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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957605
Clone id TST39A01NGRL0028_M24
Library
Length 635
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_M24. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CATCTTCATCGTCAGCGGCAGGATCAGAGAAGAAGGGCAGTTTCTTCCTCGTAGCAGAAA
GAGCCCATCGTGAACTCTCTCTGCTTTCAGTAAACACAATTTATGCTTGCCAGTTTTGTC
ATTGAACTGATGAGATTTAGGCTTTTGGAGCTTAAGCTTCACGGAAAGGTGGCATTGGCT
AGCCTAGCAAGGGCTAGTTGGTGCTAATTCAAGTTGTCACGACGGCTTTGTCCTTCAGAG
CGAAGCCACATCCTGGGCATAACGAGACATGCAAGAGAAGTCTGTTTAGGTCTCTCTTGA
GCTCACCTTCAGTGCACGGTGGTCGTGGAGCCCTACCATCTGAGGGAGGACATCCTTCTG
ACCTAACATATTTGGCTGGTGGAGGACAATCCCTTGACTTTATTGCCTCTCTCACTCCTG
CCTACTTCTCTTTGAAGAGGTGTGAGTGAGTGAAGGCCCAGCATCATGCGGACAATTCAG
CGTGTAGAAACTGTTCTGTCCATTAATCAGTATGATGCTGAGAATGGGAAGGAGCCTCTT
GGTAATTGCTGTGCCCCAGGATCTTCCCTGCCTTTGTTTAAGTTTCCAAGAAAGCTCCGT
TTTCCTCCTGGTGATGAAAGCTGTTCCAAGACTGA
■■Homology search results ■■ -
sp_hit_id P08103
Definition sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus
Align length 22
Score (bit) 30.8
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957605|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M24, 5'
         (635 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus ...    31   6.1  

>sp|P08103|HCK_MOUSE Tyrosine-protein kinase HCK OS=Mus musculus
           GN=Hck PE=1 SV=4
          Length = 524

 Score = 30.8 bits (68), Expect = 6.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -2

Query: 355 GCPPSDGRAPRPPCTEGELKRD 290
           GCP S+GRAPR  C +    RD
Sbjct: 11  GCPRSEGRAPRMGCVKSRFLRD 32
tr_hit_id B8LLJ1
Definition tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 46
Score (bit) 43.1
E-value 0.014
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957605|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_M24, 5'
         (635 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea...    43   0.014
tr|B8LL93|B8LL93_PICSI Putative uncharacterized protein OS=Picea...    43   0.014
tr|A9SSY3|A9SSY3_PHYPA Predicted protein OS=Physcomitrella paten...    42   0.024
tr|B8LM04|B8LM04_PICSI Putative uncharacterized protein OS=Picea...    42   0.031
tr|A9T7K7|A9T7K7_PHYPA Predicted protein (Fragment) OS=Physcomit...    42   0.031
tr|Q2QWM9|Q2QWM9_ORYSJ Os12g0190000 protein OS=Oryza sativa subs...    40   0.090
tr|B6TMF8|B6TMF8_MAIZE VTC2 OS=Zea mays PE=2 SV=1                      40   0.090
tr|A7PRA4|A7PRA4_VITVI Chromosome chr14 scaffold_26, whole genom...    40   0.12 
tr|B8BNI6|B8BNI6_ORYSI Putative uncharacterized protein OS=Oryza...    36   1.7  
tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas reinha...    35   5.0  
tr|B3GK04|B3GK04_TOBAC VTC2-like protein OS=Nicotiana tabacum PE...    34   8.4  

>tr|B8LLJ1|B8LLJ1_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 431

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRK 594
           M TI+R  T+LS  Q  +E    G+  LG CC PGS LPL+ F R+
Sbjct: 1   MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|B8LL93|B8LL93_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 436

 Score = 43.1 bits (100), Expect = 0.014
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRK 594
           M TI+R  T+LS  Q  +E    G+  LG CC PGS LPL+ F R+
Sbjct: 1   MLTIKRCPTILSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|A9SSY3|A9SSY3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166416 PE=4 SV=1
          Length = 460

 Score = 42.4 bits (98), Expect = 0.024
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 3/43 (6%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKF 585
           M TI+RVETV+S++Q   +    G++ LG CC PG+ LPL+ F
Sbjct: 1   MLTIKRVETVVSMHQQLEQVPGCGRDCLGTCCIPGAKLPLYAF 43


>tr|B8LM04|B8LM04_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 435

 Score = 42.0 bits (97), Expect = 0.031
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRK 594
           M TI+R  T++S  Q  +E    G+  LG CC PGS LPL+ F R+
Sbjct: 1   MLTIKRCPTIVSNYQEGSEGLGCGRNCLGQCCVPGSKLPLYTFKRR 46


>tr|A9T7K7|A9T7K7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_3338 PE=4 SV=1
          Length = 386

 Score = 42.0 bits (97), Expect = 0.031
 Identities = 22/46 (47%), Positives = 30/46 (65%), Gaps = 3/46 (6%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN---GKEPLGNCCAPGSSLPLFKFPRK 594
           M TI+RVETV+S+ Q   +    G++ LGNCC  G+ LPL+ F  K
Sbjct: 1   MLTIRRVETVVSMQQQLDQGSGCGRDCLGNCCIRGTKLPLYTFGLK 46


>tr|Q2QWM9|Q2QWM9_ORYSJ Os12g0190000 protein OS=Oryza sativa subsp.
           japonica GN=Os12g0190000 PE=4 SV=1
          Length = 438

 Score = 40.4 bits (93), Expect = 0.090
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
 Frame = +1

Query: 472 TIQRVETVLSINQYDAEN----------GKEPLGNCCAPGSSLPLFKFPRKLRFPPGDES 621
           TI+RV TV+S  Q DA            G++ LG+CC P S LPL+ F    + P   E 
Sbjct: 6   TIKRVPTVVSNYQEDAAATAGERPRAGCGRDCLGDCCLPDSKLPLYAFKASPKKPSSQED 65

Query: 622 CS 627
            S
Sbjct: 66  AS 67


>tr|B6TMF8|B6TMF8_MAIZE VTC2 OS=Zea mays PE=2 SV=1
          Length = 435

 Score = 40.4 bits (93), Expect = 0.090
 Identities = 21/43 (48%), Positives = 27/43 (62%), Gaps = 5/43 (11%)
 Frame = +1

Query: 472 TIQRVETVLSINQYDAEN-----GKEPLGNCCAPGSSLPLFKF 585
           TI+RV TV+S  Q DA+      G+  LG+CC P S LPL+ F
Sbjct: 6   TIRRVPTVVSNYQEDADKPRAGCGRNCLGDCCLPASKLPLYAF 48


>tr|A7PRA4|A7PRA4_VITVI Chromosome chr14 scaffold_26, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022399001
           PE=4 SV=1
          Length = 433

 Score = 40.0 bits (92), Expect = 0.12
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 4/49 (8%)
 Frame = +1

Query: 466 MRTIQRVETVLSINQYDAEN----GKEPLGNCCAPGSSLPLFKFPRKLR 600
           M TI+RV TV+S  Q +A      G+  LG+CC P S LPL+ F + ++
Sbjct: 1   MLTIKRVPTVVSNYQEEASESLGCGRNCLGHCCLPVSKLPLYTFKKNVK 49


>tr|B8BNI6|B8BNI6_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_37726 PE=4 SV=1
          Length = 438

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 10/62 (16%)
 Frame = +1

Query: 472 TIQRVETVLS-INQYDAEN---------GKEPLGNCCAPGSSLPLFKFPRKLRFPPGDES 621
           TI+RV TV+S   +Y A           G++ LG+CC P S LPL+ F    + P   E 
Sbjct: 6   TIKRVPTVVSNYQEYAAATAGERPRAGCGRDCLGDCCLPDSKLPLYAFKASPKKPSLQED 65

Query: 622 CS 627
            S
Sbjct: 66  AS 67


>tr|A8HUV4|A8HUV4_CHLRE Predicted protein OS=Chlamydomonas
           reinhardtii GN=CHLREDRAFT_188099 PE=4 SV=1
          Length = 55

 Score = 34.7 bits (78), Expect = 5.0
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 318 GGRGALPSEGGHPSDLTYLAGGGQ 389
           GGRGA PS GG P D    AGGGQ
Sbjct: 32  GGRGAAPSCGGKPKDALSKAGGGQ 55