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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957536
Clone id TST39A01NGRL0028_K02
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_K02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GATGATGCAAGCCTGGTTAAGCTTGAAGTCATGCCCGAACAGGAAGGTTGATTGATTTGC
TCTTTTATTGAGCTGGGAAAAGAGAGGAAGACACAGGAATCATCAGGTATTAGGAGGTCT
GACGCCGAGAGAGCTAGGAGGGGAGATACAAAGAGCCAAGAGGGGACAGTGATGACCTTG
AACAGGGCAGGCTTTCTTGAAGAGTGAGCAGAGGTCTCTCTACCGAAAGGTACTGGCAGT
AGGACACGGTTCTGCAAGAATCTATGCTTGTATCGGGGGATGGGTTTCAAGTCTTAGCAA
GTAATGTTATGGGTGAAGTGTAAGCGGTCCATCTTTTCATTGAAATCGTGCAGGGGGAGT
TCTTTGACTCTACTGGCATGGAAGCACCACGGCAGCAATTGCTTATGTTTCAAGGACCTG
GTGGCTTTTTCTTCAAGAAAGTTCCAAGTCAGCTTCTTCTTTGCTGCCCTAGGAGAGGCT
TGGTCAAATCTTATTCCAAAAAGTTTACTGTTTAGTTGTTGCTACTACTAGTTTCTTGCA
TGGTAGTTTTACCAGTAAAAAAAGTCTTCAGATTGTAAACAAAGGCAATTAAACAACTGG
TTTCTTGCAGTGGTAGTTACACCAGTAAAAAATCTTCAGACTGTAAACAAAGGCAATCAA
ACA
■■Homology search results ■■ -
sp_hit_id Q6NRV8
Definition sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=Xenopus laevis
Align length 63
Score (bit) 31.2
E-value 5.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957536|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_K02, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=X...    31   5.1  
sp|Q40424|LCYB_NARPS Lycopene beta cyclase, chloroplastic/chromo...    31   5.1  
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    30   8.7  
sp|P83953|IMA1_RAT Importin subunit alpha-1 OS=Rattus norvegicus...    30   8.7  
sp|Q5R909|IMA1_PONAB Importin subunit alpha-1 OS=Pongo abelii GN...    30   8.7  
sp|Q60960|IMA1_MOUSE Importin subunit alpha-1 OS=Mus musculus GN...    30   8.7  
sp|P52294|IMA1_HUMAN Importin subunit alpha-1 OS=Homo sapiens GN...    30   8.7  
sp|A2VE08|IMA1_BOVIN Importin subunit alpha-1 OS=Bos taurus GN=K...    30   8.7  

>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B
           OS=Xenopus laevis GN=rnf111-B PE=2 SV=1
          Length = 959

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 397 CCRGASMPVESKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSYCQYLSVE 218
           CC G+S          T S  +  A     + +     P P T + SCR   +  Y S+ 
Sbjct: 556 CCPGSSSRSTVYGHQATTSTAQTMAIDGYGSSMVAQAQPPPPTPLSSCRHYMHASYTSLP 615

Query: 217 RPL 209
           RPL
Sbjct: 616 RPL 618


>sp|Q40424|LCYB_NARPS Lycopene beta cyclase,
           chloroplastic/chromoplastic OS=Narcissus pseudonarcissus
           GN=LCY1 PE=2 SV=1
          Length = 503

 Score = 31.2 bits (69), Expect = 5.1
 Identities = 15/29 (51%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
 Frame = -2

Query: 278 PRYKHRFLQNRVLLP--VPFGRETSAHSS 198
           PRY H FL +R+ LP  VPFG    +H+S
Sbjct: 448 PRYWHGFLSSRLFLPELVPFGLSLFSHAS 476


>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia
           OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1
          Length = 954

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 18/63 (28%), Positives = 25/63 (39%)
 Frame = -3

Query: 397 CCRGASMPVESKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSYCQYLSVE 218
           CC G+S          T S  +  A     + +     P P T + SCR   +  Y S+ 
Sbjct: 566 CCPGSSSRSTVYGHQSTTSTAQTMAIDGYGSSMVAQAQPPPPTPLSSCRHYMHAPYTSLT 625

Query: 217 RPL 209
           RPL
Sbjct: 626 RPL 628


>sp|P83953|IMA1_RAT Importin subunit alpha-1 OS=Rattus norvegicus
           GN=Kpna1 PE=2 SV=1
          Length = 538

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 ISNCCRGASMPVE-SKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSY 239
           +SN CRG S P E +K SPC +++  W  + S   +LA           D+C  +SY
Sbjct: 236 LSNLCRGKSPPPEFAKVSPC-LNVLSWLLFVSDTDVLA-----------DACWALSY 280


>sp|Q5R909|IMA1_PONAB Importin subunit alpha-1 OS=Pongo abelii
           GN=KPNA1 PE=2 SV=1
          Length = 538

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 ISNCCRGASMPVE-SKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSY 239
           +SN CRG S P E +K SPC +++  W  + S   +LA           D+C  +SY
Sbjct: 236 LSNLCRGKSPPPEFAKVSPC-LNVLSWLLFVSDTDVLA-----------DACWALSY 280


>sp|Q60960|IMA1_MOUSE Importin subunit alpha-1 OS=Mus musculus
           GN=Kpna1 PE=1 SV=2
          Length = 538

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 ISNCCRGASMPVE-SKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSY 239
           +SN CRG S P E +K SPC +++  W  + S   +LA           D+C  +SY
Sbjct: 236 LSNLCRGKSPPPEFAKVSPC-LNVLSWLLFVSDTDVLA-----------DACWALSY 280


>sp|P52294|IMA1_HUMAN Importin subunit alpha-1 OS=Homo sapiens
           GN=KPNA1 PE=1 SV=2
          Length = 538

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 ISNCCRGASMPVE-SKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSY 239
           +SN CRG S P E +K SPC +++  W  + S   +LA           D+C  +SY
Sbjct: 236 LSNLCRGKSPPPEFAKVSPC-LNVLSWLLFVSDTDVLA-----------DACWALSY 280


>sp|A2VE08|IMA1_BOVIN Importin subunit alpha-1 OS=Bos taurus
           GN=KPNA1 PE=2 SV=1
          Length = 538

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = -3

Query: 406 ISNCCRGASMPVE-SKNSPCTISMKRWTAYTSPITLLAKT*NPSPDTSIDSCRTVSY 239
           +SN CRG S P E +K SPC +++  W  + S   +LA           D+C  +SY
Sbjct: 236 LSNLCRGKSPPPEFAKVSPC-LNVLSWLLFVSDTDVLA-----------DACWALSY 280
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957536|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_K02, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******