DK957565 |
Clone id |
TST39A01NGRL0028_L08 |
Library |
TST39 |
Length |
428 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_L08. 5' end sequence. |
Accession |
DK957565 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL148Contig1 |
Sequence |
GGTTGCTGCCCTGTCTCTTGGACTGAACTATCCCACTCTTGCCGCTGCTCCACATATGTT TGCTAATGCCTTCAAGAATGTTGTGGCTGTTGCCCTCGAGATTGAGTACTCTTTCCCGGA GGCAGACAAGATTAAGGAATACTTGAAGGATCCTAGTAAGTTTGCTGTTGCAGCTGCTCC TGCAGCATCTGCCTCTGATACTCCTGCTCCTGCGGCAGCAGTGGAGGAAGAGAAAGCAGA ACCTGAGGAAGCGTCGGATGATGACATGGGTTTCAGTTTGTTTGATTAGGGTTAGGTGTA CTAGCTTAGCAACTTTGGAATGTAAAGCACAAATTCCAGTTTTGACATATGCGACAAGAT CAAACTTGGAACTATATCAATGTTTTGCACTGAAAGTTATTCTGAAAAAAAAAAAAAAAA AAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P50346 |
Definition |
sp|P50346|RLA0_SOYBN 60S acidic ribosomal protein P0 OS=Glycine max |
Align length |
96 |
Score (bit) |
77.0 |
E-value |
3.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RZU5 |
Definition |
tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0 OS=Physcomitrella patens subsp. patens |
Align length |
95 |
Score (bit) |
77.0 |
E-value |
4.0e-13 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957565|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_L08, 5' (404 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0 OS=Physco... 77 4e-13 tr|A7Q3E0|A7Q3E0_VITVI 60S acidic ribosomal protein P0 OS=Vitis ... 75 2e-12 tr|A5B5R1|A5B5R1_VITVI 60S acidic ribosomal protein P0 OS=Vitis ... 75 2e-12 tr|Q0J878|Q0J878_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza ... 74 5e-12 tr|B8BAG5|B8BAG5_ORYSI Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A6N1T9|A6N1T9_ORYSI 60S acidic ribosomal protein P0 OS=Oryza ... 74 5e-12 tr|A3BPC1|A3BPC1_ORYSJ Putative uncharacterized protein OS=Oryza... 74 5e-12 tr|A5AXI6|A5AXI6_VITVI 60S acidic ribosomal protein P0 OS=Vitis ... 73 6e-12 tr|A9S0Q1|A9S0Q1_PHYPA 60S acidic ribosomal protein P0 OS=Physco... 73 8e-12 tr|B7ZX06|B7ZX06_MAIZE Putative uncharacterized protein OS=Zea m... 72 1e-11 tr|B4FWI0|B4FWI0_MAIZE Putative uncharacterized protein OS=Zea m... 72 1e-11 tr|A7PI79|A7PI79_VITVI 60S acidic ribosomal protein P0 OS=Vitis ... 72 1e-11 tr|B4FNM4|B4FNM4_MAIZE Putative uncharacterized protein OS=Zea m... 72 2e-11 tr|Q307Z8|Q307Z8_SOLTU 60S acidic ribosomal protein P0 OS=Solanu... 70 4e-11 tr|A9PF35|A9PF35_POPTR 60S acidic ribosomal protein P0 OS=Populu... 70 5e-11 tr|Q2PES6|Q2PES6_TRIPR 60S acidic ribosomal protein P0 OS=Trifol... 69 9e-11 tr|B7FJF1|B7FJF1_MEDTR Putative uncharacterized protein OS=Medic... 69 9e-11 tr|Q2RAW0|Q2RAW0_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza ... 69 1e-10 tr|Q2QY46|Q2QY46_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza ... 69 1e-10 tr|A2ZHU8|A2ZHU8_ORYSI 60S acidic ribosomal protein P0 OS=Oryza ... 69 1e-10 tr|A2ZB54|A2ZB54_ORYSI 60S acidic ribosomal protein P0 OS=Oryza ... 69 1e-10 tr|Q9M5M5|Q9M5M5_EUPES 60S acidic ribosomal protein P0 (Fragment... 69 2e-10 tr|A9PH48|A9PH48_POPTR 60S acidic ribosomal protein P0 OS=Populu... 68 3e-10 tr|B3TLL9|B3TLL9_ELAGV Ribosomal protein L10 OS=Elaeis guineensi... 67 6e-10 tr|A8J5Z0|A8J5Z0_CHLRE 60S acidic ribosomal protein P0 OS=Chlamy... 65 2e-09 tr|A8MQR4|A8MQR4_ARATH 60S acidic ribosomal protein P0 OS=Arabid... 64 4e-09 tr|Q70YZ3|Q70YZ3_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx... 61 2e-08 tr|Q5UAU1|Q5UAU1_BOMMO 60S acidic ribosomal protein P0 OS=Bombyx... 61 2e-08 tr|A7NYI7|A7NYI7_VITVI Chromosome chr6 scaffold_3, whole genome ... 60 5e-08 tr|A5BHB1|A5BHB1_VITVI 60S acidic ribosomal protein P0 OS=Vitis ... 60 5e-08
>tr|A9RZU5|A9RZU5_PHYPA 60S acidic ribosomal protein P0 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_179848 PE=3 SV=1 Length = 319
Score = 77.0 bits (188), Expect = 4e-13 Identities = 44/95 (46%), Positives = 47/95 (49%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VAA+SL LNYPTLAA PH +E EYSFP A+K KEYLKDPSKF Sbjct: 225 VAAVSLALNYPTLAAVPHSFVNSYKNLLAIAVETEYSFPLAEKTKEYLKDPSKFAVAAAP 284
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SDDDMGFSLFD Sbjct: 285 AATESSSAPAAAAKEEEKVEEKEESDDDMGFSLFD 319
>tr|A7Q3E0|A7Q3E0_VITVI 60S acidic ribosomal protein P0 OS=Vitis vinifera GN=GSVIVT00029254001 PE=3 SV=1 Length = 320
Score = 74.7 bits (182), Expect = 2e-12 Identities = 43/96 (44%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKF-XXXXX 178 V +LSL ++YPTLAAAPHM + EYSFP+ADK+KEYLKDPSKF Sbjct: 225 VTSLSLAISYPTLAAAPHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKFAVATAP 284
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SDDDMGFSLFD Sbjct: 285 VTASDAGAAPAASKEEEKKEEPQEESDDDMGFSLFD 320
>tr|A5B5R1|A5B5R1_VITVI 60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VITISV_030042 PE=3 SV=1 Length = 303
Score = 74.7 bits (182), Expect = 2e-12 Identities = 43/96 (44%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKF-XXXXX 178 V +LSL ++YPTLAAAPHM + EYSFP+ADK+KEYLKDPSKF Sbjct: 208 VTSLSLAISYPTLAAAPHMFINAYKNVLAVAVATEYSFPQADKVKEYLKDPSKFAVATAP 267
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SDDDMGFSLFD Sbjct: 268 VTASDAGAAPAASKEEEKKEEPQEESDDDMGFSLFD 303
>tr|Q0J878|Q0J878_ORYSJ 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=2 SV=1 Length = 319
Score = 73.6 bits (179), Expect = 5e-12 Identities = 40/95 (42%), Positives = 48/95 (50%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VA++SL ++YPT+AAAPHM +E EYS+P ADKIKEYLKDPSKF Sbjct: 225 VASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPV 284
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SD D+G SLFD Sbjct: 285 AADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 319
>tr|B8BAG5|B8BAG5_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_27702 PE=4 SV=1 Length = 216
Score = 73.6 bits (179), Expect = 5e-12 Identities = 40/95 (42%), Positives = 48/95 (50%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VA++SL ++YPT+AAAPHM +E EYS+P ADKIKEYLKDPSKF Sbjct: 122 VASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPV 181
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SD D+G SLFD Sbjct: 182 AADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 216
>tr|A6N1T9|A6N1T9_ORYSI 60S acidic ribosomal protein P0 OS=Oryza sativa subsp. indica PE=2 SV=1 Length = 238
Score = 73.6 bits (179), Expect = 5e-12 Identities = 40/95 (42%), Positives = 48/95 (50%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VA++SL ++YPT+AAAPHM +E EYS+P ADKIKEYLKDPSKF Sbjct: 144 VASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPV 203
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SD D+G SLFD Sbjct: 204 AADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 238
>tr|A3BPC1|A3BPC1_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_024893 PE=4 SV=1 Length = 235
Score = 73.6 bits (179), Expect = 5e-12 Identities = 40/95 (42%), Positives = 48/95 (50%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VA++SL ++YPT+AAAPHM +E EYS+P ADKIKEYLKDPSKF Sbjct: 141 VASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPV 200
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SD D+G SLFD Sbjct: 201 AADSGAAAPSAAKEEEKKEEPEEESDGDLGMSLFD 235
>tr|A5AXI6|A5AXI6_VITVI 60S acidic ribosomal protein P0 OS=Vitis vinifera GN=VITISV_003812 PE=3 SV=1 Length = 320
Score = 73.2 bits (178), Expect = 6e-12 Identities = 42/96 (43%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKF-XXXXX 178 V +LSL ++YPTLAAAPHM + EYSFP+ADK+KE+LKDPSKF Sbjct: 225 VTSLSLAISYPTLAAAPHMFVNAYKNVLSVAVATEYSFPQADKVKEFLKDPSKFAVAVAP 284
Query: 179 XXXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SDDDMGFSLFD Sbjct: 285 VAAADAGGSAAPPKEEEKKEEPAEESDDDMGFSLFD 320
>tr|A9S0Q1|A9S0Q1_PHYPA 60S acidic ribosomal protein P0 OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_180102 PE=3 SV=1 Length = 318
Score = 72.8 bits (177), Expect = 8e-12 Identities = 44/95 (46%), Positives = 47/95 (49%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VAA+SL LNYPTLAA PH +E EYSFP A+K KEYLKDPSKF Sbjct: 225 VAAVSLALNYPTLAAVPHSFVNAYKNLLAIAVETEYSFPLAEKTKEYLKDPSKF-AAATA 283
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SDDDMGFSLFD Sbjct: 284 PVAAESAAPAAAAKEEEKPEEKEESDDDMGFSLFD 318
>tr|B7ZX06|B7ZX06_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 319
Score = 72.4 bits (176), Expect = 1e-11 Identities = 42/95 (44%), Positives = 49/95 (51%) Frame = +2
Query: 2 VAALSLGLNYPTLAAAPHMXXXXXXXXXXXXLEIEYSFPEADKIKEYLKDPSKFXXXXXX 181 VA+LSL L+YPTLAA PHM +E +YS+P ADKIKEYLKDPSKF Sbjct: 225 VASLSLALSYPTLAAVPHMFINGYKNVLAVAVETDYSYPHADKIKEYLKDPSKF-AVAAP 283
Query: 182 XXXXXXXXXXXXXXXXXXXXXXXXSDDDMGFSLFD 286 SD++MGFSLFD Sbjct: 284 AAAADSSAAAAPKEEEKAPEPAEESDEEMGFSLFD 318
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