   ITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHIS 180
           ITSY   +WHG   E+L+T V+E     +             + GG++ +L    D  IS
Sbjct: 96  ITSYKAPMWHGGTLEVLHTTVTEEDSGAV-------------IQGGVSLALECESDGGIS 142

Query: 181 LCNNNWSVQSVAVDPKEHVQ 240
              ++W +Q V  + +E +Q
Sbjct: 143 WSPSSWILQDVRGNAEELIQ 162


>tr|A5AUH5|A5AUH5_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_016184 PE=4 SV=1
          Length = 754

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 23/80 (28%), Positives = 38/80 (47%)
 Frame = +1

Query: 1   ITSYSCRLWHGSCEEMLYTDVSESSVNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHIS 180
           ITSY   +WHG   E+L+T V+E     +             + GG++ +L    D  IS
Sbjct: 466 ITSYKAPMWHGGTLEVLHTTVTEEDSGAV-------------IQGGVSLALECESDGGIS 512

Query: 181 LCNNNWSVQSVAVDPKEHVQ 240
              ++W +Q V  + +E +Q
Sbjct: 513 WSPSSWILQDVRGNAEELIQ 532



 Score = 36.2 bits (82), Expect = 1.8
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +1

Query: 274 GFENLVVSSPVTDGDKP----FISVAYSTVLSPITLDKGESWRGAQILLPD 414
           G+E++ +SSP +  +K     FI    +++L P+ ++ GE WR AQ++  D
Sbjct: 352 GYEDIYLSSPGSFSEKYGKDYFICTGPASILVPVVVNPGEGWRAAQVIEHD 402


>tr|A9SKF3|A9SKF3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_165403 PE=4 SV=1
          Length = 309

 Score = 37.7 bits (86), Expect = 0.60
 Identities = 23/61 (37%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
 Frame = +1

Query: 238 QGLRRSLLFENRGFENLVVSSP-----VTDGDKPFISVAYSTVLSPITLDKGESWRGAQI 402
           +G RR+  F N GFE + +S+P     + D D  F+ +  S    P+ L  GE WR AQ 
Sbjct: 245 RGKRRTSNFCNSGFEEIQLSNPGEESGLEDWDS-FVCIELSRSNRPVNLQPGEEWRAAQK 303

Query: 403 L 405
           L
Sbjct: 304 L 304


>tr|A3UWP9|A3UWP9_VIBSP Putative uncharacterized protein OS=Vibrio
            splendidus 12B01 GN=V12B01_24184 PE=4 SV=1
          Length = 7629

 Score = 37.4 bits (85), Expect = 0.79
 Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
 Frame = +1

Query: 76   VNGIDRSVHGATPQQFFVTGGMAPSLAHSLDPHISLCNNNWSVQSVAVDPKEHVQGLRRS 255
            VN +D+S+ G   QQF  T G    L  +L+  +    N     SV+ D       + +S
Sbjct: 956  VNTLDQSISGE--QQFSFTEG---ELFITLEGEVRFEPNRDLDHSVSED-------IVKS 1003

Query: 256  LLFENRGFENLVVSSPVT----DGDKPFISVAYSTVLSPITLDKGESWRGAQI 402
            ++  +  F+N  V+S +T    DGD P I V  S  LS I L  G +  G+ +
Sbjct: 1004 IVVTSSDFDNDPVTSTITLTITDGDNPTIDVIPSVTLSEINLSDGSAPSGSAV 1056


>tr|A7PW57|A7PW57_VITVI Chromosome chr8 scaffold_34, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00025481001
           PE=4 SV=1
          Length = 355

 Score = 35.8 bits (81), Expect = 2.3
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 4/51 (7%)
 Frame = +1

Query: 274 GFENLVVSSPVTDGDKP----FISVAYSTVLSPITLDKGESWRGAQILLPD 414
           G+E++ +SSP +  +K     FI    +++L P+ ++ GE WR AQ++  D
Sbjct: 303 GYEDIYLSSPGSLSEKYGKDYFICTGPASILVPVVVNPGEGWRAAQVIEHD 353


>tr|Q94AQ8|Q94AQ8_ARATH Putative uncharacterized protein At1g64770
           (Putative uncharacterized protein) OS=Arabidopsis
           thaliana GN=At1g64770 PE=2 SV=1
          Length = 348

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
 Frame = +1

Query: 274 GFENLVVSSPVTDGDKP-----FISVAYSTVLSPITLDKGESWRGAQILLPD 414
           GFE + V SP +  DK      F+    +++L P+ +  GE+WRGA ++  D
Sbjct: 295 GFEEMYVGSPGSMWDKYGKQHYFVCTGPTSMLVPVDVASGETWRGAMVIEHD 346