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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957314
Clone id TST39A01NGRL0028_A17
Library
Length 628
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_A17. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
ATTATTTCTGTCTAACCAGAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCACGACTTTGATCTGTGCACAGAAGCCCTATTTCTCTCTCCCTCTCCCACACACAGACA
CTCCACACACGATCTGTCGTAGTATGGCCAGCGCCATGGCTTCCTCGCGCTCCTCTGCTG
CATTTTCATCCCACTTACCCTCCCCCCGTAAGCTGACCTCTTCCCAGATGCAGAGCATTT
CCCTGAGGCCGCATCCCCCAACCCACATCAGCAAACCCAGGAGCATCTCTCTCAGGACGC
GCTGTGCACAGGCTCACACCACCCCTTTCTCCTCCTCTTCTAATTCCTCTCCGTCTTCCT
CCTCCTCTGCTGATCAGCACGTGCAGCAGGCGTCTCCTCACCCAGCCCGCACCAGCAGAG
CAGGGGCAGCGCCTATGCAAGAAATGTTCGTGTACGAGCTCAATGAAAAGGATCGCAACA
GCCCTGCCTACCTGCCTTTCAGCCTCAAGTTCGATATTGGCAAGGGCCTGCCTTCTGGAG
CTTTAGGTGATTTGGTCCCCTTCACCAACAAGCTTTATGATGGAACCTTGCAAACCAGGC
TGGGAATCACGGCCGGCATGTGCATATT
■■Homology search results ■■ -
sp_hit_id Q9LS01
Definition sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Arabidopsis thaliana
Align length 73
Score (bit) 74.3
E-value 5.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957314|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_A17, 5'
         (628 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic OS=Ar...    74   5e-13
sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic OS=Ar...    70   7e-12
sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic OS=Ar...    69   2e-11
sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic OS=Ar...    68   3e-11
sp|Q7ZVR1|WDR75_DANRE WD repeat-containing protein 75 OS=Danio r...    30   7.8  
sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xeno...    30   7.8  

>sp|Q9LS01|AOC3_ARATH Allene oxide cyclase 3, chloroplastic
           OS=Arabidopsis thaliana GN=AOC3 PE=2 SV=1
          Length = 258

 Score = 74.3 bits (181), Expect = 5e-13
 Identities = 39/73 (53%), Positives = 49/73 (67%)
 Frame = +3

Query: 408 RTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNKLYDGT 587
           +T  +  + +QE+ VYELNE DRNSPA L       +GK      LGDLVPFTNKLY G 
Sbjct: 76  KTENSRPSKIQELNVYELNEGDRNSPAVLK------LGKKPTELCLGDLVPFTNKLYTGD 129

Query: 588 LQTRLGITAGMCI 626
           L+ R+GITAG+C+
Sbjct: 130 LKKRVGITAGLCV 142


>sp|Q93ZC5|AOC4_ARATH Allene oxide cyclase 4, chloroplastic
           OS=Arabidopsis thaliana GN=AOC4 PE=2 SV=1
          Length = 254

 Score = 70.5 bits (171), Expect = 7e-12
 Identities = 37/64 (57%), Positives = 43/64 (67%)
 Frame = +3

Query: 435 MQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNKLYDGTLQTRLGITA 614
           +QE+ VYE NE DRNSPA L       +GK      LGDLVPFTNKLY G L  R+GITA
Sbjct: 81  IQELNVYEFNEGDRNSPAVLK------LGKKPDQLCLGDLVPFTNKLYTGDLTKRIGITA 134

Query: 615 GMCI 626
           G+C+
Sbjct: 135 GLCV 138


>sp|Q9LS03|AOC1_ARATH Allene oxide cyclase 1, chloroplastic
           OS=Arabidopsis thaliana GN=AOC1 PE=1 SV=1
          Length = 254

 Score = 69.3 bits (168), Expect = 2e-11
 Identities = 36/78 (46%), Positives = 48/78 (61%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           S +   T     + +QE+ VYE+N+ DR+SP  L  +  F  G       LGDLVPFTNK
Sbjct: 68  SQNLGNTENPRPSKVQELSVYEINDLDRHSPKILKNAFSFRFG-------LGDLVPFTNK 120

Query: 573 LYDGTLQTRLGITAGMCI 626
           LY G L+ R+GITAG+C+
Sbjct: 121 LYTGDLKKRVGITAGLCV 138


>sp|Q9LS02|AOC2_ARATH Allene oxide cyclase 2, chloroplastic
           OS=Arabidopsis thaliana GN=AOC2 PE=1 SV=1
          Length = 253

 Score = 68.2 bits (165), Expect = 3e-11
 Identities = 37/66 (56%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
 Frame = +3

Query: 435 MQEMFVYELNEKDRNSPAYLP--FSLKFDIGKGLPSGALGDLVPFTNKLYDGTLQTRLGI 608
           +QE+ VYE+NE DR+SP  L   FSL F          LGDLVPFTNKLY G L+ R+GI
Sbjct: 81  VQELSVYEINELDRHSPKILKNAFSLMF---------GLGDLVPFTNKLYTGDLKKRVGI 131

Query: 609 TAGMCI 626
           TAG+C+
Sbjct: 132 TAGLCV 137


>sp|Q7ZVR1|WDR75_DANRE WD repeat-containing protein 75 OS=Danio
           rerio GN=wdr75 PE=2 SV=2
          Length = 832

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 23/73 (31%), Positives = 29/73 (39%)
 Frame = +1

Query: 403 QPAPAEQGQRLCKKCSCTSSMKRIATALPTCLSASSSILARACLLEL*VIWSPSPTSFMM 582
           Q A A+Q Q     C    S   +      C SA  SILA     E+  +WSP     + 
Sbjct: 475 QTADAQQAQNYWS-CDFVGSYHNLKPK-NCCFSADGSILA-VSFQEVLTLWSPETWELLT 531

Query: 583 EPCKPGWESRPAC 621
             C+P  E R  C
Sbjct: 532 TLCQPPGEIRDLC 544


>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus
           laevis GN=march2 PE=2 SV=1
          Length = 246

 Score = 30.4 bits (67), Expect = 7.8
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = +1

Query: 424 GQRLCKKCSCTSSMKRI-ATALPTCLSASSSILARACLLEL*VIWSPSPTSFMMEPCKPG 600
           G+RL   C CT ++  +  T L   LS+S++     C  E  V   P P +  ++   P 
Sbjct: 73  GERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRPRPVTEWLKDPGPR 132

Query: 601 WESR 612
            E R
Sbjct: 133 HEKR 136
tr_hit_id Q8L6H4
Definition tr|Q8L6H4|Q8L6H4_ORYSA Allene oxide cyclase OS=Oryza sativa
Align length 78
Score (bit) 89.0
E-value 2.0e-16
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957314|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_A17, 5'
         (628 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8L6H4|Q8L6H4_ORYSA Allene oxide cyclase OS=Oryza sativa GN=a...    89   2e-16
tr|Q75KD7|Q75KD7_ORYSJ Os03g0438100 protein OS=Oryza sativa subs...    89   2e-16
tr|A2XID3|A2XID3_ORYSI Putative uncharacterized protein OS=Oryza...    89   2e-16
tr|Q8GS38|Q8GS38_PHYPA Allene oxide cyclase OS=Physcomitrella pa...    89   3e-16
tr|A9TYY2|A9TYY2_PHYPA Predicted protein OS=Physcomitrella paten...    89   3e-16
tr|A3AJG2|A3AJG2_ORYSJ Putative uncharacterized protein OS=Oryza...    87   6e-16
tr|B6TQ59|B6TQ59_MAIZE Allene oxide cyclase 4 OS=Zea mays PE=2 SV=1    86   2e-15
tr|B4FUX0|B4FUX0_MAIZE Putative uncharacterized protein OS=Zea m...    86   2e-15
tr|Q6RW09|Q6RW09_MAIZE Allene oxide cyclase (Putative uncharacte...    86   2e-15
tr|B6T737|B6T737_MAIZE Allene oxide cyclase 4 OS=Zea mays PE=2 SV=1    86   2e-15
tr|Q711R0|Q711R0_HORVU Allene oxide cyclase OS=Hordeum vulgare G...    82   3e-14
tr|A7P340|A7P340_VITVI Chromosome chr1 scaffold_5, whole genome ...    82   3e-14
tr|Q8H0N6|Q8H0N6_PHYPA Allene oxide cyclase OS=Physcomitrella pa...    81   4e-14
tr|A9RB27|A9RB27_PHYPA Predicted protein OS=Physcomitrella paten...    81   4e-14
tr|Q711Q9|Q711Q9_MEDTR Putative uncharacterized protein OS=Medic...    79   3e-13
tr|Q68IP6|Q68IP6_HUMLU Allene oxide cyclase C4 OS=Humulus lupulu...    78   4e-13
tr|Q2PP43|Q2PP43_IPONI Chloroplast allene oxide cyclase OS=Ipomo...    77   8e-13
tr|Q3LI84|Q3LI84_PEA Allene oxide cyclase OS=Pisum sativum GN=ao...    76   2e-12
tr|A9NKK4|A9NKK4_PICSI Putative uncharacterized protein OS=Picea...    76   2e-12
tr|Q599T8|Q599T8_MEDTR Allene-oxide cyclase OS=Medicago truncatu...    75   2e-12
tr|A9PK60|A9PK60_POPJC Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A9PEG0|A9PEG0_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|A9PCM3|A9PCM3_POPTR Putative uncharacterized protein OS=Popul...    75   2e-12
tr|Q0WP37|Q0WP37_ARATH Putative uncharacterized protein At3g2578...    74   5e-12
tr|Q711R1|Q711R1_TOBAC Allene oxide cyclase OS=Nicotiana tabacum...    74   7e-12
tr|Q9AYT8|Q9AYT8_9ROSI Mangrin OS=Bruguiera sexangula GN=mang-1 ...    74   9e-12
tr|B2ZFD7|B2ZFD7_PETHY AOC OS=Petunia hybrida PE=2 SV=1                74   9e-12
tr|Q68IP7|Q68IP7_HUMLU Allene oxide cyclase C1 OS=Humulus lupulu...    73   1e-11
tr|A9UKW1|A9UKW1_CAMAC Allene oxide cyclase OS=Camptotheca acumi...    73   1e-11
tr|Q8H1X5|Q8H1X5_SOLTU Allene oxide cyclase OS=Solanum tuberosum...    72   4e-11

>tr|Q8L6H4|Q8L6H4_ORYSA Allene oxide cyclase OS=Oryza sativa GN=aoc
           PE=2 SV=1
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A  A +QEMFVYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 54  SPKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNK 107

Query: 573 LYDGTLQTRLGITAGMCI 626
           LY G+L  RLGI+AG+CI
Sbjct: 108 LYSGSLDKRLGISAGICI 125


>tr|Q75KD7|Q75KD7_ORYSJ Os03g0438100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0054H04.12 PE=2 SV=1
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A  A +QEMFVYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 54  SPKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNK 107

Query: 573 LYDGTLQTRLGITAGMCI 626
           LY G+L  RLGI+AG+CI
Sbjct: 108 LYSGSLDKRLGISAGICI 125


>tr|A2XID3|A2XID3_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_12194 PE=4 SV=1
          Length = 240

 Score = 89.0 bits (219), Expect = 2e-16
 Identities = 47/78 (60%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A  A +QEMFVYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 54  SPKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNK 107

Query: 573 LYDGTLQTRLGITAGMCI 626
           LY G+L  RLGI+AG+CI
Sbjct: 108 LYSGSLDKRLGISAGICI 125


>tr|Q8GS38|Q8GS38_PHYPA Allene oxide cyclase OS=Physcomitrella
           patens GN=aoc PE=2 SV=1
          Length = 189

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
 Frame = +3

Query: 423 GAAP--MQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNKLYDGTLQT 596
           GA+P  +QE+FVYE+NE+DR SP +LPF  K   G      +LGDLVPF+NK+YDG+L+T
Sbjct: 5   GASPGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKT 64

Query: 597 RLGITAGMC 623
           RLGITAG+C
Sbjct: 65  RLGITAGLC 73


>tr|A9TYY2|A9TYY2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_226795 PE=4 SV=1
          Length = 189

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 42/69 (60%), Positives = 54/69 (78%), Gaps = 2/69 (2%)
 Frame = +3

Query: 423 GAAP--MQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNKLYDGTLQT 596
           GA+P  +QE+FVYE+NE+DR SP +LPF  K   G      +LGDLVPF+NK+YDG+L+T
Sbjct: 5   GASPGHVQELFVYEINERDRGSPVFLPFGGKKQPGTDAHVNSLGDLVPFSNKIYDGSLKT 64

Query: 597 RLGITAGMC 623
           RLGITAG+C
Sbjct: 65  RLGITAGLC 73


>tr|A3AJG2|A3AJG2_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_010934 PE=4 SV=1
          Length = 241

 Score = 87.4 bits (215), Expect = 6e-16
 Identities = 46/77 (59%), Positives = 52/77 (67%)
 Frame = +3

Query: 396 PHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNKL 575
           P PA    A  A +QEMFVYE+NE+DR SPAYL  S K          ALGDLVPFTNKL
Sbjct: 56  PKPATPKDARPAKVQEMFVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNKL 109

Query: 576 YDGTLQTRLGITAGMCI 626
           Y G+L  RLGI+AG+CI
Sbjct: 110 YSGSLDKRLGISAGICI 126


>tr|B6TQ59|B6TQ59_MAIZE Allene oxide cyclase 4 OS=Zea mays PE=2 SV=1
          Length = 238

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 43/78 (55%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A    +QE++VYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 52  SPKPAAAKDARPTKVQELYVYEMNERDRESPAYLRLSAK------QTENALGDLVPFTNK 105

Query: 573 LYDGTLQTRLGITAGMCI 626
           +Y+G+L  RLGITAG+C+
Sbjct: 106 VYNGSLDKRLGITAGICV 123


>tr|B4FUX0|B4FUX0_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 238

 Score = 85.9 bits (211), Expect = 2e-15
 Identities = 43/78 (55%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A    +QE++VYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 52  SPKPAAAKDARPTKVQELYVYEMNERDRESPAYLRLSAK------QTENALGDLVPFTNK 105

Query: 573 LYDGTLQTRLGITAGMCI 626
           +Y+G+L  RLGITAG+C+
Sbjct: 106 VYNGSLDKRLGITAGICV 123


>tr|Q6RW09|Q6RW09_MAIZE Allene oxide cyclase (Putative
           uncharacterized protein) OS=Zea mays GN=aoc PE=2 SV=1
          Length = 238

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 42/78 (53%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A    +QE++VYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 52  SPKPAAAKDARPTKVQELYVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNK 105

Query: 573 LYDGTLQTRLGITAGMCI 626
           +Y+G+L  RLG+TAG+C+
Sbjct: 106 VYNGSLDKRLGVTAGICV 123


>tr|B6T737|B6T737_MAIZE Allene oxide cyclase 4 OS=Zea mays PE=2 SV=1
          Length = 240

 Score = 85.5 bits (210), Expect = 2e-15
 Identities = 42/78 (53%), Positives = 53/78 (67%)
 Frame = +3

Query: 393 SPHPARTSRAGAAPMQEMFVYELNEKDRNSPAYLPFSLKFDIGKGLPSGALGDLVPFTNK 572
           SP PA    A    +QE++VYE+NE+DR SPAYL  S K          ALGDLVPFTNK
Sbjct: 52  SPKPAAAKDARPTKVQELYVYEINERDRESPAYLRLSAK------QTENALGDLVPFTNK 105

Query: 573 LYDGTLQTRLGITAGMCI 626
           +Y+G+L  RLG+TAG+C+
Sbjct: 106 VYNGSLDKRLGVTAGICV 123