DK957497
Clone id TST39A01NGRL0028_I11
Library
Length 650
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_I11. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGATAATTTTGCCTGTGTCATTGTGCGTGTCAGAGGGAGGGAGCCCTGAGCCTAGTGTTT
TGAGAGAGAGAGAAAGAGAGAGAGAGAGACAACCCAAGTTCGCAATTCGACATCTGACTG
CAAAGATTTGCGCCATCGACCTCAGAGCACAAATATACGCACACACAGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCACAAATATACGCGCGCGCACACA
CACACACACACACACACACACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGATAGAGA
GAGAGAGAGAGAGAGAGAGAGAGTTTTCTGCACCTAATCTGCCGCCTTTTCAAGATCTTC
CATTGCTAGGATGATATCGTCCCCTCAGAGCAAGAATTGGATGGCATTTTTCGACGATAA
CCTCCTCGATGACCCACCCCAACCTAATTCATTCTTCTGGTGTGGCGTCAATGAGCAGGC
TGATCTAAGTGTTGACAATAGCTGTTGCAGAACGAATAGTGACGAGCAAGAAAAAGCCAC
ATCGAGGAAGAGGTCTCGAGATGAATCTACAAGGCGCACACCTAGCAAAGCATGCCGAGA
GAAGATGCGTAGGGATCGACTCAACGACAGGTTTGCTGAGTTGAGCACCT
■■Homology search results ■■ -
sp_hit_id Q9C682
Definition sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis thaliana
Align length 89
Score (bit) 60.5
E-value 8.0e-09
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957497|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_I11, 5'
(650 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsi... 60 8e-09
sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis th... 59 2e-08
sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis... 45 3e-04
sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsi... 42 0.004
sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis... 34 0.76
sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4 OS... 33 1.7
sp|Q5R8W6|CROP_PONAB Cisplatin resistance-associated overexpress... 33 1.7
sp|Q5SUF2|CROP_MOUSE Cisplatin resistance-associated overexpress... 33 1.7
sp|O95232|CROP_HUMAN Cisplatin resistance-associated overexpress... 33 1.7
sp|Q3SX41|CROP_BOVIN Cisplatin resistance-associated overexpress... 33 1.7
sp|Q5B8K7|HIR3_EMENI Histone transcription regulator 3 homolog O... 32 3.8
sp|P90727|U2AF2_CAEBR Splicing factor U2AF 65 kDa subunit OS=Cae... 31 4.9
sp|Q93V43|TCP2_ARATH Transcription factor TCP2 OS=Arabidopsis th... 31 4.9
sp|Q7SI59|CWC25_NEUCR Pre-mRNA-splicing factor cwc-25 OS=Neurosp... 31 4.9
sp|Q08170|SFRS4_HUMAN Splicing factor, arginine/serine-rich 4 OS... 31 6.4
sp|Q9LT23|BH121_ARATH Transcription factor bHLH121 OS=Arabidopsi... 31 6.4
sp|Q2NU43|PLSX_SODGM Fatty acid/phospholipid synthesis protein p... 30 8.4
sp|Q4IJ11|IWS1_GIBZE Transcription factor IWS1 OS=Gibberella zea... 30 8.4
sp|Q32N87|HDGR2_XENLA Hepatoma-derived growth factor-related pro... 30 8.4
sp|Q551H4|FRAY2_DICDI Serine/threonine-protein kinase fray2 OS=D... 30 8.4
sp|Q09228|EGL27_CAEEL Egg-laying defective protein 27 OS=Caenorh... 30 8.4
sp|Q8W2F2|BH011_ARATH Transcription factor bHLH11 OS=Arabidopsis... 30 8.4

>sp|Q9C682|BH115_ARATH Transcription factor bHLH115 OS=Arabidopsis
thaliana GN=BHLH115 PE=2 SV=1
Length = 226

Score = 60.5 bits (145), Expect = 8e-09
Identities = 33/89 (37%), Positives = 52/89 (58%)
Frame = +2

Query: 383 PQSKNWMAFFXXXXXXXXXXXXSFFWCGVNEQADLSVDNSCCRTNSDEQEKATSRKRSRD 562
P++ NW++ + +F W ++ A +SV+ ++D ++ +SRKR +
Sbjct: 4 PENTNWLSDYPLIEGAFSDQNPTFPW-QIDGSATVSVEVDGFLCDADVIKEPSSRKRIKT 62

Query: 563 ESTRRTPSKACREKMRRDRLNDRFAELST 649
ES + SKACREK RRDRLND+F ELS+
Sbjct: 63 ESCTGSNSKACREKQRRDRLNDKFTELSS 91


>sp|Q9FH37|ILR3_ARATH Transcription factor ILR3 OS=Arabidopsis
thaliana GN=ILR3 PE=1 SV=1
Length = 234

Score = 58.9 bits (141), Expect = 2e-08
Identities = 36/93 (38%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Frame = +2

Query: 383 PQSKNWMA-FFXXXXXXXXXXXXSFFW-----CGVNEQADLSVDNSCCRTNSDEQEKATS 544
P++ NW+ F W GV+ + VD S NS+ ++ S
Sbjct: 4 PENANWICDLIDADYGSFTIQGPGFSWPVQQPIGVSSNSSAGVDGSA--GNSEASKEPGS 61

Query: 545 RKRSRDESTRRTPSKACREKMRRDRLNDRFAEL 643
+KR R ES+ T SKACREK RRDRLND+F EL
Sbjct: 62 KKRGRCESSSATSSKACREKQRRDRLNDKFMEL 94


>sp|Q9LTC7|BH034_ARATH Transcription factor bHLH34 OS=Arabidopsis
thaliana GN=BHLH34 PE=2 SV=1
Length = 320

Score = 45.4 bits (106), Expect = 3e-04
Identities = 21/43 (48%), Positives = 31/43 (72%)
Frame = +2

Query: 521 DEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649
+E E+ S KR R S + +KACREK+RR++LND+F +LS+
Sbjct: 145 EEFEEECSGKRRRTGSCSKPGTKACREKLRREKLNDKFMDLSS 187


>sp|Q8L467|BH104_ARATH Transcription factor bHLH104 OS=Arabidopsis
thaliana GN=BHLH104 PE=2 SV=1
Length = 283

Score = 41.6 bits (96), Expect = 0.004
Identities = 22/68 (32%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Frame = +2

Query: 461 CGVNEQADLSVDNS----CCRTNSDEQEKATSRKRSRDES-TRRTPSKACREKMRRDRLN 625
C V ++ ++ +++ + + + SRKR+R S +R +KACRE++RR++LN
Sbjct: 88 CEVVQEEEVEINSGSSGGAVKEEQEHLDDDCSRKRARTGSCSRGGGTKACRERLRREKLN 147

Query: 626 DRFAELST 649
+RF +LS+
Sbjct: 148 ERFMDLSS 155


>sp|Q9SN74|BH047_ARATH Transcription factor bHLH47 OS=Arabidopsis
thaliana GN=BHLH47 PE=2 SV=1
Length = 240

Score = 33.9 bits (76), Expect = 0.76
Identities = 18/45 (40%), Positives = 29/45 (64%)
Frame = +2

Query: 512 TNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELS 646
T+SDE AT+ +R R + +KA RE+++R+ LN+ F EL+
Sbjct: 8 TSSDEAN-ATADERCRKGKVPKRINKAVRERLKREHLNELFIELA 51


>sp|Q8VE97|SFRS4_MOUSE Splicing factor, arginine/serine-rich 4
OS=Mus musculus GN=Sfrs4 PE=2 SV=1
Length = 489

Score = 32.7 bits (73), Expect = 1.7
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +2

Query: 488 SVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649
S S R+ S ++K RKRSRDES R+ SK+ R + + + + + S+
Sbjct: 335 SRSRSRSRSRSRSKDKRKGRKRSRDESRSRSRSKSERSRKHSSKRDSKVSSSSS 388


>sp|Q5R8W6|CROP_PONAB Cisplatin resistance-associated overexpressed
protein OS=Pongo abelii GN=CROP PE=2 SV=1
Length = 432

Score = 32.7 bits (73), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2

Query: 494 DNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDR 631
D C R+ ++ ++ R+RSR RR+ S E+ R R DR
Sbjct: 305 DRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDR 350


>sp|Q5SUF2|CROP_MOUSE Cisplatin resistance-associated overexpressed
protein OS=Mus musculus GN=Crop PE=1 SV=1
Length = 432

Score = 32.7 bits (73), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2

Query: 494 DNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDR 631
D C R+ ++ ++ R+RSR RR+ S E+ R R DR
Sbjct: 305 DRRCSRSRDHKRSRSRDRRRSRSRDRRRSRSHDRSERKHRSRSRDR 350


>sp|O95232|CROP_HUMAN Cisplatin resistance-associated overexpressed
protein OS=Homo sapiens GN=CROP PE=1 SV=2
Length = 432

Score = 32.7 bits (73), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2

Query: 494 DNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDR 631
D C R+ ++ ++ R+RSR RR+ S E+ R R DR
Sbjct: 305 DRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDR 350


>sp|Q3SX41|CROP_BOVIN Cisplatin resistance-associated overexpressed
protein OS=Bos taurus GN=CROP PE=2 SV=1
Length = 432

Score = 32.7 bits (73), Expect = 1.7
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2

Query: 494 DNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDR 631
D C R+ ++ ++ R+RSR RR+ S E+ R R DR
Sbjct: 305 DRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDRSERKHRSRSRDR 350


tr_hit_id A9TJS4
Definition tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 68
Score (bit) 82.4
E-value 2.0e-14
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957497|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_I11, 5'
(650 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella paten... 82 2e-14
tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea... 80 8e-14
tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella paten... 69 3e-10
tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medic... 55 4e-06
tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Popul... 54 6e-06
tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome... 54 1e-05
tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa... 52 2e-05
tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotia... 52 2e-05
tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza... 52 2e-05
tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medic... 52 3e-05
tr|B6T879|B6T879_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 50 1e-04
tr|B4FUY2|B4FUY2_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 50 1e-04
tr|Q7XXQ5|Q7XXQ5_ORYSJ BHLH transcription factor OS=Oryza sativa... 50 2e-04
tr|B8B796|B8B796_ORYSI Putative uncharacterized protein OS=Oryza... 50 2e-04
tr|B4FGY4|B4FGY4_MAIZE Putative uncharacterized protein OS=Zea m... 50 2e-04
tr|B6SST8|B6SST8_MAIZE DNA binding protein OS=Zea mays PE=2 SV=1 49 2e-04
tr|B4FXQ6|B4FXQ6_MAIZE Putative uncharacterized protein OS=Zea m... 48 5e-04
tr|A7PXK9|A7PXK9_VITVI Chromosome chr12 scaffold_36, whole genom... 48 6e-04
tr|A9TH67|A9TH67_PHYPA Predicted protein (Fragment) OS=Physcomit... 47 0.001
tr|Q84PA6|Q84PA6_ORYSJ Helix-loop-helix-like protein (Fragment) ... 46 0.002
tr|Q6ZKI8|Q6ZKI8_ORYSJ Os08g0138500 protein OS=Oryza sativa subs... 46 0.002
tr|A3BPH0|A3BPH0_ORYSJ Putative uncharacterized protein OS=Oryza... 46 0.002
tr|A2YR23|A2YR23_ORYSI Putative uncharacterized protein OS=Oryza... 46 0.002
tr|B6TNC2|B6TNC2_MAIZE BHLH transcription factor OS=Zea mays PE=... 45 0.003
tr|B4FRK4|B4FRK4_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.003
tr|A3BKT7|A3BKT7_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.011
tr|Q2R1K8|Q2R1K8_ORYSJ Helix-loop-helix DNA-binding domain conta... 39 0.36
tr|B8BLB2|B8BLB2_ORYSI Putative uncharacterized protein OS=Oryza... 39 0.36
tr|A3CCS5|A3CCS5_ORYSJ Putative uncharacterized protein OS=Oryza... 38 0.47
tr|A7P863|A7P863_VITVI Chromosome chr3 scaffold_8, whole genome ... 37 0.80

>tr|A9TJS4|A9TJS4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_195760 PE=4 SV=1
Length = 238

Score = 82.4 bits (202), Expect = 2e-14
Identities = 40/68 (58%), Positives = 48/68 (70%), Gaps = 3/68 (4%)
Frame = +2

Query: 452 FFWCGVN---EQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRL 622
FFWC EQ D S+DN C + SD EK+ SRKRSR+E + + +KACREKMRRDRL
Sbjct: 31 FFWCTTQQPVEQIDCSIDNECSKGESDVPEKSCSRKRSREEGSSGSGNKACREKMRRDRL 90

Query: 623 NDRFAELS 646
NDRF +LS
Sbjct: 91 NDRFLDLS 98


>tr|A9NRC9|A9NRC9_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 238

Score = 80.5 bits (197), Expect = 8e-14
Identities = 46/96 (47%), Positives = 57/96 (59%), Gaps = 7/96 (7%)
Frame = +2

Query: 383 PQSKNWMAFFXXXXXXXXXXXXS---FFWCG--VNEQADLS--VDNSCCRTNSDEQEKAT 541
PQS W+++F FFWCG +N+Q D+S V+ + DEQEK
Sbjct: 4 PQSNKWLSYFDEPLLDEVGVGQPANPFFWCGPGINDQPDVSGSVEIDGSNKDIDEQEKLC 63

Query: 542 SRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649
RKR R+ES+ SKACREKMRRDRLNDRF ELS+
Sbjct: 64 PRKRPREESSGGPGSKACREKMRRDRLNDRFMELSS 99


>tr|A9RJX7|A9RJX7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_67124 PE=4 SV=1
Length = 201

Score = 68.6 bits (166), Expect = 3e-10
Identities = 32/52 (61%), Positives = 40/52 (76%)
Frame = +2

Query: 491 VDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELS 646
+DN C + +SD EK+ SRKRSR+++ +KACREKMRRDRLNDRF ELS
Sbjct: 10 IDNECSKGDSDVLEKSCSRKRSREDACSGAGNKACREKMRRDRLNDRFLELS 61


>tr|B7FHK4|B7FHK4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 237

Score = 55.1 bits (131), Expect = 4e-06
Identities = 28/60 (46%), Positives = 40/60 (66%)
Frame = +2

Query: 470 NEQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649
N +++S + +SD +++ S+KR R ES T SKACREK+RRDRLND+F EL +
Sbjct: 42 NLSSNVSAEVDGSLGDSDGLKESGSKKRVRSESCAATSSKACREKLRRDRLNDKFIELGS 101


>tr|A9PJ95|A9PJ95_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 263

Score = 54.3 bits (129), Expect = 6e-06
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2

Query: 521 DEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAELST 649
D Q++ S+KR R ES + SKACREK+RRDRLND+F EL +
Sbjct: 85 DVQKEPCSKKRGRSESCSASSSKACREKLRRDRLNDKFIELGS 127


>tr|A7P102|A7P102_VITVI Chromosome chr19 scaffold_4, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00027432001
PE=4 SV=1
Length = 237

Score = 53.5 bits (127), Expect = 1e-05
Identities = 31/69 (44%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +2

Query: 452 FFWCGV---NEQADLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTPSKACREKMRRDRL 622
F W V N A++S + +SD ++ S+KR R ES + SKACREK+RRDRL
Sbjct: 33 FAWTPVQALNTSANVSGEIDGSFGDSDGIKETGSKKRVRSESCGASSSKACREKLRRDRL 92

Query: 623 NDRFAELST 649
ND+F EL +
Sbjct: 93 NDKFMELGS 101


>tr|Q6ZGM4|Q6ZGM4_ORYSJ BHLH transcription factor OS=Oryza sativa
subsp. japonica GN=OJ1442_E05.19 PE=2 SV=1
Length = 236

Score = 52.4 bits (124), Expect = 2e-05
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2

Query: 482 DLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTP-SKACREKMRRDRLNDRFAELST 649
D+S D C +++ KR RDES+ P SKACREK+RRDRLNDRF ELS+
Sbjct: 42 DVSGDTCCL-------DQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSS 91


>tr|B5AYF5|B5AYF5_TOBAC Basic helix-loop-helix protein OS=Nicotiana
tabacum PE=2 SV=1
Length = 233

Score = 52.4 bits (124), Expect = 2e-05
Identities = 26/42 (61%), Positives = 31/42 (73%)
Frame = +2

Query: 518 SDEQEKATSRKRSRDESTRRTPSKACREKMRRDRLNDRFAEL 643
SD ++ S+KR+R ES T SKACREK RRDRLND+F EL
Sbjct: 56 SDYPKENGSKKRARVESCAPTSSKACREKQRRDRLNDKFTEL 97


>tr|A2X043|A2X043_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_05583 PE=4 SV=1
Length = 236

Score = 52.4 bits (124), Expect = 2e-05
Identities = 30/57 (52%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Frame = +2

Query: 482 DLSVDNSCCRTNSDEQEKATSRKRSRDESTRRTP-SKACREKMRRDRLNDRFAELST 649
D+S D C +++ KR RDES+ P SKACREK+RRDRLNDRF ELS+
Sbjct: 42 DVSGDTCCL-------DQSVLGKRGRDESSSSGPKSKACREKIRRDRLNDRFLELSS 91


>tr|B7FHX6|B7FHX6_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 230

Score = 52.0 bits (123), Expect = 3e-05
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Frame = +2

Query: 383 PQSKNWMAFFXXXXXXXXXXXXSFFWCGVN---EQADLSVDNSCCRTNSDEQEKATSRKR 553
P++ NW+ + SF + + +D+S +SD ++ S+KR
Sbjct: 4 PENTNWLFDYPLIDEIPVSVDGSFAFTWPPPHLSNGGIEMDDSSL-VDSDGIKEPGSKKR 62

Query: 554 SRDESTRRTPSKACREKMRRDRLNDRFAELST 649
R +S + SKACREK+RRDRLND+F EL +
Sbjct: 63 GRSDSCAPSSSKACREKLRRDRLNDKFVELGS 94