| DK957642 |
| Clone id |
TST39A01NGRL0028_O13 |
| Library |
TST39 |
| Length |
638 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_O13. 5' end sequence. |
| Accession |
DK957642 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL1186Contig1 |
| Sequence |
GAGAGTGCGAGATTCAGCGAGAGCCTAGAGGTCTCTGAGAAACTCGAGCTGCTACACAGA CGGAATCGCAAGCTCGTCGACTAGTCGCCATGGCCGCCTTCAACAAGATCAAGGTTCAGA AGCCTATCGTGGAGATGGACGGTGATGAAATGACAAGGGTGATCTGGAAGATGATTAAGG ATAAGCTCATTCTGCCGTTCCTTGACCTGGACATAAAGTATTTTGACCTTGGGCTGGAAC ACAGAGATGCTACCAATGATCATGTGACAACTGAGTCAGCTTTGGCCACCTTAAAGTACA ACGTGGCTGTGAAGTGTGCAACGATTACTCCTGATGAAACGCGAGTGAAGGAGTTTGGAC TGAAGTTCATGTGGAAAAGTCCAAATGGTACCATCAGAAATATTTTGAATGGCACTGTGT TCCGAGAGCCTATTGTTTGCAAGAATGTTCCGAGGCTAGTTCCAGGCTGGACAAAACCTA TCTGCATCGGGAGGCATGCTTTTGGTGATCAATACAGAGCCACTGACACTGTCATCAAAT GCCCTGGAAAGCTCAAGCTAGTCTTTGTTCCTTCAAAAGGAGGTGAAGCTGAGGAGATGG AGGTATTTGATTTTCAGGGAGCTGGTGGTGTCGCCCTG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q40345 |
| Definition |
sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa |
| Align length |
184 |
| Score (bit) |
310.0 |
| E-value |
3.0e-84 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957642|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0028_O13, 5' (638 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplas... 310 3e-84 sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine ... 310 3e-84 sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum ... 308 2e-83 sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotian... 306 8e-83 sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondr... 268 1e-71 sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondria... 268 2e-71 sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondria... 266 7e-71 sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondr... 263 4e-70 sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondr... 262 1e-69 sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondr... 261 2e-69 sp|O13294|IDH2_CANTR Isocitrate dehydrogenase [NADP] peroxisomal... 258 1e-68 sp|P79089|IDHP_ASPNG Isocitrate dehydrogenase [NADP], mitochondr... 258 2e-68 sp|P53982|IDHH_YEAST Isocitrate dehydrogenase [NADP] OS=Saccharo... 256 9e-68 sp|O14254|IDHP_SCHPO Probable isocitrate dehydrogenase [NADP], m... 253 4e-67 sp|P41939|IDHC_YEAST Isocitrate dehydrogenase [NADP] cytoplasmic... 253 8e-67 sp|O13285|IDH1_CANTR Isocitrate dehydrogenase [NADP], mitochondr... 253 8e-67 sp|P21954|IDHP_YEAST Isocitrate dehydrogenase [NADP], mitochondr... 246 7e-65 sp|P65097|IDH_MYCTU Isocitrate dehydrogenase [NADP] OS=Mycobacte... 243 8e-64 sp|P65098|IDH_MYCBO Isocitrate dehydrogenase [NADP] OS=Mycobacte... 243 8e-64 sp|P41562|IDHC_RAT Isocitrate dehydrogenase [NADP] cytoplasmic O... 242 1e-63 sp|O88844|IDHC_MOUSE Isocitrate dehydrogenase [NADP] cytoplasmic... 242 1e-63 sp|Q9Z2K9|IDHC_MICME Isocitrate dehydrogenase [NADP] cytoplasmic... 241 2e-63 sp|Q75JR2|IDHP_DICDI Isocitrate dehydrogenase [NADP], mitochondr... 241 3e-63 sp|Q9Z2K8|IDHC_MICOH Isocitrate dehydrogenase [NADP] cytoplasmic... 240 5e-63 sp|Q5R9C5|IDHC_PONAB Isocitrate dehydrogenase [NADP] cytoplasmic... 239 7e-63 sp|O75874|IDHC_HUMAN Isocitrate dehydrogenase [NADP] cytoplasmic... 238 3e-62 sp|Q9XSG3|IDHC_BOVIN Isocitrate dehydrogenase [NADP] cytoplasmic... 238 3e-62 sp|P50215|IDH_SPHYA Isocitrate dehydrogenase [NADP] OS=Sphingomo... 237 3e-62 sp|Q6XUZ5|IDHC_SHEEP Isocitrate dehydrogenase [NADP] cytoplasmic... 237 3e-62 sp|Q75JR3|IDHC_DICDI Isocitrate dehydrogenase [NADP] cytoplasmic... 235 1e-61
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Length = 433
Score = 310 bits (795), Expect = 3e-84 Identities = 147/184 (79%), Positives = 161/184 (87%) Frame = +3
Query: 87 AMAAFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHV 266 A F KIKV PIVEMDGDEMTR+IWK IKDKLI PF++LDIKYFDLGL +RD TND V Sbjct: 20 ATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVELDIKYFDLGLPYRDETNDKV 79
Query: 267 TTESALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKN 446 T ESA ATLKYNVA+KCATITPDE RVKEFGLK MW+SPNGTIRNILNGTVFREPI+CKN Sbjct: 80 TVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPIICKN 139
Query: 447 VPRLVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAG 626 +PRL+PGWTKPICIGRHAFGDQYRATD+VIK PGKLKLVFVP GE ++EV++F G G Sbjct: 140 IPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFVPEGQGETTDLEVYNFTGEG 199
Query: 627 GVAL 638 GVAL Sbjct: 200 GVAL 203
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Length = 413
Score = 310 bits (795), Expect = 3e-84 Identities = 152/183 (83%), Positives = 161/183 (87%) Frame = +3
Query: 90 MAAFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVT 269 MAAF KIKV PIVEMDGDEMTRVIWK IKDKLILPFL+LDIKY+DLGL +RD T+D VT Sbjct: 1 MAAFQKIKVANPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYYDLGLPYRDETDDKVT 60
Query: 270 TESALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNV 449 ESA ATLKYNVA+KCATITPDE RVKEFGLK MWKSPNGTIRNILNGTVFREPI+CKN+ Sbjct: 61 IESAEATLKYNVAIKCATITPDEARVKEFGLKSMWKSPNGTIRNILNGTVFREPILCKNI 120
Query: 450 PRLVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGG 629 PRLVPGWTK ICIGRHAFGDQYRATDTVIK GKLKLVFVP GE E EVF+F G GG Sbjct: 121 PRLVPGWTKAICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGQGEETEFEVFNFTGEGG 180
Query: 630 VAL 638 V+L Sbjct: 181 VSL 183
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Length = 416
Score = 308 bits (788), Expect = 2e-83 Identities = 150/181 (82%), Positives = 158/181 (87%) Frame = +3
Query: 96 AFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVTTE 275 AF KI VQ PIVEMDGDEMTRVIWK IKDKLILPFL+LDIKYF LGL HRDAT+D VT E Sbjct: 2 AFQKITVQNPIVEMDGDEMTRVIWKSIKDKLILPFLELDIKYFSLGLPHRDATDDKVTVE 61
Query: 276 SALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNVPR 455 SA AT KYNVA+KCATITPDE RVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PR Sbjct: 62 SAEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPR 121
Query: 456 LVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGGVA 635 LVPGWTKPICIGRHAFGDQYRATDTVIK GKLKLVFVP E E EV++F GAGGVA Sbjct: 122 LVPGWTKPICIGRHAFGDQYRATDTVIKGAGKLKLVFVPEGSDEKTEFEVYNFTGAGGVA 181
Query: 636 L 638 L Sbjct: 182 L 182
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Length = 415
Score = 306 bits (783), Expect = 8e-83 Identities = 148/180 (82%), Positives = 159/180 (88%) Frame = +3
Query: 99 FNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVTTES 278 F+KIKV+ PIVEMDGDEMTRVIWK IKDKLI PFL+LDIKYFDLGL HRDAT+D VT ES Sbjct: 3 FDKIKVENPIVEMDGDEMTRVIWKSIKDKLICPFLELDIKYFDLGLPHRDATDDKVTVES 62
Query: 279 ALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNVPRL 458 A AT KYNVA+KCATITPDE RVKEF LK MW+SPNGTIRNILNGTVFREPI+CKN+PRL Sbjct: 63 AEATQKYNVAIKCATITPDEARVKEFNLKSMWRSPNGTIRNILNGTVFREPIMCKNIPRL 122
Query: 459 VPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGGVAL 638 VPGWTKPICIGRHAFGDQYRATDTVI+ GKLKLVFVP E E EV++F GAGGVAL Sbjct: 123 VPGWTKPICIGRHAFGDQYRATDTVIQGAGKLKLVFVPEGTDEKTEFEVYNFTGAGGVAL 182
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Length = 452
Score = 268 bits (686), Expect = 1e-71 Identities = 129/181 (71%), Positives = 150/181 (82%) Frame = +3
Query: 96 AFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVTTE 275 A +IKV+KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDLGL +RD TND VT + Sbjct: 40 AEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 99
Query: 276 SALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNVPR 455 SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFREPI+CKN+PR Sbjct: 100 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 159
Query: 456 LVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGGVA 635 LVPGWTKPI IGRHA GDQY+ATD V+ G KLVF P G A+E EV++F AGGV Sbjct: 160 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKLVFTPKDGSSAKEWEVYNFP-AGGVG 218
Query: 636 L 638 + Sbjct: 219 M 219
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Length = 452
Score = 268 bits (684), Expect = 2e-71 Identities = 129/181 (71%), Positives = 150/181 (82%) Frame = +3
Query: 96 AFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVTTE 275 A +IKV+KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDLGL +RD TND VT + Sbjct: 40 AEKRIKVEKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 99
Query: 276 SALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNVPR 455 SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFREPI+CKN+PR Sbjct: 100 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 159
Query: 456 LVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGGVA 635 LVPGWTKPI IGRHA GDQY+ATD V+ G KLVF P G A+E EV++F AGGV Sbjct: 160 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGMFKLVFTPKDGSGAKEWEVYNFP-AGGVG 218
Query: 636 L 638 + Sbjct: 219 M 219
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Length = 421
Score = 266 bits (680), Expect = 7e-71 Identities = 129/189 (68%), Positives = 151/189 (79%) Frame = +3
Query: 72 ARRLVAMAAFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDA 251 AR A +IKV KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDLGL +RD Sbjct: 1 ARAAARHYADQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQ 60
Query: 252 TNDHVTTESALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREP 431 TND VT +SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFREP Sbjct: 61 TNDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREP 120
Query: 432 IVCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFD 611 I+CKN+PRLVPGWTKPI IGRHA GDQY+ATD V+ G K+VF P G A++ EV++ Sbjct: 121 IICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYN 180
Query: 612 FQGAGGVAL 638 F AGGV + Sbjct: 181 FP-AGGVGM 188
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Length = 452
Score = 263 bits (673), Expect = 4e-70 Identities = 127/181 (70%), Positives = 148/181 (81%) Frame = +3
Query: 96 AFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDLGLEHRDATNDHVTTE 275 A +IKV KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDLGL +RD TND VT + Sbjct: 40 ADKRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTID 99
Query: 276 SALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILNGTVFREPIVCKNVPR 455 SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL GTVFREPI+CKN+PR Sbjct: 100 SALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPR 159
Query: 456 LVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEAEEMEVFDFQGAGGVA 635 LVPGWTKPI IGRHA GDQY+ATD V+ G K+VF P G +E EV++F AGGV Sbjct: 160 LVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKVVFTPKDGSGPKEWEVYNFP-AGGVG 218
Query: 636 L 638 + Sbjct: 219 M 219
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Length = 452
Score = 262 bits (669), Expect = 1e-69 Identities = 130/196 (66%), Positives = 153/196 (78%) Frame = +3
Query: 51 ATQTESQARRLVAMAAFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDL 230 A ++ Q RR A +IKV KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDL Sbjct: 28 APTSQEQTRRHYAD---KRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDL 84
Query: 231 GLEHRDATNDHVTTESALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILN 410 GL +RD T+D VT +SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL Sbjct: 85 GLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILG 144
Query: 411 GTVFREPIVCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEA 590 GTVFREPI+CKN+PRLVPGWTKPI IGRHA GDQY+ATD V G K+VF P G Sbjct: 145 GTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGV 204
Query: 591 EEMEVFDFQGAGGVAL 638 +E EV++F AGGV + Sbjct: 205 KEWEVYNFP-AGGVGM 219
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Length = 452
Score = 261 bits (668), Expect = 2e-69 Identities = 130/196 (66%), Positives = 153/196 (78%) Frame = +3
Query: 51 ATQTESQARRLVAMAAFNKIKVQKPIVEMDGDEMTRVIWKMIKDKLILPFLDLDIKYFDL 230 A ++ Q RR A +IKV KP+VEMDGDEMTR+IW+ IK+KLILP +D+ +KYFDL Sbjct: 28 APTSQEQPRRHYAD---KRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDIQLKYFDL 84
Query: 231 GLEHRDATNDHVTTESALATLKYNVAVKCATITPDETRVKEFGLKFMWKSPNGTIRNILN 410 GL +RD T+D VT +SALAT KY+VAVKCATITPDE RV+EF LK MWKSPNGTIRNIL Sbjct: 85 GLPNRDQTDDQVTIDSALATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILG 144
Query: 411 GTVFREPIVCKNVPRLVPGWTKPICIGRHAFGDQYRATDTVIKCPGKLKLVFVPSKGGEA 590 GTVFREPI+CKN+PRLVPGWTKPI IGRHA GDQY+ATD V G K+VF P G Sbjct: 145 GTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVADRAGTFKMVFTPKDGSGV 204
Query: 591 EEMEVFDFQGAGGVAL 638 +E EV++F AGGV + Sbjct: 205 KEWEVYNFP-AGGVGM 219
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
B8LKH5 |
| Definition |
tr|B8LKH5|B8LKH5_PICSI Putative uncharacterized protein OS=Picea sitchensis |
| Align length |
181 |
| Score (bit) |
319.0 |
| E-value |
8.0e-86 |
| Report |
 |