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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957327
Clone id TST39A01NGRL0028_B06
Library
Length 615
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_B06. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CGAAGATTCGTCTCCACCTCCACACAGAGAATTTCTCTGTGCGCTTCCATTAGTTGCACA
GGTTGCTGAAGATGCGAATGGAGTAGTCATAGTGAAAGGTTGGTGTCGTGTAAGGAGCGT
GTTGGAGTTCTTTGATCAGCAACCTTAAACATTTGAGTCAGATGGCAACCAATGTTGTTC
AGGAAGGTTCATTTTCTAAGGCCACTTGGAGTGTATCATCTGCACATCATCAACAAGCTA
CTCTCGCAACATGCAGTTTAACAGAACCTGGACTGCTTGACGAAACAATTGAAGTTGTCA
AAGAAAAAGTATGGAGCTTCCGAAATGCCTGGAAAGGTTTTGCAGACGTTTTCTCGAAGG
TTGGTGTGAGTCCCACTGTCTTTGGATATTCATCAGTTCCCCTCCATGAGGATGACTATG
TCAAAGAGCATAGTGAAGATGTCCTAGCTTTGGCAAAAGTTGATGCAGAGGACGACAAGC
CTTCATCAAAGCGGCCTACCCTTCTTCTGATAGATGGAACTGTTTTGGAAGAGGACAACT
TGCTTAATGAGGAGGGTGATCTTGATGAGGATGTTGATCATGCCTTTGCAGAGTCGTCAA
GGAAGGAATTTGTTG
■■Homology search results ■■ -
sp_hit_id Q10161
Definition sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe
Align length 50
Score (bit) 33.5
E-value 0.89
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957327|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_B06, 5'
         (615 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosacch...    33   0.89 
sp|Q9AV49|HOX9_ORYSJ Homeobox-leucine zipper protein HOX9 OS=Ory...    32   3.4  
sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Ory...    32   3.4  
sp|Q5WTA1|MIAA_LEGPL tRNA delta(2)-isopentenylpyrophosphate tran...    30   7.6  
sp|Q5ZS23|MIAA_LEGPH tRNA delta(2)-isopentenylpyrophosphate tran...    30   7.6  
sp|A5IAM8|MIAA_LEGPC tRNA delta(2)-isopentenylpyrophosphate tran...    30   7.6  
sp|Q5X1J2|MIAA_LEGPA tRNA delta(2)-isopentenylpyrophosphate tran...    30   7.6  
sp|Q3AFL7|RL25_CARHZ 50S ribosomal protein L25 OS=Carboxydotherm...    30   9.8  

>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain
           OS=Schizosaccharomyces pombe GN=chc1 PE=1 SV=1
          Length = 1666

 Score = 33.5 bits (75), Expect = 0.89
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = +3

Query: 354 SKVGVSPTVFGYSSVPLHEDDY--VKEHSEDVLALAKVDAEDDKPSSKRP 497
           + VG+ P+ FG+++V L  D Y  V+++   V  +  VD ED     +RP
Sbjct: 16  ASVGIQPSSFGFANVTLESDKYVCVRDNPNGVNQVVIVDLEDPSNVLRRP 65


>sp|Q9AV49|HOX9_ORYSJ Homeobox-leucine zipper protein HOX9 OS=Oryza
           sativa subsp. japonica GN=HOX9 PE=2 SV=1
          Length = 840

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 384 GYSSVPLHEDDYVKEHSEDVLALAKVDAEDDKPSSKRPTLLLID 515
           GY    +    YV+   E V AL +V AE  KPSS R   LL D
Sbjct: 19  GYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRD 62


>sp|A2Z8L4|HOX9_ORYSI Homeobox-leucine zipper protein HOX9 OS=Oryza
           sativa subsp. indica GN=HOX9 PE=2 SV=2
          Length = 840

 Score = 31.6 bits (70), Expect = 3.4
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = +3

Query: 384 GYSSVPLHEDDYVKEHSEDVLALAKVDAEDDKPSSKRPTLLLID 515
           GY    +    YV+   E V AL +V AE  KPSS R   LL D
Sbjct: 19  GYDKAGMDSGKYVRYTPEQVEALERVYAECPKPSSSRRQQLLRD 62


>sp|Q5WTA1|MIAA_LEGPL tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Legionella pneumophila (strain Lens)
           GN=miaA PE=3 SV=1
          Length = 313

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 258 NCMLRE*LVDDVQMIHSKWP*KMNLP 181
           + ML E  +++VQ + +KWP ++NLP
Sbjct: 212 DAMLSEGFIEEVQQLQAKWPIQINLP 237


>sp|Q5ZS23|MIAA_LEGPH tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Legionella pneumophila subsp. pneumophila
           (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=miaA
           PE=3 SV=2
          Length = 313

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 258 NCMLRE*LVDDVQMIHSKWP*KMNLP 181
           + ML E  +++VQ + +KWP ++NLP
Sbjct: 212 DAMLSEGFIEEVQQLQAKWPIQINLP 237


>sp|A5IAM8|MIAA_LEGPC tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Legionella pneumophila (strain Corby)
           GN=miaA PE=3 SV=1
          Length = 313

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 258 NCMLRE*LVDDVQMIHSKWP*KMNLP 181
           + ML E  +++VQ + +KWP ++NLP
Sbjct: 212 DAMLSEGFIEEVQQLQAKWPIQINLP 237


>sp|Q5X1J2|MIAA_LEGPA tRNA delta(2)-isopentenylpyrophosphate
           transferase OS=Legionella pneumophila (strain Paris)
           GN=miaA PE=3 SV=1
          Length = 313

 Score = 30.4 bits (67), Expect = 7.6
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -1

Query: 258 NCMLRE*LVDDVQMIHSKWP*KMNLP 181
           + ML E  +++VQ + +KWP ++NLP
Sbjct: 212 DAMLSEGFIEEVQQLQAKWPIQINLP 237


>sp|Q3AFL7|RL25_CARHZ 50S ribosomal protein L25 OS=Carboxydothermus
           hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplY PE=3
           SV=1
          Length = 197

 Score = 30.0 bits (66), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 154 KCLRLLIKELQHAPYTTPTFHYDYSI 77
           K  R+L+KELQH P T    H D+ +
Sbjct: 65  KTQRVLVKELQHHPVTGKLIHVDFQV 90
tr_hit_id Q1NLL4
Definition tr|Q1NLL4|Q1NLL4_9DELT TPR repeat OS=delta proteobacterium MLMS-1
Align length 55
Score (bit) 35.0
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957327|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_B06, 5'
         (615 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q1NLL4|Q1NLL4_9DELT TPR repeat OS=delta proteobacterium MLMS-...    35   3.5  
tr|B0MDX2|B0MDX2_9FIRM Putative uncharacterized protein OS=Anaer...    34   5.9  
tr|A7TNP8|A7TNP8_VANPO Putative uncharacterized protein OS=Vande...    34   5.9  
tr|A7N4P9|A7N4P9_VIBHB Putative uncharacterized protein OS=Vibri...    34   7.7  

>tr|Q1NLL4|Q1NLL4_9DELT TPR repeat OS=delta proteobacterium MLMS-1
           GN=MldDRAFT_2900 PE=4 SV=1
          Length = 190

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +3

Query: 315 SFRNAWKGFADVFSKVGVSPTVFGYSSVPLHEDDYVK--EHSEDVLALAKVDAED 473
           +F NA KGF +   + G++  V   + V L ++DY K  EH E  +A+ +   +D
Sbjct: 39  AFHNALKGFEEENDETGIARAVSRLAEVCLEKEDYAKAREHLERAMAICRAAKDD 93


>tr|B0MDX2|B0MDX2_9FIRM Putative uncharacterized protein
           OS=Anaerostipes caccae DSM 14662 GN=ANACAC_01765 PE=4
           SV=1
          Length = 272

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 1/82 (1%)
 Frame = +3

Query: 147 KHLSQMATNVVQEGSFSKATWSVSSAHHQQATLATCSLTEPGLLDETIEVVKEKVWSFRN 326
           K+L+Q  T        S+       + HQ          +  +LDET E  KE+ W   N
Sbjct: 153 KYLNQGCTEAEARKKASRWVALPGRSEHQTGLAVDIVAVDYPVLDETQEKRKEQQWLMEN 212

Query: 327 AWK-GFADVFSKVGVSPTVFGY 389
           +WK GF   + K   + T  GY
Sbjct: 213 SWKYGFILRYPKNKTNITKIGY 234


>tr|A7TNP8|A7TNP8_VANPO Putative uncharacterized protein
           OS=Vanderwaltozyma polyspora (strain ATCC 22028 / DSM
           70294) GN=Kpol_1001p11 PE=4 SV=1
          Length = 920

 Score = 34.3 bits (77), Expect = 5.9
 Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 8/73 (10%)
 Frame = +3

Query: 279 DETIEVVKEKVWSFRN-------AWKGFADVFSKVGVSPTVFGYSSVPLHE-DDYVKEHS 434
           D+ IE+   KV S            K  A++  +  +S   +GY  +PL E DD+  E+ 
Sbjct: 689 DDAIEIAARKVASVSGDARRALKICKRAAEIAEQYYMSRHGYGYDGLPLEEIDDFDMEND 748

Query: 435 EDVLALAKVDAED 473
           EDV+AL K  A +
Sbjct: 749 EDVIALRKERANN 761


>tr|A7N4P9|A7N4P9_VIBHB Putative uncharacterized protein OS=Vibrio
           harveyi (strain ATCC BAA-1116 / BB120) GN=VIBHAR_05867
           PE=4 SV=1
          Length = 330

 Score = 33.9 bits (76), Expect = 7.7
 Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 5/109 (4%)
 Frame = +3

Query: 207 WSVSSAHHQQATLATCSLTEPGLLDETIEVVKEKVWSFRNA-WKGFADVFSKVGVSPTVF 383
           W +  AHH+ +        E G  DE   VV +++W F    W    +  S++   P   
Sbjct: 4   WDIE-AHHELSLKGRFQRDENG--DEVWVVVAKRIWQFDGVVWHELGE--SEIFDDPQYL 58

Query: 384 G---YSSVPL-HEDDYVKEHSEDVLALAKVDAEDDKPSSKRPTLLLIDG 518
           G   +S++ + HE  Y K+++ DVL   K  +   KP + +   +LIDG
Sbjct: 59  GEEGFSAMKVDHEFAYTKDNT-DVLVYGKARSYAKKPVTYQECRVLIDG 106