DK957351 |
Clone id |
TST39A01NGRL0028_C06 |
Library |
TST39 |
Length |
608 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_C06. 5' end sequence. |
Accession |
DK957351 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL19Contig1 |
Sequence |
GAGAAAGCATATCATGAGCAGTTGTCTGTTGCTGAAATTACTAATAGTGCCTTTGAGCCC TCCTCCATGATGGCCAAATGCAATCCAAGACATGGAAAGTATATGGCTTGCTGTCTGATG TACAGAGGAGATGTTGTTCCAAAGGATGTCAACGCGGCCGTTGCAACCATCAAGACCAAG AGAACAATCCAATTCGTGGACTGGTGCCCCACTGGTTTCAAGTGTGGTATCAACTATCAG CCCCCCACTGTTGTCCCAGGAGGGGACCTGGCTAAAGTGCAGAGAGCAATTTGCATGATT TCCAACTCGACCAGTGTAGCGGAAGTGTTCTCTCTAATTGATCTCAAGTTTGATCTCATG TATGCCAAGCGAGCATTTGTCCATTGGTATGTTGGTGAAGGTATGGAGGAGGGAGAATTC TCTGAAGCACGTGAAGACTTGGCCGCTCTTGAGAAGGATTATGATGAGGTGGGTGCAGAA GGTCAAGACGATGATGGTGGAGAAGATGAGTACTACGAAGGAGTATTGGGGAACTATTTT ATGCTATCCGAATGTTGGGATTGTTTTGCGTTGACAGTTGGTGATGTGTGCTTGCTTGTG TGTGTGTG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P33629 |
Definition |
sp|P33629|TBA_PRUDU Tubulin alpha chain OS=Prunus dulcis |
Align length |
154 |
Score (bit) |
312.0 |
E-value |
7.0e-85 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q5G279 |
Definition |
tr|Q5G279|Q5G279_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris richardii |
Align length |
154 |
Score (bit) |
313.0 |
E-value |
5.0e-84 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957351|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_C06, 5' (608 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q5G279|Q5G279_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris ... 313 5e-84 tr|Q5G277|Q5G277_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris ... 313 5e-84 tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE... 313 6e-84 tr|Q9M3T2|Q9M3T2_BETVE Alpha-tubulin OS=Betula verrucosa GN=atub... 312 8e-84 tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii G... 312 8e-84 tr|Q84TK6|Q84TK6_POPTM Alpha-tubulin 1 OS=Populus tremuloides PE... 312 8e-84 tr|Q5ME66|Q5ME66_PSEMZ Alpha tubulin 1 OS=Pseudotsuga menziesii ... 312 8e-84 tr|Q5G283|Q5G283_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris ... 312 8e-84 tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan PE=2 SV=1 312 8e-84 tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1 312 8e-84 tr|A9SEI4|A9SEI4_PHYPA Predicted protein OS=Physcomitrella paten... 312 8e-84 tr|A9QVH4|A9QVH4_9CONI Alpha tubulin OS=Picea wilsonii GN=TUA1 P... 312 8e-84 tr|A9PL19|A9PL19_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 312 8e-84 tr|A9PL18|A9PL18_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 312 8e-84 tr|A9PL15|A9PL15_GOSHI Alpha-tubulin OS=Gossypium hirsutum GN=TU... 312 8e-84 tr|A9PHZ8|A9PHZ8_POPTR Putative uncharacterized protein OS=Popul... 312 8e-84 tr|A7QZH1|A7QZH1_VITVI Chromosome chr7 scaffold_275, whole genom... 312 8e-84 tr|A7QH45|A7QH45_VITVI Chromosome chr3 scaffold_95, whole genome... 312 8e-84 tr|A7PMS7|A7PMS7_VITVI Chromosome chr14 scaffold_21, whole genom... 312 8e-84 tr|A7KQH5|A7KQH5_EUCGR Alpha-tubulin OS=Eucalyptus grandis GN=TU... 312 8e-84 tr|A5AEW2|A5AEW2_VITVI Putative uncharacterized protein OS=Vitis... 312 8e-84 tr|A9P849|A9P849_POPTR Putative uncharacterized protein OS=Popul... 311 1e-83 tr|Q93XB1|Q93XB1_ROSHC Alpha tubulin subunit OS=Rosa hybrid cult... 311 2e-83 tr|A5BZF5|A5BZF5_VITVI Putative uncharacterized protein (Chromos... 311 2e-83 tr|Q2MIR4|Q2MIR4_CAMSI Alpha tubulin 1 OS=Camellia sinensis GN=T... 311 2e-83 tr|Q53M51|Q53M51_ORYSJ Tubulin alpha-3 chain, putative, expresse... 310 4e-83 tr|Q0PVB1|Q0PVB1_ORYSJ Alpha-tubulin OS=Oryza sativa subsp. japo... 310 4e-83 tr|Q0ITK1|Q0ITK1_ORYSJ Os11g0247300 protein OS=Oryza sativa subs... 310 4e-83 tr|A9P817|A9P817_POPTR Putative uncharacterized protein OS=Popul... 310 4e-83 tr|A6N1N0|A6N1N0_ORYSI Tubulin alpha-3 chain (Fragment) OS=Oryza... 310 4e-83
>tr|Q5G279|Q5G279_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris richardii GN=TUA2 PE=2 SV=1 Length = 266
Score = 313 bits (802), Expect = 5e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 94 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 153
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 154 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDYKFDLM 213
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 214 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 247
>tr|Q5G277|Q5G277_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris richardii GN=TUA2 PE=2 SV=1 Length = 267
Score = 313 bits (802), Expect = 5e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 95 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 154
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 155 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDYKFDLM 214
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 215 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 248
>tr|A5YRY1|A5YRY1_POPTM Alpha-tubulin 5 OS=Populus tremuloides PE=2 SV=1 Length = 451
Score = 313 bits (801), Expect = 6e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDSKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|Q9M3T2|Q9M3T2_BETVE Alpha-tubulin OS=Betula verrucosa GN=atub PE=2 SV=1 Length = 451
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDNKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|Q84UZ5|Q84UZ5_CERRI Alpha-tubulin OS=Ceratopteris richardii GN=TUA1 PE=2 SV=1 Length = 450
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 151/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSRIDFKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 Y KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YCKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|Q84TK6|Q84TK6_POPTM Alpha-tubulin 1 OS=Populus tremuloides PE=2 SV=1 Length = 451
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|Q5ME66|Q5ME66_PSEMZ Alpha tubulin 1 OS=Pseudotsuga menziesii var. menziesii GN=AT1 PE=3 SV=1 Length = 451
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|Q5G283|Q5G283_CERRI Alpha-tubulin (Fragment) OS=Ceratopteris richardii GN=TUA1 PE=2 SV=1 Length = 306
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 151/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 135 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 194
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFS ID KFDLM Sbjct: 195 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSRIDFKFDLM 254
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 Y KRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 255 YCKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 288
>tr|B7UD05|B7UD05_9ROSI Alpha-tubulin OS=Dimocarpus longan PE=2 SV=1 Length = 450
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
>tr|B7TIW7|B7TIW7_BETVE Alpha tubulin OS=Betula verrucosa PE=2 SV=1 Length = 450
Score = 312 bits (800), Expect = 8e-84 Identities = 150/154 (97%), Positives = 152/154 (98%) Frame = +1
Query: 1 EKAYHEQLSVAEITNSAFEPSSMMAKCNPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 180 EKAYHEQLSVAEITNSAFEPSSMMAKC+PRHGKYMACCLMYRGDVVPKDVNAAVATIKTK Sbjct: 279 EKAYHEQLSVAEITNSAFEPSSMMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTK 338
Query: 181 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAICMISNSTSVAEVFSLIDLKFDLM 360 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA+CMISNSTSVAEVFS ID KFDLM Sbjct: 339 RTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLM 398
Query: 361 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 462 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY Sbjct: 399 YAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDY 432
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