DK957604
Clone id TST39A01NGRL0028_M23
Library
Length 251
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_M23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
GGAAGTGGTGGATATGCTTACCGATGATCTCTATATACTACGTTATAGGCCTGTCAAAAG
GCTGCTTGAAACAGACAGGATTGAGCTTGTTTAAAGCTCTTTTATAAATAGTGGGGATCA
AGTTCTCAGGGAGCTTGCTAGTCTGTCGATATGGCTACGTACACACAGACATATACATTG
TAGCTTCGATTGACATTAATGCAAATGTTTCGCGTTCTCTTTCACTAGAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6FT85
Definition sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 OS=Candida glabrata
Align length 30
Score (bit) 31.6
E-value 1.3
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M23, 5'
(228 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 O... 32 1.3
sp|P45280|Y1629_HAEIN Uncharacterized membrane protein HI1629 OS... 30 3.8
sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 O... 29 8.5
sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5 O... 29 8.5

>sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5
OS=Candida glabrata GN=SLD5 PE=3 SV=1
Length = 309

Score = 31.6 bits (70), Expect = 1.3
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
E+V++ T +Y++RY VK LL ++EL+
Sbjct: 280 EIVELTTGSIYVMRYDIVKDLLRDGKVELI 309


>sp|P45280|Y1629_HAEIN Uncharacterized membrane protein HI1629
OS=Haemophilus influenzae GN=HI1629 PE=3 SV=1
Length = 212

Score = 30.0 bits (66), Expect = 3.8
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +2

Query: 35 ILRYRPVKRLLETDRIELV*SSFINSGDQVL 127
ILR+RP++R++ R+ +V F G++VL
Sbjct: 97 ILRFRPIRRIVTLQRLRMVREKFSQYGNRVL 127


>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5
OS=Dictyostelium discoideum GN=gins4 PE=3 SV=2
Length = 211

Score = 28.9 bits (63), Expect = 8.5
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
E +D +Y L+Y P+K L+E +++L+
Sbjct: 182 ETIDFKKTSIYFLKYLPIKSLVEGGKMDLI 211


>sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5
OS=Ashbya gossypii GN=SLD5 PE=3 SV=1
Length = 266

Score = 28.9 bits (63), Expect = 8.5
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD+ +YI+RY +K LL ++ L+
Sbjct: 237 EVVDLAVGGIYIMRYNVIKDLLMDGKVVLI 266


tr_hit_id A9SRN0
Definition tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 45.1
E-value 0.002
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M23, 5'
(228 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|B6U3S0|B6U3S0_MAIZE SLD5 OS=Zea mays PE=2 SV=1 42 0.012
tr|Q0DKU3|Q0DKU3_ORYSJ Os05g0143400 protein OS=Oryza sativa subs... 41 0.026
tr|A5B391|A5B391_VITVI Putative uncharacterized protein OS=Vitis... 41 0.026
tr|A3AZV3|A3AZV3_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.026
tr|A2Y0A8|A2Y0A8_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026
tr|A5AFG4|A5AFG4_VITVI Putative uncharacterized protein OS=Vitis... 40 0.058
tr|Q6NQP5|Q6NQP5_ARATH At5g49010 (Putative uncharacterized prote... 33 5.5

>tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_232587 PE=4 SV=1
Length = 227

Score = 45.1 bits (105), Expect = 0.002
Identities = 21/30 (70%), Positives = 25/30 (83%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
E VD++ +DLYILRYRPV+ LL TD IELV
Sbjct: 198 ETVDLMPNDLYILRYRPVRGLLGTDSIELV 227


>tr|B6U3S0|B6U3S0_MAIZE SLD5 OS=Zea mays PE=2 SV=1
Length = 219

Score = 42.4 bits (98), Expect = 0.012
Identities = 18/30 (60%), Positives = 25/30 (83%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD++ DDLY+LRY+ VK L+E RI+L+
Sbjct: 190 EVVDLVADDLYVLRYKSVKGLIEGGRIDLI 219


>tr|Q0DKU3|Q0DKU3_ORYSJ Os05g0143400 protein OS=Oryza sativa subsp.
japonica GN=Os05g0143400 PE=4 SV=1
Length = 228

Score = 41.2 bits (95), Expect = 0.026
Identities = 16/30 (53%), Positives = 26/30 (86%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 199 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 228


>tr|A5B391|A5B391_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_037819 PE=4 SV=1
Length = 304

Score = 41.2 bits (95), Expect = 0.026
Identities = 19/30 (63%), Positives = 24/30 (80%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD+ DDLYILRY VK L+E+ +I+LV
Sbjct: 275 EVVDLXADDLYILRYNSVKPLIESGQIDLV 304


>tr|A3AZV3|A3AZV3_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_016325 PE=4 SV=1
Length = 179

Score = 41.2 bits (95), Expect = 0.026
Identities = 16/30 (53%), Positives = 26/30 (86%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 150 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 179


>tr|A2Y0A8|A2Y0A8_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_18422 PE=4 SV=1
Length = 179

Score = 41.2 bits (95), Expect = 0.026
Identities = 16/30 (53%), Positives = 26/30 (86%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 150 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 179


>tr|A5AFG4|A5AFG4_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_038867 PE=4 SV=1
Length = 161

Score = 40.0 bits (92), Expect = 0.058
Identities = 18/30 (60%), Positives = 24/30 (80%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
EVVD++ DDLYILRY V L+E+ +I+LV
Sbjct: 132 EVVDLVADDLYILRYNSVNPLIESGQIDLV 161


>tr|Q6NQP5|Q6NQP5_ARATH At5g49010 (Putative uncharacterized protein
At5g49010) OS=Arabidopsis thaliana GN=At5g49010 PE=2
SV=1
Length = 220

Score = 33.5 bits (75), Expect = 5.5
Identities = 14/30 (46%), Positives = 22/30 (73%)
Frame = +2

Query: 2 EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
E V+M DLY +RY+ VKR +E+ +I+L+
Sbjct: 191 ETVEMERGDLYFIRYKIVKRAIESGQIDLI 220