DK957562 |
Clone id |
TST39A01NGRL0028_L05 |
Library |
TST39 |
Length |
413 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_L05. 5' end sequence. |
Accession |
DK957562 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL6Contig1 |
Sequence |
CCAAATTCAAGGGTAACCTGGATGCCTCTGGTCGCAAAGCTAAGGGAAAGGGAGTCTACC AATATACCAAGAAGTATGGTGCTAATGTCGATGGATACAGCCCTATCTATGTCCCAGAGG AATGGTCAACTTCTGGTGATAGCTATGCTGCAGGTCCTACTGGATTGGCTATCTGGGCAG TTACCCTCGGCGCTATCTTGTTGGGTGGTGCCCTCTTAGTGTACAACACCAGTGCCCTTG CTCAATGATTGCTTTTGTATGTTAATGAGGTGAATCCTGAATTCTGACACACTATGCGTC TTCCATGTCTCACCTATTGCCTTGTATATTCTGACAGTCATGAGAATGAAAAAGTGTAGC TCCTTGTGAATTGCAATTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P06183 |
Definition |
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum |
Align length |
79 |
Score (bit) |
108.0 |
E-value |
8.0e-24 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957562|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_L05, 5' (379 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloropl... 108 8e-24 sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloropl... 108 8e-24 sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloropl... 107 1e-23 sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloropl... 104 2e-22 sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloropl... 103 2e-22 sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloropl... 103 3e-22 sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloropl... 102 4e-22 sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewa... 31 1.7 sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu... 30 4.8 sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal tr... 30 4.8 sp|Q9WU01|KHDR2_MOUSE KH domain-containing, RNA-binding, signal ... 30 4.8 sp|Q6AXP3|CO033_RAT Uncharacterized protein C15orf33 homolog OS=... 29 8.3
>sp|P06183|PSBR_SOLTU Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1 Length = 138
Score = 108 bits (270), Expect = 8e-24 Identities = 53/79 (67%), Positives = 56/79 (70%) Frame = +3
Query: 9 KGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTX 188 + +DASGRK KGKGVYQY KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 60 RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
Query: 189 XXXXXXXXXXVYNTSALAQ 245 VYNTSALAQ Sbjct: 120 VGILAGGALLVYNTSALAQ 138
>sp|Q40163|PSBR_SOLLC Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1 Length = 138
Score = 108 bits (270), Expect = 8e-24 Identities = 53/79 (67%), Positives = 56/79 (70%) Frame = +3
Query: 9 KGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTX 188 + +DASGRK KGKGVYQY KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 60 RDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTL 119
Query: 189 XXXXXXXXXXVYNTSALAQ 245 VYNTSALAQ Sbjct: 120 LGILAGGALLVYNTSALAQ 138
>sp|Q40070|PSBR_HORVU Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1 Length = 138
Score = 107 bits (268), Expect = 1e-23 Identities = 52/79 (65%), Positives = 56/79 (70%) Frame = +3
Query: 6 FKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVT 185 FK +DASGR AKGKGVYQ+ KYGANVDGYSPIY PEEWS SGD Y G TGL +WAVT Sbjct: 59 FKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVT 118
Query: 186 XXXXXXXXXXXVYNTSALA 242 VY+TSALA Sbjct: 119 LAGILLGGALLVYSTSALA 137
>sp|Q40519|PSBR_TOBAC Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1 Length = 136
Score = 104 bits (259), Expect = 2e-22 Identities = 50/79 (63%), Positives = 56/79 (70%) Frame = +3
Query: 9 KGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTX 188 + +DASGRK KGKGVYQ+ KYGANVDGYSPIY ++WS SGD Y G TGLAIWAVT Sbjct: 58 RDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTL 117
Query: 189 XXXXXXXXXXVYNTSALAQ 245 V+NTSALAQ Sbjct: 118 VGILAGGALLVFNTSALAQ 136
>sp|P10690|PSBR_SPIOL Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1 Length = 140
Score = 103 bits (258), Expect = 2e-22 Identities = 50/81 (61%), Positives = 56/81 (69%) Frame = +3
Query: 3 KFKGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAV 182 K + +D+SGRK GKGVYQ+ KYGANVDGYSPIY EEW+ +GD YA G TGL IWAV Sbjct: 60 KLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAV 119
Query: 183 TXXXXXXXXXXXVYNTSALAQ 245 T VYNTSALAQ Sbjct: 120 TLAGLLAGGALLVYNTSALAQ 140
>sp|P27202|PSBR_ARATH Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1 Length = 140
Score = 103 bits (257), Expect = 3e-22 Identities = 51/79 (64%), Positives = 54/79 (68%) Frame = +3
Query: 9 KGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTX 188 + +DASGRK KG GVY+Y KYGANVDGYSPIY EWS SGD Y G TGLAIWAVT Sbjct: 62 RDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTL 121
Query: 189 XXXXXXXXXXVYNTSALAQ 245 VYNTSALAQ Sbjct: 122 AGILAGGALLVYNTSALAQ 140
>sp|P49108|PSBR_BRACM Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1 Length = 141
Score = 102 bits (255), Expect = 4e-22 Identities = 50/79 (63%), Positives = 55/79 (69%) Frame = +3
Query: 9 KGNLDASGRKAKGKGVYQYTKKYGANVDGYSPIYVPEEWSTSGDSYAAGPTGLAIWAVTX 188 + +DASGRK KG GVY++ KYGANVDGYSPIY +EWS SGD Y G TGLAIWAVT Sbjct: 63 RDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTL 122
Query: 189 XXXXXXXXXXVYNTSALAQ 245 VYNTSALAQ Sbjct: 123 AGILAGGALLVYNTSALAQ 141
>sp|Q12NC2|THIC_SHEDO Thiamine biosynthesis protein thiC OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=thiC PE=3 SV=1 Length = 686
Score = 31.2 bits (69), Expect = 1.7 Identities = 14/30 (46%), Positives = 19/30 (63%) Frame = -2
Query: 369 SQGATLFHSHDCQNIQGNR*DMEDA*CVRI 280 SQG+ L+HS D I N+ D +DA VR+ Sbjct: 650 SQGSALYHSIDSSGINDNKNDQQDASVVRV 679
>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus GN=Tcf7l1 PE=1 SV=2 Length = 584
Score = 29.6 bits (65), Expect = 4.8 Identities = 13/32 (40%), Positives = 19/32 (59%) Frame = -1
Query: 166 NPVGPAA*LSPEVDHSSGT*IGLYPSTLAPYF 71 +P P LSPE+D +G +PS L+PY+ Sbjct: 200 SPASPPTHLSPEIDPKTGIPRPPHPSELSPYY 231
>sp|Q920F3|KHDR2_RAT KH domain-containing, RNA-binding, signal transduction-associated protein 2 OS=Rattus norvegicus GN=Khdrbs2 PE=1 SV=1 Length = 349
Score = 29.6 bits (65), Expect = 4.8 Identities = 14/32 (43%), Positives = 17/32 (53%) Frame = +3
Query: 63 YTKKYGANVDGYSPIYVPEEWSTSGDSYAAGP 158 Y +G N D Y Y PEEW+T+ S A P Sbjct: 303 YDYGHGVNEDAYDS-YAPEEWTTTRSSLKAPP 333
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A4ZGB4 |
Definition |
tr|A4ZGB4|A4ZGB4_AGATE Chloroplast photosystem II 10 kDa protein OS=Agave tequilana |
Align length |
79 |
Score (bit) |
111.0 |
E-value |
2.0e-23 |
Report |
|