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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957604
Clone id TST39A01NGRL0028_M23
Library
Length 251
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_M23. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGAAGTGGTGGATATGCTTACCGATGATCTCTATATACTACGTTATAGGCCTGTCAAAAG
GCTGCTTGAAACAGACAGGATTGAGCTTGTTTAAAGCTCTTTTATAAATAGTGGGGATCA
AGTTCTCAGGGAGCTTGCTAGTCTGTCGATATGGCTACGTACACACAGACATATACATTG
TAGCTTCGATTGACATTAATGCAAATGTTTCGCGTTCTCTTTCACTAGAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6FT85
Definition sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 OS=Candida glabrata
Align length 30
Score (bit) 31.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M23, 5'
         (228 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5 O...    32   1.3  
sp|P45280|Y1629_HAEIN Uncharacterized membrane protein HI1629 OS...    30   3.8  
sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5 O...    29   8.5  
sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5 O...    29   8.5  

>sp|Q6FT85|SLD5_CANGA DNA replication complex GINS protein SLD5
           OS=Candida glabrata GN=SLD5 PE=3 SV=1
          Length = 309

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           E+V++ T  +Y++RY  VK LL   ++EL+
Sbjct: 280 EIVELTTGSIYVMRYDIVKDLLRDGKVELI 309


>sp|P45280|Y1629_HAEIN Uncharacterized membrane protein HI1629
           OS=Haemophilus influenzae GN=HI1629 PE=3 SV=1
          Length = 212

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +2

Query: 35  ILRYRPVKRLLETDRIELV*SSFINSGDQVL 127
           ILR+RP++R++   R+ +V   F   G++VL
Sbjct: 97  ILRFRPIRRIVTLQRLRMVREKFSQYGNRVL 127


>sp|Q55EA2|SLD5_DICDI DNA replication complex GINS protein SLD5
           OS=Dictyostelium discoideum GN=gins4 PE=3 SV=2
          Length = 211

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           E +D     +Y L+Y P+K L+E  +++L+
Sbjct: 182 ETIDFKKTSIYFLKYLPIKSLVEGGKMDLI 211


>sp|Q753I0|SLD5_ASHGO DNA replication complex GINS protein SLD5
           OS=Ashbya gossypii GN=SLD5 PE=3 SV=1
          Length = 266

 Score = 28.9 bits (63), Expect = 8.5
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD+    +YI+RY  +K LL   ++ L+
Sbjct: 237 EVVDLAVGGIYIMRYNVIKDLLMDGKVVLI 266
tr_hit_id A9SRN0
Definition tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 30
Score (bit) 45.1
E-value 0.002
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957604|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M23, 5'
         (228 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella paten...    45   0.002
tr|B6U3S0|B6U3S0_MAIZE SLD5 OS=Zea mays PE=2 SV=1                      42   0.012
tr|Q0DKU3|Q0DKU3_ORYSJ Os05g0143400 protein OS=Oryza sativa subs...    41   0.026
tr|A5B391|A5B391_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|A3AZV3|A3AZV3_ORYSJ Putative uncharacterized protein OS=Oryza...    41   0.026
tr|A2Y0A8|A2Y0A8_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.026
tr|A5AFG4|A5AFG4_VITVI Putative uncharacterized protein OS=Vitis...    40   0.058
tr|Q6NQP5|Q6NQP5_ARATH At5g49010 (Putative uncharacterized prote...    33   5.5  

>tr|A9SRN0|A9SRN0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_232587 PE=4 SV=1
          Length = 227

 Score = 45.1 bits (105), Expect = 0.002
 Identities = 21/30 (70%), Positives = 25/30 (83%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           E VD++ +DLYILRYRPV+ LL TD IELV
Sbjct: 198 ETVDLMPNDLYILRYRPVRGLLGTDSIELV 227


>tr|B6U3S0|B6U3S0_MAIZE SLD5 OS=Zea mays PE=2 SV=1
          Length = 219

 Score = 42.4 bits (98), Expect = 0.012
 Identities = 18/30 (60%), Positives = 25/30 (83%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD++ DDLY+LRY+ VK L+E  RI+L+
Sbjct: 190 EVVDLVADDLYVLRYKSVKGLIEGGRIDLI 219


>tr|Q0DKU3|Q0DKU3_ORYSJ Os05g0143400 protein OS=Oryza sativa subsp.
           japonica GN=Os05g0143400 PE=4 SV=1
          Length = 228

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/30 (53%), Positives = 26/30 (86%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 199 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 228


>tr|A5B391|A5B391_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_037819 PE=4 SV=1
          Length = 304

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 19/30 (63%), Positives = 24/30 (80%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD+  DDLYILRY  VK L+E+ +I+LV
Sbjct: 275 EVVDLXADDLYILRYNSVKPLIESGQIDLV 304


>tr|A3AZV3|A3AZV3_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_016325 PE=4 SV=1
          Length = 179

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/30 (53%), Positives = 26/30 (86%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 150 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 179


>tr|A2Y0A8|A2Y0A8_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_18422 PE=4 SV=1
          Length = 179

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 16/30 (53%), Positives = 26/30 (86%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD++ DDLY+LRY+ +K L+E+ +I+L+
Sbjct: 150 EVVDLVADDLYVLRYKSIKGLVESGQIDLI 179


>tr|A5AFG4|A5AFG4_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_038867 PE=4 SV=1
          Length = 161

 Score = 40.0 bits (92), Expect = 0.058
 Identities = 18/30 (60%), Positives = 24/30 (80%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           EVVD++ DDLYILRY  V  L+E+ +I+LV
Sbjct: 132 EVVDLVADDLYILRYNSVNPLIESGQIDLV 161


>tr|Q6NQP5|Q6NQP5_ARATH At5g49010 (Putative uncharacterized protein
           At5g49010) OS=Arabidopsis thaliana GN=At5g49010 PE=2
           SV=1
          Length = 220

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 14/30 (46%), Positives = 22/30 (73%)
 Frame = +2

Query: 2   EVVDMLTDDLYILRYRPVKRLLETDRIELV 91
           E V+M   DLY +RY+ VKR +E+ +I+L+
Sbjct: 191 ETVEMERGDLYFIRYKIVKRAIESGQIDLI 220