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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957542
Clone id TST39A01NGRL0028_K08
Library
Length 654
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_K08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGAGTATTAGGTCGCCACCGAGCGGTTGTTTAAACTTTTCGCTCGCAATCAGAACGTCG
ACATACAAACTTCATTGATAGTTTTCCAATCCTCCCTTTGGTGGAACAGCCCTTGTACTC
AACATGGCAGGTGCTCTTTGTGTTCTCGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACAG
AGAGCGTGTGTGTATGTGAGAGAAACAGGTTGATTTTGAGTAAATTAGAGAGATATAGAG
AGAAATAACTGCTCTAGTCTTCTGCAGTTCAGCTTGTCCAGTGGTATCTCAATTCTTACC
AAAACCTCAATTGATTTCCCACCTCTCACACATCTATTCTCTCATTGTATATAATTGCAC
ATCTGTATGGGATCCATTTCTCCAGCTGATGCCATGATTCCAATATCTGGCAACGACGAC
CATGGGGCGAAGGACCCGAGCAATGCTCAGAAAGCAGGTGGTTTTGGCCTTCAGACAAAG
GCAAGCAATGGACTAGAGATGGGAGATCGGCGGGACGCAGATCGACATGGTACTTGCATC
GGCCACCTCCGTATTGCGGACATCATGCTGCGCTCTGCTGTGGTTGCTTTCATGGTTGTT
TCGCTAAGCGCAATGTTTACAAGCACACAACGATCAGCGGTGCACATTTTCGGC
■■Homology search results ■■ -
sp_hit_id Q70EK9
Definition sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 OS=Homo sapiens
Align length 89
Score (bit) 32.7
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957542|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_K08, 5'
         (654 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51 O...    33   1.7  
sp|Q01064|PDE1B_HUMAN Calcium/calmodulin-dependent 3',5'-cyclic ...    32   2.2  
sp|Q01066|PDE1B_RAT Calcium/calmodulin-dependent 3',5'-cyclic nu...    32   2.9  
sp|Q01065|PDE1B_MOUSE Calcium/calmodulin-dependent 3',5'-cyclic ...    32   2.9  
sp|Q64395|PDE1B_CRIGR Calcium/calmodulin-dependent 3',5'-cyclic ...    32   2.9  
sp|Q01061|PDE1B_BOVIN Calcium/calmodulin-dependent 3',5'-cyclic ...    32   2.9  
sp|Q5U4C1|GASP1_MOUSE G-protein coupled receptor-associated sort...    32   2.9  
sp|O74634|SYMM_CANAL Methionyl-tRNA synthetase, mitochondrial OS...    27   5.7  
sp|P17888|PRIA_ECOLI Primosomal protein N' OS=Escherichia coli (...    30   8.5  
sp|Q920R4|GASP1_RAT G-protein coupled receptor-associated sortin...    30   8.5  
sp|A7M907|ACCD_CUSGR Acetyl-coenzyme A carboxylase carboxyl tran...    30   8.5  

>sp|Q70EK9|UBP51_HUMAN Ubiquitin carboxyl-terminal hydrolase 51
           OS=Homo sapiens GN=USP51 PE=2 SV=1
          Length = 711

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 14/89 (15%)
 Frame = +3

Query: 423 WGEGPEQCSESRWFWPSDKGKQWTRDGRSAGRRSTWY-----LHRPPPYCGHHAAL---- 575
           +G+GP  CS    F     GK W ++ R   +R  W        R    C  H       
Sbjct: 188 FGQGPTGCSHVESF---KVGKNWQKNLRLIYQRFVWSGTPETRKRKAKSCICHVCSTHMN 244

Query: 576 ----CCGC-FHGCFAKRNVYKHTTISGAH 647
               C  C F GCF +++++KH      H
Sbjct: 245 RLHSCLSCVFFGCFTEKHIHKHAETKQHH 273


>sp|Q01064|PDE1B_HUMAN Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Homo sapiens GN=PDE1B
           PE=1 SV=2
          Length = 536

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 6/78 (7%)
 Frame = -3

Query: 553 YGGGRCKYHVDLRPADLPSLVHCLPLSEGQNHLLSE------HCSGPSPHGRRCQILESW 392
           YG  +  YH  +  AD+   VHC  L  G  H LSE        +             S+
Sbjct: 215 YGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSEIELLAIIFAAAIHDYEHTGTTNSF 274

Query: 391 HQLEKWIPYRCAIIYNER 338
           H   K     CAI+YN+R
Sbjct: 275 HIQTK---SECAIVYNDR 289


>sp|Q01066|PDE1B_RAT Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Rattus norvegicus
           GN=Pde1b PE=2 SV=1
          Length = 535

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 553 YGGGRCKYHVDLRPADLPSLVHCLPLSEGQNHLLSE 446
           YG  +  YH  +  AD+   VHC  L  G  H LSE
Sbjct: 214 YGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSE 249


>sp|Q01065|PDE1B_MOUSE Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Mus musculus GN=Pde1b
           PE=1 SV=2
          Length = 535

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 553 YGGGRCKYHVDLRPADLPSLVHCLPLSEGQNHLLSE 446
           YG  +  YH  +  AD+   VHC  L  G  H LSE
Sbjct: 214 YGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSE 249


>sp|Q64395|PDE1B_CRIGR Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B (Fragment) OS=Cricetulus
           griseus GN=PDE1B1 PE=2 SV=1
          Length = 199

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 553 YGGGRCKYHVDLRPADLPSLVHCLPLSEGQNHLLSE 446
           YG  +  YH  +  AD+   VHC  L  G  H LSE
Sbjct: 23  YGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSE 58


>sp|Q01061|PDE1B_BOVIN Calcium/calmodulin-dependent 3',5'-cyclic
           nucleotide phosphodiesterase 1B OS=Bos taurus GN=PDE1B
           PE=1 SV=1
          Length = 534

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 553 YGGGRCKYHVDLRPADLPSLVHCLPLSEGQNHLLSE 446
           YG  +  YH  +  AD+   VHC  L  G  H LSE
Sbjct: 213 YGKYKNPYHNQIHAADVTQTVHCFLLRTGMVHCLSE 248


>sp|Q5U4C1|GASP1_MOUSE G-protein coupled receptor-associated sorting
           protein 1 OS=Mus musculus GN=Gprasp1 PE=2 SV=1
          Length = 1347

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 429 EGPEQCSESRWFWPSDKGKQWTRDGRSAGRRSTWY 533
           +  ++  ++ WFWP DK K W++       RS W+
Sbjct: 250 DSEDESGKTPWFWPKDKTKVWSKPKEEPNSRS-WF 283


>sp|O74634|SYMM_CANAL Methionyl-tRNA synthetase, mitochondrial
           OS=Candida albicans GN=MSM1 PE=3 SV=1
          Length = 577

 Score = 26.6 bits (57), Expect(2) = 5.7
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 376 ISPADAMIPISGNDDHGAKDPSNAQKAG 459
           ++P+     ++G D+HG K  S A+K G
Sbjct: 53  LNPSKESFMLTGTDEHGLKIQSTAEKLG 80



 Score = 22.7 bits (47), Expect(2) = 5.7
 Identities = 5/18 (27%), Positives = 13/18 (72%)
 Frame = +2

Query: 320 HLSHIYSLIVYNCTSVWD 373
           H+ H+YS+++ +  + W+
Sbjct: 34  HIGHLYSMLIADTRNKWE 51


>sp|P17888|PRIA_ECOLI Primosomal protein N' OS=Escherichia coli
           (strain K12) GN=priA PE=1 SV=2
          Length = 732

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -3

Query: 511 ADLPSLVHCLPLSEGQNHLLSEHCSGPSPHGRRCQILESWH 389
           A+ P   H   L + Q+HL   HC    P  R+C    S H
Sbjct: 443 AECPRCDHYYTLHQAQHHLRCHHCDSQRPVPRQCPSCGSTH 483


>sp|Q920R4|GASP1_RAT G-protein coupled receptor-associated sorting
           protein 1 OS=Rattus norvegicus GN=Gprasp1 PE=1 SV=1
          Length = 1346

 Score = 30.4 bits (67), Expect = 8.5
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 429 EGPEQCSESRWFWPSDKGKQWTRDGRSAGRRSTWY 533
           +  ++ +++ WFW  DK K W+R       RS W+
Sbjct: 250 DSEDESAKTPWFWAKDKPKVWSRPKEEPNTRS-WF 283
tr_hit_id B3L8A9
Definition tr|B3L8A9|B3L8A9_PLAKH Putative uncharacterized protein OS=Plasmodium knowlesi (strain H)
Align length 87
Score (bit) 34.7
E-value 5.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957542|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_K08, 5'
         (654 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3L8A9|B3L8A9_PLAKH Putative uncharacterized protein OS=Plasm...    35   5.3  
tr|Q6U7I5|Q6U7I5_DANRE Neural adhesion molecule L1.1 OS=Danio re...    34   6.9  
tr|A4JYG6|A4JYG6_DANRE Nadl1.1 (Fragment) OS=Danio rerio GN=nadl...    34   6.9  

>tr|B3L8A9|B3L8A9_PLAKH Putative uncharacterized protein OS=Plasmodium
            knowlesi (strain H) GN=PKH_120550 PE=4 SV=1
          Length = 3394

 Score = 34.7 bits (78), Expect = 5.3
 Identities = 20/87 (22%), Positives = 38/87 (43%)
 Frame = +1

Query: 358  HICMGSISPADAMIPISGNDDHGAKDPSNAQKAGGFGLQTKASNGLEMGDRRDADRHGTC 537
            H+ +G +   +       N     K+P N +KAGG    TK        ++ D D     
Sbjct: 2379 HVWLGDVEEVNRAYVKGAN----GKNPPNGEKAGGSNQYTKKKQQKVHHEKSDHDNQTKS 2434

Query: 538  IGHLRIADIMLRSAVVAFMVVSLSAMF 618
            + +++++DI  R  + +  ++ L  MF
Sbjct: 2435 VKYIKLSDIAKRVQIYSQGILYLEFMF 2461


>tr|Q6U7I5|Q6U7I5_DANRE Neural adhesion molecule L1.1 OS=Danio rerio
           GN=nadl1.1 PE=2 SV=1
          Length = 1269

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
 Frame = +1

Query: 220 VN*RDIERNNCS-SLLQFSLSSGISILTKTSIDFPPLTHLFSHCI*LHICMGSISPADAM 396
           V+  D  R  CS S    S+S+ + +L +T I  PP          LH+  GS    DA+
Sbjct: 492 VSEEDSNRYTCSVSETNKSISAELEVLNRTKIVGPPQN--------LHVIRGS----DAI 539

Query: 397 IPISGNDDHGAKDPSNAQKAGGFGLQTKASNGLEMGDRRDADRHGTCIGHLRIADIML 570
           +      DH  K P+   K  G  +    SN          D++    G L++ D+ +
Sbjct: 540 LHCKYTVDHNLKSPTVQWKKDGHKITASTSN----------DKYHEIEGSLKVLDVQM 587


>tr|A4JYG6|A4JYG6_DANRE Nadl1.1 (Fragment) OS=Danio rerio GN=nadl1.1
           PE=2 SV=1
          Length = 1125

 Score = 34.3 bits (77), Expect = 6.9
 Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 1/118 (0%)
 Frame = +1

Query: 220 VN*RDIERNNCS-SLLQFSLSSGISILTKTSIDFPPLTHLFSHCI*LHICMGSISPADAM 396
           V+  D  R  CS S    S+S+ + +L +T I  PP          LH+  GS    DA+
Sbjct: 492 VSEEDSNRYTCSVSETNKSISAELEVLNRTKIVGPPQN--------LHVIRGS----DAI 539

Query: 397 IPISGNDDHGAKDPSNAQKAGGFGLQTKASNGLEMGDRRDADRHGTCIGHLRIADIML 570
           +      DH  K P+   K  G  +    SN          D++    G L++ D+ +
Sbjct: 540 LHCKYTVDHNLKSPTVQWKKDGHKITASTSN----------DKYHEIEGSLKVLDVQM 587