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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957371
Clone id TST39A01NGRL0028_D02
Library
Length 419
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_D02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTCCCCTCTGCAGCAGAGGCGAATGGCGGCCACAGTTCGATCCCCACGGTTGGCAGCTCT
GTGACTCCACCTTCTCAACATCAGATTGGCGTCCAAGCTGCAAACAATGGTACAACATGT
GGCTTCCGTTGCGTTGTTTATCGCTCTGGTACTGGTGGTACTTGGATTGCCTTGGCTCCT
TCACTCATTGACGGCTCCTCCCGCGCTTCTTTCCATCTTGCCCATCATCGTTCTCCTTGT
CCTCATTGTTGCTCTCGGATTCTTGTAGGTCCCCGTTCAACTAATTATCCCTTGCTATGA
CGCTCAAAATTCTTCCATATGTAACACTACAGTCCCGCAAGGCACATATTTGAGAATGAG
TTCAACAAAGATATGAGGTGGTTTTCGCAGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q7T2B3
Definition sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio rerio
Align length 48
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_D02, 5'
         (391 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio ...    30   4.9  
sp|P41895|T2FA_YEAST Transcription initiation factor IIF subunit...    29   6.4  
sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial OS=Oen...    29   6.4  
sp|O59925|PGLR_PENEN Polygalacturonase OS=Penicillium expansum G...    29   6.4  
sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa...    29   8.4  

>sp|Q7T2B3|CT094_DANRE UPF0492 protein C20orf94 homolog OS=Danio
           rerio GN=zgc:64090 PE=2 SV=1
          Length = 499

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/48 (31%), Positives = 30/48 (62%)
 Frame = -1

Query: 181 KEPRQSKYHQYQSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGS 38
           ++ ++SK  Q Q+DK+ NGS  + H  ++ +Q++ +  +SQ  Q + S
Sbjct: 258 QDDQESKSGQVQADKEENGSGDVLH--KIAKQTNTQPPQSQDDQEFKS 303


>sp|P41895|T2FA_YEAST Transcription initiation factor IIF subunit
           alpha OS=Saccharomyces cerevisiae GN=TFG1 PE=1 SV=2
          Length = 735

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 19/37 (51%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
 Frame = +1

Query: 19  ANGGHSSIPTV-GSSVTPPSQHQIGVQAAN---NGTT 117
           ANG +SSIPTV GSSV P S   +    +N   NG+T
Sbjct: 212 ANGVNSSIPTVTGSSVPPASPTTVSAVESNGLSNGST 248


>sp|P15758|RT13_OENBE Ribosomal protein S13, mitochondrial
           OS=Oenothera bertiana GN=RPS13 PE=3 SV=2
          Length = 114

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -1

Query: 184 VKEPRQSKYHQYQSDKQRNGSHMLYHCLQLGRQSDVEKVESQSC 53
           +K    +KY   Q ++ R   H+++  L+ G ++D+E+  S SC
Sbjct: 41  IKRKELTKYQIDQIEQMRGQDHVVHWELKRGERADIERFISISC 84


>sp|O59925|PGLR_PENEN Polygalacturonase OS=Penicillium expansum
           GN=PEPG1 PE=3 SV=1
          Length = 378

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 22  NGGHSSIPTVGSSVTPPSQHQIGVQAANNGTTCGFRCVVYRSGTGGTWIALAPS 183
           N G++  PT G  +T  + + +     + GT     C    S +G TW  +A S
Sbjct: 310 NSGYTGSPTTGVPITGLTLNNVHGTVTSKGTDITIECGSSASCSGWTWTKVAVS 363


>sp|O19113|CTGF_PIG Connective tissue growth factor OS=Sus scrofa
           GN=CTGF PE=2 SV=1
          Length = 349

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 70  PSQHQIGVQAANNGTTCGFRCVVYRSG 150
           P+  +IGV  A +G  C F   VYRSG
Sbjct: 87  PANRKIGVCTAKDGAPCVFGGTVYRSG 113
tr_hit_id A4HF28
Definition tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leishmania braziliensis
Align length 120
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957371|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_D02, 5'
         (391 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leish...    35   2.4  
tr|B4IGI0|B4IGI0_DROSE GM11577 OS=Drosophila sechellia GN=GM1157...    34   4.2  
tr|B3NXA6|B3NXA6_DROER GG17733 OS=Drosophila erecta GN=GG17733 P...    34   4.2  
tr|Q8Y1X9|Q8Y1X9_RALSO Type 4 fimbrial pilin signal peptide prot...    33   7.1  
tr|Q6Z8Z8|Q6Z8Z8_ORYSJ Putative zinc-finger protein OS=Oryza sat...    33   7.1  
tr|A3A2B8|A3A2B8_ORYSJ Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A2WZZ7|A2WZZ7_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A4HLY9|A4HLY9_LEIBR Putative uncharacterized protein OS=Leish...    33   7.1  
tr|Q9ZTD9|Q9ZTD9_ARATH Putative transcription factor OS=Arabidop...    33   7.1  
tr|Q9LMT5|Q9LMT5_ARATH F2H15.17 protein OS=Arabidopsis thaliana ...    33   7.1  
tr|Q8LCC8|Q8LCC8_ARATH Myb-like protein, putative OS=Arabidopsis...    33   7.1  
tr|Q6R0C4|Q6R0C4_ARATH MYB transcription factor OS=Arabidopsis t...    33   7.1  
tr|Q5RI33|Q5RI33_DANRE Connective tissue growth factor OS=Danio ...    33   9.3  
tr|Q567D8|Q567D8_DANRE Ctgf protein (Fragment) OS=Danio rerio GN...    33   9.3  
tr|Q3B7E1|Q3B7E1_DANRE Ctgf protein (Fragment) OS=Danio rerio GN...    33   9.3  

>tr|A4HF28|A4HF28_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM26_V2.1750 PE=4 SV=1
          Length = 2404

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 36/120 (30%), Positives = 53/120 (44%), Gaps = 11/120 (9%)
 Frame = +1

Query: 55   SSVTPPSQHQIGVQ-AANNGTTCGFR----CVVYRSGTGGTWIALAPSLIDGSSRASFHL 219
            S+ +P SQHQ   Q AAN+G    F     C   + GT G    ++ +   GSS     L
Sbjct: 1488 STPSPTSQHQHHHQRAANSGGASRFATSPDCASQQGGTSGPGNNMSNTY--GSSHHVNSL 1545

Query: 220  AHHRSPCPHCCSRILVGPRSTN------YPLL*RSKFFHM*HYSPARHIFENEFNKDMRW 381
            AHHR P P   +    G    N      YP+L  ++  ++  Y   + +   EF+  MR+
Sbjct: 1546 AHHRYPSPTHPNGYFTGGSQINLQAGGHYPML-GARPPYIYEYHVGQELLLEEFHAAMRF 1604


>tr|B4IGI0|B4IGI0_DROSE GM11577 OS=Drosophila sechellia GN=GM11577
            PE=4 SV=1
          Length = 1076

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 148  QSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGSNCG 29
            +  +Q+  S  L+   QL +QS  ++    SC PWG  CG
Sbjct: 924  EPQQQQQVSQQLHQLQQLQQQSQQQQSFEASCDPWGGECG 963


>tr|B3NXA6|B3NXA6_DROER GG17733 OS=Drosophila erecta GN=GG17733 PE=4
            SV=1
          Length = 1676

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -1

Query: 148  QSDKQRNGSHMLYHCLQLGRQSDVEKVESQSCQPWGSNCG 29
            +  +Q+  S  L+   QL +QS  ++    SC PWG  CG
Sbjct: 1073 EPQQQQQVSQQLHQLQQLQQQSQQQQSFEASCDPWGGECG 1112


>tr|Q8Y1X9|Q8Y1X9_RALSO Type 4 fimbrial pilin signal peptide protein
           OS=Ralstonia solanacearum GN=pilA PE=3 SV=1
          Length = 168

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/46 (36%), Positives = 25/46 (54%)
 Frame = +1

Query: 46  TVGSSVTPPSQHQIGVQAANNGTTCGFRCVVYRSGTGGTWIALAPS 183
           +VGSSV  P+++   +  A  GT  G   V Y +  GG  +AL P+
Sbjct: 73  SVGSSVFTPTKNVANLTIAGTGTVPGQITVTYTTAAGGGTLALVPT 118


>tr|Q6Z8Z8|Q6Z8Z8_ORYSJ Putative zinc-finger protein OS=Oryza sativa
           subsp. japonica GN=P0501G04.7 PE=4 SV=1
          Length = 454

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 243
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 336 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 388


>tr|A3A2B8|A3A2B8_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_004940 PE=4 SV=1
          Length = 262

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 243
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 144 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 196


>tr|A2WZZ7|A2WZZ7_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05537 PE=4 SV=1
          Length = 431

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/53 (26%), Positives = 26/53 (49%)
 Frame = +1

Query: 85  IGVQAANNGTTCGFRCVVYRSGTGGTWIALAPSLIDGSSRASFHLAHHRSPCP 243
           I   ++NN T   F CV ++S   G+ +  + ++ DG  + + H+      CP
Sbjct: 313 IDTNSSNNNTGSEFPCVNFQSSNTGSLLGGSSNMFDGQDQQTSHIVLPEKSCP 365


>tr|A4HLY9|A4HLY9_LEIBR Putative uncharacterized protein OS=Leishmania
            braziliensis GN=LbrM33_V2.3060 PE=4 SV=1
          Length = 4980

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/76 (25%), Positives = 35/76 (46%)
 Frame = +1

Query: 1    LPSAAEANGGHSSIPTVGSSVTPPSQHQIGVQAANNGTTCGFRCVVYRSGTGGTWIALAP 180
            +P+A+ A  GH++   VG +   PS+H +   +A+ G  C          +  + +A + 
Sbjct: 2567 IPAASSATSGHNTDIAVGQTCQAPSEHGVSRMSAHLGACCAHDSA--GDDSDASSVAASV 2624

Query: 181  SLIDGSSRASFHLAHH 228
             +ID   +AS     H
Sbjct: 2625 DVIDTQLKASSDFRVH 2640


>tr|Q9ZTD9|Q9ZTD9_ARATH Putative transcription factor OS=Arabidopsis
           thaliana GN=MYB52 PE=2 SV=1
          Length = 249

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
 Frame = +3

Query: 6   LCSRGEWRP-----------QFDPHGWQLCDSTFSTSDWRPSCKQWYNMWLP 128
           +CSRG WRP           QF PH W       S    +    +W+N   P
Sbjct: 2   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDP 53


>tr|Q9LMT5|Q9LMT5_ARATH F2H15.17 protein OS=Arabidopsis thaliana
           GN=F2H15.17 PE=4 SV=1
          Length = 248

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%)
 Frame = +3

Query: 6   LCSRGEWRP-----------QFDPHGWQLCDSTFSTSDWRPSCKQWYNMWLP 128
           +CSRG WRP           QF PH W       S    +    +W+N   P
Sbjct: 1   MCSRGHWRPAEDEKLRELVEQFGPHNWNAIAQKLSGRSGKSCRLRWFNQLDP 52