NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957413
Clone id TST39A01NGRL0028_E23
Library
Length 430
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_E23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TTTTTTGTGGCCGTGCGCGAGCTTGATCTTCTCCCCTCGCCTGCGGCACTCCGTTTCAAA
AAAATACACAAGCATACATACATTGCTACACGCACATTCGCGAAGTGTCCAATCAAGCGA
CTCCTCCCATCGGCTTCCTTCCTTCCCTCGCTTGAAGAGCTCAGCGTGCTGATTGCAAGA
GTTAGGTTTCTGTGCAAGAGCTAGGGTTGGATCTCTAATTCCGTTTCCCCATCTCGGTTG
TCAAGGCAAAGGCACTTGCAGCTCTGCGCCATTTGCATCCAGCTGCCAGTTACATATCAT
GGAATGCTCTTTCACAAACATCTCGTTCCTCGTCAGCCCTGGCAGATGAAGATTCCTACT
CTAGCTTTGAAAGTTCGAACGACAGATCCCATGTGACATGGCCTAAGGAGCTGAATGCGT
CCCTTGAAGA
■■Homology search results ■■ -
sp_hit_id Q9SZJ5
Definition sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana
Align length 16
Score (bit) 30.4
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957413|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_E23, 5'
         (430 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondr...    30   3.1  
sp|P87508|OBP1_ANTPE General odorant-binding protein 1 OS=Anther...    30   4.2  
sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taur...    29   7.0  
sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochon...    29   9.1  
sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochon...    29   9.1  

>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial
           OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1
          Length = 517

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 12/16 (75%), Positives = 14/16 (87%)
 Frame = +3

Query: 381 DRSHVTWPKELNASLE 428
           +RS VTWPK+LNA LE
Sbjct: 41  ERSRVTWPKQLNAPLE 56


>sp|P87508|OBP1_ANTPE General odorant-binding protein 1 OS=Antheraea
           pernyi PE=2 SV=1
          Length = 167

 Score = 30.0 bits (66), Expect = 4.2
 Identities = 16/57 (28%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
 Frame = -2

Query: 225 NGIRDPTLALAQKPNSCNQHAELFKRGKEG--SRWEESLDWTLRECACSNVCMLVYF 61
           N ++D TL   Q    C + ++L +   E     W E   +  RE  C+ +CM  +F
Sbjct: 25  NVMKDVTLGFGQALEKCREESQLTEEKMEEFFHFWSEDFKFEHRELGCAILCMSRHF 81


>sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus
            GN=LYST PE=1 SV=1
          Length = 3796

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 6    CGRARA*SSPLACGTPFQKNTQAYIHCYTHIREVSN 113
            CG   A S+    GTP +   ++ IH Y H  E+S+
Sbjct: 3581 CGVITAYSNRFTSGTPSEIEMESQIHLYGHTEEISS 3616


>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2,
           mitochondrial OS=Flaveria pringlei PE=2 SV=1
          Length = 517

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 327 SSSALADEDSYSSFESSNDRSHVTWPKELNASLE 428
           S S+L  E  Y       +R  VTWPK+LNA LE
Sbjct: 29  SMSSLPSEAVYEK-----ERPGVTWPKQLNAPLE 57


>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1,
           mitochondrial OS=Flaveria pringlei PE=2 SV=1
          Length = 517

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +3

Query: 327 SSSALADEDSYSSFESSNDRSHVTWPKELNASLE 428
           S S+L  E  Y       +R  VTWPK+LNA LE
Sbjct: 29  SMSSLPSEAVYEK-----ERPGVTWPKQLNAPLE 57
tr_hit_id Q8W4V3
Definition tr|Q8W4V3|Q8W4V3_CHLRE Serine hydroxymethyltransferase OS=Chlamydomonas reinhardtii
Align length 30
Score (bit) 40.4
E-value 0.045
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957413|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_E23, 5'
         (430 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8W4V3|Q8W4V3_CHLRE Serine hydroxymethyltransferase OS=Chlamy...    40   0.045
tr|Q87H21|Q87H21_VIBPA Putative uncharacterized protein VPA1144 ...    36   0.84 
tr|A6AZ58|A6AZ58_VIBPA CytoChrome c subfamily, putative OS=Vibri...    36   0.84 
tr|A6XMY5|A6XMY5_TRIMO Serine hydroxymethyltransferase OS=Tritic...    35   2.5  
tr|A9NUX0|A9NUX0_PICSI Serine hydroxymethyltransferase OS=Picea ...    33   5.5  
tr|B6NCK6|B6NCK6_BRAFL Putative uncharacterized protein OS=Branc...    33   7.1  
tr|Q0ULG9|Q0ULG9_PHANO Putative uncharacterized protein OS=Phaeo...    33   7.1  

>tr|Q8W4V3|Q8W4V3_CHLRE Serine hydroxymethyltransferase
           OS=Chlamydomonas reinhardtii GN=shmt PE=2 SV=1
          Length = 520

 Score = 40.4 bits (93), Expect = 0.045
 Identities = 17/30 (56%), Positives = 21/30 (70%)
 Frame = +3

Query: 336 ALADEDSYSSFESSNDRSHVTWPKELNASL 425
           AL++E+ YS F     R+HVTWPK LNA L
Sbjct: 32  ALSNEEEYSRFSQDASRAHVTWPKVLNAGL 61


>tr|Q87H21|Q87H21_VIBPA Putative uncharacterized protein VPA1144
           OS=Vibrio parahaemolyticus GN=VPA1144 PE=4 SV=1
          Length = 220

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -2

Query: 291 NWQLDANGAELQVPLP*QPRWGNGIRDP---TLALAQKPNSCNQHAELFKRGKEGSRWEE 121
           NW + ++G E++ P       G+GI  P      +A   ++C+    + ++G    RW+E
Sbjct: 136 NWNMTSSGLEVKSP-------GDGILTPGENMELVAAVCSACHSLHMVTQQGLSRQRWDE 188

Query: 120 SLDWTLRE 97
           SLDW + E
Sbjct: 189 SLDWMIEE 196


>tr|A6AZ58|A6AZ58_VIBPA CytoChrome c subfamily, putative OS=Vibrio
           parahaemolyticus AQ3810 GN=A79_4470 PE=4 SV=1
          Length = 220

 Score = 36.2 bits (82), Expect = 0.84
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
 Frame = -2

Query: 291 NWQLDANGAELQVPLP*QPRWGNGIRDP---TLALAQKPNSCNQHAELFKRGKEGSRWEE 121
           NW + ++G E++ P       G+GI  P      +A   ++C+    + ++G    RW+E
Sbjct: 136 NWNMTSSGLEVKSP-------GDGILTPGENMELVAAVCSACHSLHMVTQQGLSRQRWDE 188

Query: 120 SLDWTLRE 97
           SLDW + E
Sbjct: 189 SLDWMIEE 196


>tr|A6XMY5|A6XMY5_TRIMO Serine hydroxymethyltransferase OS=Triticum
           monococcum PE=2 SV=1
          Length = 510

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 18/40 (45%), Positives = 24/40 (60%)
 Frame = +3

Query: 309 LSQTSRSSSALADEDSYSSFESSNDRSHVTWPKELNASLE 428
           LS   +  S L    S +S  ++ +RS VTWPK+LNA LE
Sbjct: 10  LSARGQPLSRLTPLYSMASLPATEERSAVTWPKQLNAPLE 49


>tr|A9NUX0|A9NUX0_PICSI Serine hydroxymethyltransferase OS=Picea
           sitchensis PE=2 SV=1
          Length = 519

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 16/38 (42%), Positives = 24/38 (63%)
 Frame = +3

Query: 312 SQTSRSSSALADEDSYSSFESSNDRSHVTWPKELNASL 425
           S  ++ +   + E +YS  E   ++SHVTWPK+LNA L
Sbjct: 21  SSVTQFAQRYSSEAAYSRTEK--EKSHVTWPKQLNAPL 56


>tr|B6NCK6|B6NCK6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_93533 PE=4 SV=1
          Length = 698

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
 Frame = -2

Query: 237 PRWGNGIRDPTLA-LAQKPNSCNQ---HAELFKRGKEGSRWEESLDWTLRECACSNVCML 70
           P W  GI+DP+ + L+ +P  CN+   H E+ +      R E + D+TL     +   M+
Sbjct: 433 PSWRGGIQDPSQSLLSVRPGECNEHIIHEEVQRSADRKQRLETNKDYTLHSLNYNRPPMV 492

Query: 69  V 67
           V
Sbjct: 493 V 493


>tr|Q0ULG9|Q0ULG9_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_07395 PE=4 SV=2
          Length = 902

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = -2

Query: 219 IRDPTLALAQKPN---SCNQHAELFKRGKEGSRWEESLDWTLR 100
           +RD +LA  +  N     NQ   LF  G +G+RWEESLD+  R
Sbjct: 245 VRDVSLAHVKSLNLKVGGNQGYLLFSGGLKGTRWEESLDFVAR 287