DK957497 |
Clone id |
TST39A01NGRL0028_I11 |
Library |
TST39 |
Length |
650 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_I11. 5' end sequence. |
Accession |
DK957497 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1877Contig1 |
Sequence |
GGATAATTTTGCCTGTGTCATTGTGCGTGTCAGAGGGAGGGAGCCCTGAGCCTAGTGTTT TGAGAGAGAGAGAAAGAGAGAGAGAGAGACAACCCAAGTTCGCAATTCGACATCTGACTG CAAAGATTTGCGCCATCGACCTCAGAGCACAAATATACGCACACACAGAGAGAGAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAATATACGCGCGCGCACACA CACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGA GAGAGAGAGAGAGAGAGAGAGAGTTTTCTGCACCTAATCTGCCGCCTTTTCAAGATCTTC CATTGCTAGGATGATATCGTCCCCTCAGAGCAAGAATTGGATGGCATTTTTCGACGATAA CCTCCTCGATGACCCACCCCAACCTAATTCATTCTTCTGGTGTGGCGTCAATGAGCAGGC TGATCTAAGTGTTGACAATAGCTGTTGCAGAACGAATAGTGACGAGCAAGAAAAAGCCAC ATCGAGGAAGAGGTCTCGAGATGAATCTACAAGGCGCACACCTAGCAAAGCATGCCGAGA GAAGATGCGTAGGGATCGACTCAACGACAGGTTTGCTGAGTTGAGCACCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9C682 |
Definition |
sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis thaliana |
Align length |
89 |
Score (bit) |
60.5 |
E-value |
8.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TJS4 |
Definition |
tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
68 |
Score (bit) |
82.4 |
E-value |
2.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957497|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_I11, 5' (650 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella paten... 82 2e-14 tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea... 80 8e-14 tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella paten... 69 3e-10 tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medic... 55 4e-06 tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Popul... 54 6e-06 tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome... 54 1e-05 tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa... 52 2e-05 tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotia... 52 2e-05 tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05 tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medic... 52 3e-05 tr|B6T879|B6T879_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 50 1e-04 tr|B4FUY2|B4FUY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 50 1e-04 tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa... 50 2e-04 tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza... 50 2e-04 tr|B4FGY4|B4FGY4_MAIZE Putative uncharacterized protein OS=Zea m... 50 2e-04 tr|B6SST8|B6SST8_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 49 2e-04 tr|B4FXQ6|B4FXQ6_MAIZE Putative uncharacterized protein OS=Zea m... 48 5e-04 tr|A7PXK9|A7PXK9_VITVI Chromosome chr12 scaffold_36, whole genom... 48 6e-04 tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomit... 47 0.001 tr|Q84PA6|Q84PA6_ORYSJ Helix-loop-helix-like protein (Fragment) ... 46 0.002 tr|Q6ZKI8|Q6ZKI8_ORYSJ Os08g0138500 protein OS=Oryza sativa subs... 46 0.002 tr|A3BPH0|A3BPH0_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.002 tr|A2YR23|A2YR23_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002 tr|B6TNC2|B6TNC2_MAIZE BHLH transcription factor OS=Zea mays PE=... 45 0.003 tr|B4FRK4|B4FRK4_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.003 tr|A3BKT7|A3BKT7_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.011 tr|Q2R1K8|Q2R1K8_ORYSJ Helix-loop-helix DNA-binding domain conta... 39 0.36 tr|B8BLB2|B8BLB2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.36 tr|A3CCS5|A3CCS5_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.47 tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome ... 37 0.80
>tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_195760 PE=4 SV=1 Length = 238
Score = 82.4 bits (202), Expect = 2e-14 Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 3/68 (4%) Frame = +2
Query: 452 FFWCGVN---EQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRL 622 FFWC EQ D S+DN C + SD EK+ SRKRSR+E + + +KACREKMRRDRL Sbjct: 31 FFWCTTQQPVEQIDCSIDNECSKGESDVPEKSCSRKRSREEGSSGSGNKACREKMRRDRL 90
Query: 623 NDRFAELS 646 NDRF +LS Sbjct: 91 NDRFLDLS 98
>tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 238
Score = 80.5 bits (197), Expect = 8e-14 Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 7/96 (7%) Frame = +2
Query: 383 PQSKNWMAFFXXXXXXXXXXXXS---FFWCG--VNEQADLS--VDNSCCRTNSDEQEKAT 541 PQS W+++F FFWCG +N+Q D+S V+ + DEQEK Sbjct: 4 PQSNKWLSYFDEPLLDEVGVGQPANPFFWCGPGINDQPDVSGSVEIDGSNKDIDEQEKLC 63
Query: 542 SRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649 RKR R+ES+ SKACREKMRRDRLNDRF ELS+ Sbjct: 64 PRKRPREESSGGPGSKACREKMRRDRLNDRFMELSS 99
>tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_67124 PE=4 SV=1 Length = 201
Score = 68.6 bits (166), Expect = 3e-10 Identities = 32/52 (61%), Positives = 40/52 (76%) Frame = +2
Query: 491 VDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELS 646 +DN C + +SD EK+ SRKRSR+++ +KACREKMRRDRLNDRF ELS Sbjct: 10 IDNECSKGDSDVLEKSCSRKRSREDACSGAGNKACREKMRRDRLNDRFLELS 61
>tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 237
Score = 55.1 bits (131), Expect = 4e-06 Identities = 28/60 (46%), Positives = 40/60 (66%) Frame = +2
Query: 470 NEQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649 N +++S + +SD +++ S+KR R ES T SKACREK+RRDRLND+F EL + Sbjct: 42 NLSSNVSAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGS 101
>tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Populus jackii PE=2 SV=1 Length = 263
Score = 54.3 bits (129), Expect = 6e-06 Identities = 25/43 (58%), Positives = 32/43 (74%) Frame = +2
Query: 521 DEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649 D Q++ S+KR R ES + SKACREK+RRDRLND+F EL + Sbjct: 85 DVQKEPCSKKRGRSESCSASSSKACREKLRRDRLNDKFIELGS 127
>tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00027432001 PE=4 SV=1 Length = 237
Score = 53.5 bits (127), Expect = 1e-05 Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Frame = +2
Query: 452 FFWCGV---NEQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRL 622 F W V N A++S + +SD ++ S+KR R ES + SKACREK+RRDRL Sbjct: 33 FAWTPVQALNTSANVSGEIDGSFGDSDGIKETGSKKRVRSESCGASSSKACREKLRRDRL 92
Query: 623 NDRFAELST 649 ND+F EL + Sbjct: 93 NDKFMELGS 101
>tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa subsp. japonica GN=OJ1442_E05.19 PE=2 SV=1 Length = 236
Score = 52.4 bits (124), Expect = 2e-05 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Frame = +2
Query: 482 DLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTP-SKACREKMRRDRLNDRFAELST 649 D+S D C +++ KR RDES+ P SKACREK+RRDRLNDRF ELS+ Sbjct: 42 DVSGDTCCL-------DQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSS 91
>tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotiana tabacum PE=2 SV=1 Length = 233
Score = 52.4 bits (124), Expect = 2e-05 Identities = 26/42 (61%), Positives = 31/42 (73%) Frame = +2
Query: 518 SDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAEL 643 SD ++ S+KR+R ES T SKACREK RRDRLND+F EL Sbjct: 56 SDYPKENGSKKRARVESCAPTSSKACREKQRRDRLNDKFTEL 97
>tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_05583 PE=4 SV=1 Length = 236
Score = 52.4 bits (124), Expect = 2e-05 Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%) Frame = +2
Query: 482 DLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTP-SKACREKMRRDRLNDRFAELST 649 D+S D C +++ KR RDES+ P SKACREK+RRDRLNDRF ELS+ Sbjct: 42 DVSGDTCCL-------DQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSS 91
>tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 230
Score = 52.0 bits (123), Expect = 3e-05 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%) Frame = +2
Query: 383 PQSKNWMAFFXXXXXXXXXXXXSFFWCGVN---EQADLSVDNSCCRTNSDEQEKATSRKR 553 P++ NW+ + SF + + +D+S +SD ++ S+KR Sbjct: 4 PENTNWLFDYPLIDEIPVSVDGSFAFTWPPPHLSNGGIEMDDSSL-VDSDGIKEPGSKKR 62
Query: 554 SRDESTRRTPSKACREKMRRDRLNDRFAELST 649 R +S + SKACREK+RRDRLND+F EL + Sbjct: 63 GRSDSCAPSSSKACREKLRRDRLNDKFVELGS 94
|