DK957278 |
Clone id |
TST39A01NGRL0027_P05 |
Library |
TST39 |
Length |
778 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0027_P05. 5' end sequence. |
Accession |
DK957278 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1751Contig1 |
Sequence |
GGAAGAAAGAGGTTCTGCTGGGCTTGCACGAGAGTGCCGCCCACAATGGGCAGGTGCAGG CATGGGAGGCTGACATCAAGGCCTTTGAGACGCTCAAGGCAGACTACGAAGATGAGCTTC GCAGAGTCCGCTCCGAGGCCTACCAAGTCGCCACTATGTACGCAGTGTTCCAAGGCGTCA TCCTCACTGCCATCTCCCAGAGAACACTGCTAACCTGCTCACTCTCCTGGAGCCCCGCCT CCATCTCTATCTCCGCCTCCGTCGCCGCATTCCTAGTCATCGCCGACAAACTCAAGAGCA TTGGCGAGGTGGAGGAGGACATTAGAACAACCGGCTTGAGCATGTCCGCCCTCCAGGGCT GCCTCGACAAGGTCGACGAGGAGGGCTGTGAGCTCGACCTTGACACTTTTCTTCCTGAGG TGGAGTACCAAAGGTTCGAGTGCGCTGGCTACCGCTTCATCCTGTCCCGCGACGGCCTGT GTGCTTTGCTTTTTCTCGCCATCTTTTCCTTCGTTGTCTCTTGCTTTTCCATCATCACCC TCTGCAAGCATTGCTCTCGCTGTAACTAAAAACGTACGCAGGGGGCTGGATCATCATAAG ATCAAAATATGACTCCTGTATGCCTGTCACCATTCAACCATCGTGACCATCATCCTCATC ATCAGTCCTCGCATTGTCATCCAAAGGTGAGACTTCAGCATTGCTGCAGCTCTCTTTCCC ACCTTTCTCAAATGACATCCCTTTGCTCCCCAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0C2N8 |
Definition |
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa |
Align length |
37 |
Score (bit) |
34.3 |
E-value |
0.75 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957278|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_P05, 5' (751 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurosp... 34 0.75 sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=... 32 2.8 sp|P09620|KEX1_YEAST Carboxypeptidase KEX1 OS=Saccharomyces cere... 26 3.0 sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesteras... 32 4.9 sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesteras... 32 4.9 sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4... 31 6.4 sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1 ... 31 8.3 sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1... 31 8.3 sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vt... 31 8.3
>sp|P0C2N8|DRS1_NEUCR ATP-dependent RNA helicase drs-1 OS=Neurospora crassa GN=drs-1 PE=3 SV=1 Length = 829
Score = 34.3 bits (77), Expect = 0.75 Identities = 17/37 (45%), Positives = 25/37 (67%), Gaps = 2/37 (5%) Frame = -3
Query: 539 GDDGKARDNEGKDGEKK--QSTQAVAGQDEAVASALE 435 G DG+ D+EG+DGEKK + A D++VA+A+E Sbjct: 216 GVDGEDEDSEGEDGEKKGEDEDEGDASDDDSVATAVE 252
>sp|Q4IBN1|VTS1_GIBZE Protein VTS1 OS=Gibberella zeae GN=VTS1 PE=3 SV=1 Length = 617
Score = 32.3 bits (72), Expect = 2.8 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 15/63 (23%) Frame = +3
Query: 30 ESAAHNGQVQAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYA 164 ES + + Q W ADI +ET L D++DEL RV SEA + A +YA Sbjct: 74 ESDSQDKIAQQWIADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYA 133
Query: 165 VFQ 173 + Q Sbjct: 134 LLQ 136
>sp|P09620|KEX1_YEAST Carboxypeptidase KEX1 OS=Saccharomyces cerevisiae GN=KEX1 PE=1 SV=1 Length = 729
Score = 26.2 bits (56), Expect(2) = 3.0 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -2
Query: 720 GKESCSNAEVSPLDDNARTDDEDDGHD 640 GKE N + DDN DD++D H+ Sbjct: 537 GKEKEGNKDKDGDDDNDNDDDDEDDHN 563
Score = 24.3 bits (51), Expect(2) = 3.0 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -3
Query: 545 AEGDDGKARDNEGKDGEKKQSTQAV 471 +EGDD D++ D +KQS Q + Sbjct: 564 SEGDDDDDDDDDEDDNNEKQSNQGL 588
>sp|Q298P4|PDE6_DROPS cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila pseudoobscura pseudoobscura GN=Pde6 PE=3 SV=2 Length = 1267
Score = 31.6 bits (70), Expect = 4.9 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1
Query: 19 WACTRVPP-TMGRCRHGRLTSRPLRRSRQTTKMSFAESAPRPT---KSPLCTQCSKASSS 186 W R PP + R + + +PL+R T+ + + PT KSP S ASS+ Sbjct: 197 WLTERAPPEALSRLQEFIESRKPLKRPSVTSDLFQQWMSASPTVQQKSPRSLSNSSASST 256
Query: 187 LPSPREH 207 LP R H Sbjct: 257 LPECRRH 263
>sp|B4G4E5|PDE6_DROPE cGMP-specific 3',5'-cyclic phosphodiesterase OS=Drosophila persimilis GN=Pde6 PE=3 SV=1 Length = 1276
Score = 31.6 bits (70), Expect = 4.9 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%) Frame = +1
Query: 19 WACTRVPP-TMGRCRHGRLTSRPLRRSRQTTKMSFAESAPRPT---KSPLCTQCSKASSS 186 W R PP + R + + +PL+R T+ + + PT KSP S ASS+ Sbjct: 202 WLTERAPPEALSRLQEFIESRKPLKRPSVTSDLFQQWMSASPTVQQKSPRSLSNSSASST 261
Query: 187 LPSPREH 207 LP R H Sbjct: 262 LPECRRH 268
>sp|Q01295|BRC1_DROME Broad-complex core protein isoforms 1/2/3/4/5 OS=Drosophila melanogaster GN=br PE=1 SV=2 Length = 727
Score = 31.2 bits (69), Expect = 6.4 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1
Query: 136 RPTKSPLCTQCSKASSSLPSPREH 207 RPTK P+C C + SSL S R H Sbjct: 661 RPTKEPVCNICKRVYSSLNSLRNH 684
>sp|Q7RZQ3|VTS1_NEUCR Protein VTS1 OS=Neurospora crassa GN=vts-1 PE=3 SV=2 Length = 617
Score = 30.8 bits (68), Expect = 8.3 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 15/54 (27%) Frame = +3
Query: 57 QAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYAVFQ 173 Q W ADI +ET L D++DEL RV SEA + A +YA+ Q Sbjct: 82 QQWIADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYALLQ 135
>sp|Q5BGC4|VTS1_EMENI Protein vts1 OS=Emericella nidulans GN=vts1 PE=3 SV=1 Length = 611
Score = 30.8 bits (68), Expect = 8.3 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 15/54 (27%) Frame = +3
Query: 57 QAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYAVFQ 173 Q W ADI +ET L D++DEL RV SEA + A +YA+ Q Sbjct: 79 QQWLADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYALLQ 132
>sp|Q4WJS2|VTS1_ASPFU Protein vts1 OS=Aspergillus fumigatus GN=vts1 PE=3 SV=2 Length = 612
Score = 30.8 bits (68), Expect = 8.3 Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 15/54 (27%) Frame = +3
Query: 57 QAWEADIKAFET---------LKADYEDELR------RVRSEAYQVATMYAVFQ 173 Q W ADI +ET L D++DEL RV SEA + A +YA+ Q Sbjct: 79 QQWLADIDQYETTLEEMAAATLDQDFKDELSAIEQWFRVLSEAERTAALYALLQ 132
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SWI8 |
Definition |
tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
126 |
Score (bit) |
47.8 |
E-value |
0.0008 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957278|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0027_P05, 5' (751 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella paten... 48 8e-04 tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome ... 46 0.003 tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.015 tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020 tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.020 tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis... 43 0.025 tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella paten... 42 0.043 tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella paten... 41 0.074 tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.13 tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis... 40 0.17 tr|A9RJ86|A9RJ86_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.22 tr|A9ST72|A9ST72_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.63 tr|A9S4D0|A9S4D0_PHYPA Predicted protein OS=Physcomitrella paten... 38 0.63 tr|B4PFW3|B4PFW3_DROYA GE19634 OS=Drosophila yakuba GN=GE19634 P... 38 0.82 tr|A9TR62|A9TR62_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.1 tr|A9TUX5|A9TUX5_PHYPA Predicted protein OS=Physcomitrella paten... 37 1.4 tr|Q9VW54|Q9VW54_DROME Rpn1 OS=Drosophila melanogaster GN=Rpn1 P... 37 1.8 tr|A9RJ83|A9RJ83_PHYPA Predicted protein OS=Physcomitrella paten... 36 2.4 tr|B3NE05|B3NE05_DROER GG16067 OS=Drosophila erecta GN=GG16067 P... 36 2.4 tr|A7ENV1|A7ENV1_SCLS1 Putative uncharacterized protein OS=Scler... 35 5.3 tr|B3MRQ3|B3MRQ3_DROAN GF20955 OS=Drosophila ananassae GN=GF2095... 34 9.1
>tr|A9SWI8|A9SWI8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_234246 PE=4 SV=1 Length = 463
Score = 47.8 bits (112), Expect = 8e-04 Identities = 29/126 (23%), Positives = 54/126 (42%) Frame = +3
Query: 9 EVLLGLHESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILT 188 ++L + S H ++ WEA + + +++E YQ+ Y+VFQGV+LT Sbjct: 193 KILRWIESSTRHKKALEFWEAQDNLCTRRVDNKRKQSLALKNEVYQLIGFYSVFQGVLLT 252
Query: 189 AISQRTLLTCXXXXXXXXXXXXXXXXXXXXXXDKLKSIGEVEEDIRTTGLSMSALQGCLD 368 A+SQ LL C K ++ E+E+ I + +S ++ Sbjct: 253 AVSQSNLLHCNNWGFPFSLSLLASCSAIVGVYLKFAAVWELEKTIESEKMSRQLYVNRIE 312
Query: 369 KVDEEG 386 ++ +G Sbjct: 313 RLRSKG 318
>tr|A7P5L3|A7P5L3_VITVI Chromosome chr4 scaffold_6, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00032577001 PE=4 SV=1 Length = 328
Score = 45.8 bits (107), Expect = 0.003 Identities = 22/63 (34%), Positives = 36/63 (57%) Frame = +3
Query: 30 ESAAHNGQVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL 209 +SA Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R Sbjct: 22 QSAMDENQIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMS 81
Query: 210 LTC 218 L C Sbjct: 82 LAC 84
>tr|A9TZ76|A9TZ76_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172806 PE=4 SV=1 Length = 689
Score = 43.5 bits (101), Expect = 0.015 Identities = 21/52 (40%), Positives = 28/52 (53%) Frame = +3
Query: 63 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 218 WE + + E VR+E YQV Y VFQGVI TA++Q ++L C Sbjct: 149 WEESFGLHQKRREYKESRRDAVRNEIYQVIGFYVVFQGVIFTAVAQASMLRC 200
>tr|A9SQW3|A9SQW3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_233790 PE=4 SV=1 Length = 220
Score = 43.1 bits (100), Expect = 0.020 Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 5/57 (8%) Frame = +3
Query: 63 WEADIKAFETLKADYEDELRRVRS-----EAYQVATMYAVFQGVILTAISQRTLLTC 218 WE + K KA Y E++R RS E YQ+ Y+VFQGV+L A++Q + LTC Sbjct: 36 WENNFK-----KALYRVEVKRERSLNVKNEVYQLIGFYSVFQGVVLGAVAQASTLTC 87
>tr|A9S980|A9S980_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163566 PE=4 SV=1 Length = 233
Score = 43.1 bits (100), Expect = 0.020 Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 1/70 (1%) Frame = +3
Query: 12 VLLGLHESAAHNGQVQAWEADIKAFETLKADYE-DELRRVRSEAYQVATMYAVFQGVILT 188 +L + S H +Q WE A T + D + + ++E YQ+ Y+VFQGV+LT Sbjct: 38 ILHWIENSERHKKALQFWETQ-DALCTRRVDSKRKQSAAAKNEVYQLIGFYSVFQGVLLT 96
Query: 189 AISQRTLLTC 218 A++Q +L C Sbjct: 97 AVAQSNMLHC 106
>tr|A5BAG3|A5BAG3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_032202 PE=4 SV=1 Length = 216
Score = 42.7 bits (99), Expect = 0.025 Identities = 20/56 (35%), Positives = 33/56 (58%) Frame = +3
Query: 51 QVQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 218 Q++ E ++ ++ E ++ ++S +++A Y VFQGVILTAIS R L C Sbjct: 5 QIKEQEKKVEEMRSIVEKQEKRIQSLQSNTFKLANFYFVFQGVILTAISGRMSLAC 60
>tr|A9T8M2|A9T8M2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_89523 PE=4 SV=1 Length = 257
Score = 42.0 bits (97), Expect = 0.043 Identities = 18/55 (32%), Positives = 34/55 (61%) Frame = +3
Query: 54 VQAWEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 218 +Q WE+ ++ + + + V++E Y + ++VFQGV+LT +SQ +LL+C Sbjct: 81 LQEWESKLRDSQDIILRKQTLSLNVKNEIYHLIGFFSVFQGVVLTTVSQASLLSC 135
>tr|A9TZ84|A9TZ84_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172807 PE=4 SV=1 Length = 629
Score = 41.2 bits (95), Expect = 0.074 Identities = 20/52 (38%), Positives = 28/52 (53%) Frame = +3
Query: 63 WEADIKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTLLTC 218 WE E + E + + +E YQV Y VFQGVI TA++Q ++L C Sbjct: 147 WEETFNLCEKRRKYKEAQRDAIWNEIYQVIGFYVVFQGVIFTAVAQASMLRC 198
>tr|A9RJ85|A9RJ85_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_66853 PE=4 SV=1 Length = 414
Score = 40.4 bits (93), Expect = 0.13 Identities = 22/70 (31%), Positives = 34/70 (48%) Frame = +3
Query: 132 SEAYQVATMYAVFQGVILTAISQRTLLTCXXXXXXXXXXXXXXXXXXXXXXDKLKSIGEV 311 +E YQ+ ++VFQGV+LTA++Q LLTC K K I E+ Sbjct: 116 NEIYQLVGFFSVFQGVLLTAVAQSNLLTCHNWWTAFFLSLLASLVTICGVIQKFKFIIEL 175
Query: 312 EEDIRTTGLS 341 + ++ + LS Sbjct: 176 DNNMNSEDLS 185
>tr|A5C132|A5C132_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025154 PE=4 SV=1 Length = 198
Score = 40.0 bits (92), Expect = 0.17 Identities = 17/51 (33%), Positives = 35/51 (68%), Gaps = 3/51 (5%) Frame = +3
Query: 75 IKAFETLKADYEDELRRVRSEAYQVATMYAVFQGVILTAISQRTL---LTC 218 ++ ++ E+ ++ ++SEA+++A Y +FQGVILTA+S+ ++ +TC Sbjct: 10 VEEMRSIVEKQEERIQNLQSEAFELANFYFLFQGVILTAVSRASISHPITC 60
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