DK957482 |
Clone id |
TST39A01NGRL0028_H20 |
Library |
TST39 |
Length |
557 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_H20. 5' end sequence. |
Accession |
DK957482 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL143Contig1 |
Sequence |
GAAGGTGTCCCCTGCCGCTGCCCGTCCGAGTGTGAAGGCGGCCATTGTCCCCGTCAGAGC CATGGCTGCGCAAAAGAGCGAGGCAGAGAAGGAGCAGGAGATTATGAAGAGGCGTGCTCT TGTTTTTGGGGCCTTTGCGTCGGCCGTTGTGGTGGCATCCAACATGCAGAACGAGGCCGC CCTTGCAGAGACAGATCCCAGGAGAAAGAGGAACAAGTGCCCCACCATCTGCGTGCAACA GCCCACGGCTTCCTGCTGCTACAGCTATTAGAGAGGGAAGGTGCCACGCCCAAGCGCTTT GTCTGCTGTGATACTTCTTGTTAACATTTCCTGGTGCCATCTGGCCCATCCTTGTAATCT CTATTTATAATTGCAAATGTATCTCCATGTCGGTAACATGCGTCGTTCCTGGCAGTGAGA GAACCTTTGTCTTGATGAGGTCCTGTTTCTTGTCCTGTGACTGGCTATAGGAGGCTGCAT TTTGTGAAAACATTTTAGATAGCAGGAAAGATGAAGGGCTGATGTATTGCAATCTTACTA ACATGACAATTCTGATG |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P46530 |
Definition |
sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio |
Align length |
71 |
Score (bit) |
38.5 |
E-value |
0.022 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957482|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_H20, 5' (557 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 O... 39 0.022 sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like doma... 35 0.25 sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 O... 34 0.42 sp|Q92743|HTRA1_HUMAN Serine protease HTRA1 OS=Homo sapiens GN=H... 34 0.42 sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=... 33 0.72 sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 O... 33 0.72 sp|Q2HJE1|WDR91_BOVIN WD repeat-containing protein 91 OS=Bos tau... 33 1.2 sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3 33 1.2 sp|Q8VCF5|TSN10_MOUSE Tetraspanin-10 OS=Mus musculus GN=Tspan10 ... 32 1.6 sp|P12020|CRIS1_RAT Cysteine-rich secretory protein 1 OS=Rattus ... 32 1.6 sp|Q20942|NAS38_CAEEL Zinc metalloproteinase nas-38 OS=Caenorhab... 32 2.1 sp|Q07008|NOTC1_RAT Neurogenic locus notch homolog protein 1 OS=... 32 2.7 sp|P55944|MT3_PIG Metallothionein-3 OS=Sus scrofa GN=MT3 PE=2 SV=1 32 2.7 sp|P37359|MT3_BOVIN Metallothionein-3 OS=Bos taurus GN=MT3 PE=1 ... 32 2.7 sp|Q2MJS5|MT3_BOSMU Metallothionein-3 OS=Bos mutus grunniens GN=... 32 2.7 sp|Q9WUF2|EGR4_MOUSE Early growth response protein 4 OS=Mus musc... 31 4.7 sp|O13444|ATG15_CLAFU Putative lipase ATG15 OS=Cladosporium fulv... 31 4.7 sp|Q7Z7K2|ZN467_HUMAN Zinc finger protein 467 OS=Homo sapiens GN... 30 6.1 sp|O75095|MEGF6_HUMAN Multiple epidermal growth factor-like doma... 30 6.1 sp|O15018|PDZD2_HUMAN PDZ domain-containing protein 2 OS=Homo sa... 30 8.0
>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a PE=2 SV=1 Length = 2437
Score = 38.5 bits (88), Expect = 0.022 Identities = 26/71 (36%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREG-----AGDYEEACSCFWGLCVGRC-----GGIQ 162 CRCP E G HC R C R G D CSC G C Q Sbjct: 203 CRCPPEYTGPHCQRLYQPCLPSPCRSGGTCVQTSDTTHTCSCLPGFTGQTCEHNVDDCTQ 262
Query: 163 HA-ERGRPCRD 192 HA E G PC D Sbjct: 263 HACENGGPCID 273
>sp|Q80V70|MEGF6_MOUSE Multiple epidermal growth factor-like domains 6 OS=Mus musculus GN=Megf6 PE=2 SV=3 Length = 1572
Score = 35.0 bits (79), Expect = 0.25 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERG 177 C CP GGHC R GC ++R +G E C+C R GG+ HA G Sbjct: 1322 CICPPGKTGGHCER---GCPQDRFGKGC---EHKCAC-------RNGGLCHATNG 1363
>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=1 Length = 2321
Score = 34.3 bits (77), Expect = 0.42 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = +1
Query: 1 EGVPCRCPSECEGGHCPRQSHGCAKE---RGREGAGDYEEACSCFWGLCVGRCGGIQHAE 171 +G CRC EG C R C+ + GR G +C+C G RC Sbjct: 527 DGYECRCAEGFEGTLCDRNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGTRCESQVDEC 586
Query: 172 RGRPCR 189 R +PCR Sbjct: 587 RSQPCR 592
>sp|Q92743|HTRA1_HUMAN Serine protease HTRA1 OS=Homo sapiens GN=HTRA1 PE=1 SV=1 Length = 480
Score = 34.3 bits (77), Expect = 0.42 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Frame = +1
Query: 19 CPSECEGGHCPRQSHGCAKERGREGAGDYE-----EACSCFWGLCVGRCG-GIQ 162 CP CE CP Q C R R+ G E E +C GL G CG G+Q Sbjct: 37 CPDRCEPARCPPQPEHCEGGRARDACGCCEVCGAPEGAAC--GLQEGPCGEGLQ 88
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus GN=Notch3 PE=2 SV=2 Length = 2319
Score = 33.5 bits (75), Expect = 0.72 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = +1
Query: 1 EGVPCRCPSECEGGHCPRQSHGCAKE---RGREGAGDYEEACSCFWGLCVGRCGGIQHAE 171 +G CRC EG C R C+ + GR G +C+C G RC Sbjct: 529 DGYECRCAEGFEGTLCERNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGIRCESQVDEC 588
Query: 172 RGRPCR 189 R +PCR Sbjct: 589 RSQPCR 594
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3 PE=1 SV=1 Length = 2318
Score = 33.5 bits (75), Expect = 0.72 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 3/66 (4%) Frame = +1
Query: 1 EGVPCRCPSECEGGHCPRQSHGCAKE---RGREGAGDYEEACSCFWGLCVGRCGGIQHAE 171 +G CRC EG C R C+ + GR G +C+C G RC Sbjct: 528 DGYECRCAEGFEGTLCERNVDDCSPDPCHHGRCVDGIASFSCACAPGYTGIRCESQVDEC 587
Query: 172 RGRPCR 189 R +PCR Sbjct: 588 RSQPCR 593
>sp|Q2HJE1|WDR91_BOVIN WD repeat-containing protein 91 OS=Bos taurus GN=WDR91 PE=2 SV=2 Length = 746
Score = 32.7 bits (73), Expect = 1.2 Identities = 21/68 (30%), Positives = 33/68 (48%) Frame = +1
Query: 10 PCRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERGRPCR 189 P + P + + ++S G +GRE AG ++ S F GL G QH R R + Sbjct: 278 PAQGPPQTQSS-AKKESFGSQTTKGREPAGAPKDGKSLFGGLAPGESSWSQH--RQRRLQ 334
Query: 190 DRSQEKEE 213 D +E++E Sbjct: 335 DHGKERKE 342
>sp|O60494|CUBN_HUMAN Cubilin OS=Homo sapiens GN=CUBN PE=1 SV=3 Length = 3623
Score = 32.7 bits (73), Expect = 1.2 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 12/49 (24%) Frame = +1
Query: 13 CRCPSE------------CEGGHCPRQSHGCAKERGREGAGDYEEACSC 123 C CP E CEGG R HG ++ RE AG+ + +C C Sbjct: 199 CHCPPETYGPQCASKYDDCEGGSVARCVHGICEDLMREQAGEPKYSCVC 247
>sp|Q8VCF5|TSN10_MOUSE Tetraspanin-10 OS=Mus musculus GN=Tspan10 PE=2 SV=1 Length = 331
Score = 32.3 bits (72), Expect = 1.6 Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Frame = -2
Query: 340 MAPGNVNKKYHSRQSAWAWHLPSLIAVAAGSRGLL--HADG---GALVPLSPGICLCKGG 176 ++ G+ KY S + + LPSL+A+AAG GL + G G VP P + L GG Sbjct: 67 LSTGSNCVKYLIFLSNFLFSLPSLLALAAGLWGLTVKRSQGIGWGGPVPTDPMLMLVLGG 126
Query: 175 LVLHV 161 LV+ V Sbjct: 127 LVVSV 131
>sp|P12020|CRIS1_RAT Cysteine-rich secretory protein 1 OS=Rattus norvegicus GN=Crisp1 PE=2 SV=1 Length = 246
Score = 32.3 bits (72), Expect = 1.6 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = +1
Query: 1 EGVPC-RCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSC 123 EG PC CP CE G C ++ C E GD ++ SC Sbjct: 188 EGEPCDSCPGNCEDGLC---TNSCEYEDNYSNCGDLKKMVSC 226
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B7QDC5 |
Definition |
tr|B7QDC5|B7QDC5_IXOSC Low-density lipoprotein receptor, putative (Fragment) OS=Ixodes scapularis |
Align length |
114 |
Score (bit) |
38.1 |
E-value |
0.32 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957482|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_H20, 5' (557 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B7QDC5|B7QDC5_IXOSC Low-density lipoprotein receptor, putativ... 38 0.32 tr|B3NTE5|B3NTE5_DROER GG18118 OS=Drosophila erecta GN=GG18118 P... 37 0.94 tr|A7SNM7|A7SNM7_NEMVE Predicted protein (Fragment) OS=Nematoste... 35 2.1 tr|A1A5U5|A1A5U5_DANRE Notch1a protein (Putative uncharacterized... 35 2.7 tr|Q69ZY6|Q69ZY6_MOUSE MKIAA0815 protein (Fragment) OS=Mus muscu... 35 2.7 tr|Q3UYW9|Q3UYW9_MOUSE Putative uncharacterized protein OS=Mus m... 35 2.7 tr|B1ASH5|B1ASH5_MOUSE Multiple EGF-like-domains 6 (Fragment) OS... 35 2.7 tr|B1ASH4|B1ASH4_MOUSE Multiple EGF-like-domains 6 (Fragment) OS... 35 2.7 tr|Q0S1I9|Q0S1I9_RHOSR Inositol-1-monophosphatase OS=Rhodococcus... 35 2.7 tr|B3RZ25|B3RZ25_TRIAD Putative uncharacterized protein OS=Trich... 35 2.7 tr|B0CMQ4|B0CMQ4_9ANNE Delta protein OS=Capitella sp. I Grassle ... 35 3.6 tr|A4HSX3|A4HSX3_LEIIN Putative uncharacterized protein (Fragmen... 35 3.6 tr|Q4SDS0|Q4SDS0_TETNG Chromosome 1 SCAF14632, whole genome shot... 34 4.6 tr|A8ILI4|A8ILI4_CHLRE Predicted protein (Fragment) OS=Chlamydom... 34 4.6 tr|Q59FL3|Q59FL3_HUMAN Notch homolog 3 variant (Fragment) OS=Hom... 34 4.6 tr|A8IXJ1|A8IXJ1_CHLRE Predicted protein OS=Chlamydomonas reinha... 34 6.1 tr|B4JLV3|B4JLV3_DROGR GH24528 OS=Drosophila grimshawi GN=GH2452... 34 6.1 tr|O42111|O42111_DANRE MINDIN1 OS=Danio rerio GN=spon2a PE=2 SV=1 33 7.9 tr|B3DGW3|B3DGW3_DANRE Spondin 2a, extracellular matrix protein ... 33 7.9 tr|B0V2W1|B0V2W1_MOUSE Notch gene homolog 3 (Drosophila) OS=Mus ... 33 7.9 tr|A8JK52|A8JK52_CHLRE Predicted protein (Fragment) OS=Chlamydom... 33 7.9 tr|B4Q2Y9|B4Q2Y9_DROYA GE15524 OS=Drosophila yakuba GN=GE15524 P... 33 7.9 tr|B4P2Z8|B4P2Z8_DROYA GE15821 OS=Drosophila yakuba GN=GE15821 P... 33 7.9 tr|A0MK40|A0MK40_9CRUS Notch protein OS=Parhyale hawaiensis PE=2... 33 7.9
>tr|B7QDC5|B7QDC5_IXOSC Low-density lipoprotein receptor, putative (Fragment) OS=Ixodes scapularis GN=IscW_ISCW013413 PE=4 SV=1 Length = 350
Score = 38.1 bits (87), Expect = 0.32 Identities = 36/114 (31%), Positives = 45/114 (39%), Gaps = 12/114 (10%) Frame = +1
Query: 13 CRCPS-ECEGGHCPRQSHGCAKERGREGAGDYEEACS-----CFWGLCVG---RCGGIQH 165 CR C+ G C R S C K R D E+ C+ C G C+ RC G H Sbjct: 133 CRADEFRCKSGECIRISGRCDKRRECPDGSDEEDCCTSEEFHCKSGECITKHLRCDGHYH 192
Query: 166 AERGRPCRDRSQE---KEEQVPHHLRATAHGFLLLQLLEREGATPKRFVCCDTS 318 CRD S E + Q+ ++ A A Q +ER RF C D S Sbjct: 193 ------CRDGSDETGCRTCQLDQYVCANA------QCIERSKRCDGRFDCTDFS 234
>tr|B3NTE5|B3NTE5_DROER GG18118 OS=Drosophila erecta GN=GG18118 PE=4 SV=1 Length = 496
Score = 36.6 bits (83), Expect = 0.94 Identities = 32/83 (38%), Positives = 39/83 (46%), Gaps = 8/83 (9%) Frame = +1
Query: 85 REGAGDYEEACSCFWGLCVGRCGGIQHAERGRPC-----RDRSQEKE--EQVPHHLRATA 243 R GA DY A F GLC+G C G E G PC R R Q E E + HL+A Sbjct: 3 RRGAPDYVSAL-IFTGLCLGFCRGYFSLEVGDPCPTANYRSRCQPLEDCETLATHLQA-- 59
Query: 244 HGFLLLQLLEREGATPK-RFVCC 309 G L L+ + G T + +CC Sbjct: 60 -GRLTLKAVMNCGFTTRSEKICC 81
>tr|A7SNM7|A7SNM7_NEMVE Predicted protein (Fragment) OS=Nematostella vectensis GN=v1g125015 PE=4 SV=1 Length = 1255
Score = 35.4 bits (80), Expect = 2.1 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGA----GDYEEACSCFWGLCVGRC 150 C CP+ GG C +++GC + GA Y C+C G RC Sbjct: 1053 CNCPAGYSGGRCEDKTNGCRPDSCLNGATCTETSYGHRCACVAGFSGNRC 1102
>tr|A1A5U5|A1A5U5_DANRE Notch1a protein (Putative uncharacterized protein) (Fragment) OS=Danio rerio GN=notch1a PE=2 SV=1 Length = 423
Score = 35.0 bits (79), Expect = 2.7 Identities = 25/71 (35%), Positives = 25/71 (35%), Gaps = 11/71 (15%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREG-----AGDYEEACSCFWGLCVGRC-----GGIQ 162 CRCP E G HC R C R G D CSC G C Q Sbjct: 203 CRCPPEYTGPHCQRLYQPCLPSPCRSGGTCVQTSDTTHTCSCLPGFTGQTCEHNVDDCTQ 262
Query: 163 HA-ERGRPCRD 192 HA E G C D Sbjct: 263 HACENGGRCID 273
>tr|Q69ZY6|Q69ZY6_MOUSE MKIAA0815 protein (Fragment) OS=Mus musculus GN=Megf6 PE=2 SV=1 Length = 835
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERG 177 C CP GGHC R GC ++R +G E C+C R GG+ HA G Sbjct: 585 CICPPGKTGGHCER---GCPQDRFGKGC---EHKCAC-------RNGGLCHATNG 626
>tr|Q3UYW9|Q3UYW9_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Megf6 PE=2 SV=1 Length = 546
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERG 177 C CP GGHC R GC ++R +G E C+C R GG+ HA G Sbjct: 296 CICPPGKTGGHCER---GCPQDRFGKGC---EHKCAC-------RNGGLCHATNG 337
>tr|B1ASH5|B1ASH5_MOUSE Multiple EGF-like-domains 6 (Fragment) OS=Mus musculus GN=Megf6 PE=4 SV=1 Length = 331
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERG 177 C CP GGHC R GC ++R +G E C+C R GG+ HA G Sbjct: 189 CICPPGKTGGHCER---GCPQDRFGKGC---EHKCAC-------RNGGLCHATNG 230
>tr|B1ASH4|B1ASH4_MOUSE Multiple EGF-like-domains 6 (Fragment) OS=Mus musculus GN=Megf6 PE=4 SV=1 Length = 1192
Score = 35.0 bits (79), Expect = 2.7 Identities = 21/55 (38%), Positives = 26/55 (47%) Frame = +1
Query: 13 CRCPSECEGGHCPRQSHGCAKERGREGAGDYEEACSCFWGLCVGRCGGIQHAERG 177 C CP GGHC R GC ++R +G E C+C R GG+ HA G Sbjct: 1041 CICPPGKTGGHCER---GCPQDRFGKGC---EHKCAC-------RNGGLCHATNG 1082
>tr|Q0S1I9|Q0S1I9_RHOSR Inositol-1-monophosphatase OS=Rhodococcus sp. (strain RHA1) GN=RHA1_ro06825 PE=4 SV=1 Length = 306
Score = 35.0 bits (79), Expect = 2.7 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Frame = -2
Query: 340 MAPGNVNKKYHSRQSAWAWHLPSLIAVAAGSRGLL------HADGGALVPLSPGICLCKG 179 +A G V+ + S W W SLIA AG+R + ADG +V +PGI Sbjct: 232 VAAGRVDAHFEHGLSPWDWAAGSLIATEAGARVRIPSPQTSSADGDVVVAAAPGIADALD 291
Query: 178 GLVLHVG 158 L +G Sbjct: 292 ALFAEIG 298
>tr|B3RZ25|B3RZ25_TRIAD Putative uncharacterized protein OS=Trichoplax adhaerens GN=TRIADDRAFT_57302 PE=4 SV=1 Length = 423
Score = 35.0 bits (79), Expect = 2.7 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 5/68 (7%) Frame = +1
Query: 4 GVPCRCPSECEGGHCPRQSHGCAKERGREG-----AGDYEEACSCFWGLCVGRCGGIQHA 168 G C+CP++ G C + H C K + G G C CF C ++ Sbjct: 200 GYTCQCPNDWTGIRCEKDLHICRKSPCQNGGFCRNTGPDAYTCICFHSFTGRHCEQDLNS 259
Query: 169 ERGRPCRD 192 R PCR+ Sbjct: 260 CRSLPCRN 267
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