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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957675
Clone id TST39A01NGRL0028_P22
Library
Length 663
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0028_P22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCGGCTTCGAAGACGGGACAACAAGGATGAGACGTTAACTCTGCCCGCACCATCTGCCTT
CAATCTATAGTTCTAGGCTTGTTTATCGATCATGAATGGAAATTATGAGACAGCCAAGGA
AGGTGGTTTCATCAGTTCTGTCGGACACGATCGAGCACCCAAGGAAAGTTTGGTATTACC
AGGTCTAGCTAATGGGTCTGCAGAGATGAAAGGTACAGATGCCAGTTTAGGCCTTGTAAC
TTCAAAGTCCAGTGTGGTAACCCAAACAATAGAAGAGGTTGGGCCTTCATTGGGCTTGGA
GGGTGCAAAAGAGGATATGGTAATGGAGGATGTTCATACTTCAAAAGGTGATGGTAATGA
GTTAGAGGATCTAAAGTGTATGTATGAACACGAAGGAGACTGGAATAATGAGGAGGAAGA
CAAAGATTGGGACCCTGATGAGAATGTAGAGGTTCTTGTTGAGTGGTTCTGTATCAACTG
CACCGATTCAAATTCTGAAGATGAATCTCATTGCAAGCAATGTGGGGAGCACAGAAATTC
TGGCATTCTTAAACGGGGGTTCTTAGCGTCAATCTACTTGCCAGAAAATGTTACTGAATC
AAGGATTGAACCAGGTGCGACAGAGGATAAGCCGTTTCTGCCCTCACCACCTCTCTGGAC
TTC
■■Homology search results ■■ -
sp_hit_id Q8GXJ1
Definition sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thaliana
Align length 43
Score (bit) 56.6
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957675|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_P22, 5'
         (663 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis thal...    57   1e-07
sp|Q9ZW82|PIRL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsi...    33   1.8  
sp|Q03281|YD458_YEAST Uncharacterized protein YDR458C OS=Sacchar...    30   8.7  
sp|P03259|E1A_ADE12 Early E1A 29.5 kDa protein OS=Human adenovir...    30   8.7  

>sp|Q8GXJ1|HDA15_ARATH Histone deacetylase 15 OS=Arabidopsis
           thaliana GN=HDA15 PE=2 SV=1
          Length = 552

 Score = 56.6 bits (135), Expect = 1e-07
 Identities = 23/43 (53%), Positives = 30/43 (69%)
 Frame = +2

Query: 458 VEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASIYLPE 586
           V+W C+NCT SN  D  HC  CGEH+ SGIL+ G+LAS +  +
Sbjct: 88  VKWCCVNCTMSNPGDMVHCCICGEHKESGILRHGYLASPFFKD 130


>sp|Q9ZW82|PIRL2_ARATH Pirin-like protein At2g43120 OS=Arabidopsis
           thaliana GN=At2g43120 PE=2 SV=3
          Length = 321

 Score = 32.7 bits (73), Expect = 1.8
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 2/82 (2%)
 Frame = +2

Query: 107 ETAKEGGFISSVGHDRAPKESLVLPGLANGSAEM--KGTDASLGLVTSKSSVVTQTIEEV 280
           E+ + GG  SS      P  S+V+ G  N    +  K +   L  V      + + + + 
Sbjct: 228 ESGEGGGVFSSSNSSPIPAHSVVVFGPGNDGVSVWNKSSSKQLRFVLIAGEPIGEPVVQY 287

Query: 281 GPSLGLEGAKEDMVMEDVHTSK 346
           GP +    A+ DM +ED H  K
Sbjct: 288 GPFVMNTQAEIDMTIEDYHYGK 309


>sp|Q03281|YD458_YEAST Uncharacterized protein YDR458C
           OS=Saccharomyces cerevisiae GN=YDR458C PE=1 SV=1
          Length = 663

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 239 TSKSSVVTQTIEEVGPSLGLEGAKEDMVMEDVH 337
           T  SS+  +T E VGPS G E   E  VME+++
Sbjct: 218 TDLSSIRIETEEPVGPSTGAETRNESEVMENIN 250


>sp|P03259|E1A_ADE12 Early E1A 29.5 kDa protein OS=Human adenovirus
           A serotype 12 PE=1 SV=1
          Length = 266

 Score = 30.4 bits (67), Expect = 8.7
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 9/57 (15%)
 Frame = +2

Query: 509 HCKQCGEHRNSG---------ILKRGFLASIYLPENVTESRIEPGATEDKPFLPSPP 652
           +CK C  HRNS             R +   IY P  V+++  EP +T D    PSPP
Sbjct: 158 NCKSCEHHRNSTGNTDLMCSLCYLRAYNMFIYSP--VSDNEPEPNSTLDGDERPSPP 212
tr_hit_id A7PGP4
Definition tr|A7PGP4|A7PGP4_VITVI Chromosome chr17 scaffold_16, whole genome shotgun sequence OS=Vitis vinifera
Align length 44
Score (bit) 62.0
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957675|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0028_P22, 5'
         (663 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PGP4|A7PGP4_VITVI Chromosome chr17 scaffold_16, whole genom...    62   3e-08
tr|B8LKL4|B8LKL4_PICSI Putative uncharacterized protein OS=Picea...    59   2e-07
tr|A9TT63|A9TT63_PHYPA Class II RPD3 type histone deacetylase pr...    54   1e-05
tr|A9T0A0|A9T0A0_PHYPA Class II RPD3 type histone deacetylase pr...    46   0.002
tr|Q8LHS7|Q8LHS7_ORYSJ Putative histone deacetylase OS=Oryza sat...    39   0.37 
tr|Q0D8F2|Q0D8F2_ORYSJ Os07g0164100 protein OS=Oryza sativa subs...    39   0.37 
tr|A2YIG4|A2YIG4_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.37 
tr|Q17J95|Q17J95_AEDAE Putative uncharacterized protein OS=Aedes...    35   4.1  
tr|B1B3R0|B1B3R0_9CILI Putative uncharacterized protein scf4 (Fr...    34   7.1  
tr|B6QK69|B6QK69_PENMA Midasin, putative OS=Penicillium marneffe...    34   9.2  
tr|Q0VLV8|Q0VLV8_ALCBS Putative uncharacterized protein OS=Alcan...    34   9.3  

>tr|A7PGP4|A7PGP4_VITVI Chromosome chr17 scaffold_16, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00017632001
           PE=4 SV=1
          Length = 609

 Score = 62.0 bits (149), Expect = 3e-08
 Identities = 24/44 (54%), Positives = 31/44 (70%)
 Frame = +2

Query: 455 LVEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASIYLPE 586
           ++ WFC+NCT +N +D  HC  CGEH+ SGILK GF AS +  E
Sbjct: 133 VIRWFCVNCTMANQDDVVHCDICGEHKESGILKHGFFASPFSQE 176


>tr|B8LKL4|B8LKL4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 648

 Score = 59.3 bits (142), Expect = 2e-07
 Identities = 37/121 (30%), Positives = 53/121 (43%)
 Frame = +2

Query: 239 TSKSSVVTQTIEEVGPSLGLEGAKEDMVMEDVHTSKGDGNELEDLKCMYEHXXXXXXXXX 418
           +S+   +  T++    SL  EG       E VH     G  L++L  +Y           
Sbjct: 107 SSEGDKLQGTVDFRQNSLSSEG-------EQVH-----GRTLDELLALYGQEGSLADDED 154

Query: 419 XXXXXXXXXVEVLVEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASIYLPENVTE 598
                      V  +WFCINCT  N ++  HC  CGE+R SGIL  G+L+  + P  V+ 
Sbjct: 155 DNGWSPYGVFAVRKKWFCINCTMPNLDEALHCDLCGEYRESGILNEGYLSPQFAPAEVSS 214

Query: 599 S 601
           S
Sbjct: 215 S 215


>tr|A9TT63|A9TT63_PHYPA Class II RPD3 type histone deacetylase
           protein OS=Physcomitrella patens subsp. patens
           GN=HDA1510 PE=4 SV=1
          Length = 535

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 22/41 (53%), Positives = 28/41 (68%)
 Frame = +2

Query: 458 VEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASIYL 580
           V W C NC   N EDE +C +C EHRNS IL++GF++ I L
Sbjct: 67  VRWICTNCIMPNPEDEVYCWKCNEHRNSSILEQGFMSLISL 107


>tr|A9T0A0|A9T0A0_PHYPA Class II RPD3 type histone deacetylase
           protein OS=Physcomitrella patens subsp. patens
           GN=HDA1501 PE=4 SV=1
          Length = 534

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 21/39 (53%), Positives = 26/39 (66%)
 Frame = +2

Query: 458 VEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASI 574
           V W CINCT  N EDE HC +C E  +S IL++  LAS+
Sbjct: 67  VRWICINCTMPNPEDEDHCWKCNEQCDSNILEQK-LASV 104


>tr|Q8LHS7|Q8LHS7_ORYSJ Putative histone deacetylase OS=Oryza sativa
           subsp. japonica GN=P0039H02.101 PE=4 SV=2
          Length = 602

 Score = 38.5 bits (88), Expect = 0.37
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 LVEWFCINCTDSNSEDESHCKQCGEHRNSGIL 550
           L  WFC+NCT  N E  +HC+ C E + S ++
Sbjct: 147 LSRWFCLNCTVPNMEGFTHCQNCDELKGSVVV 178


>tr|Q0D8F2|Q0D8F2_ORYSJ Os07g0164100 protein OS=Oryza sativa subsp.
           japonica GN=Os07g0164100 PE=4 SV=1
          Length = 623

 Score = 38.5 bits (88), Expect = 0.37
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 LVEWFCINCTDSNSEDESHCKQCGEHRNSGIL 550
           L  WFC+NCT  N E  +HC+ C E + S ++
Sbjct: 147 LSRWFCLNCTVPNMEGFTHCQNCDELKGSVVV 178


>tr|A2YIG4|A2YIG4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_25007 PE=4 SV=1
          Length = 623

 Score = 38.5 bits (88), Expect = 0.37
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = +2

Query: 455 LVEWFCINCTDSNSEDESHCKQCGEHRNSGIL 550
           L  WFC+NCT  N E  +HC+ C E + S ++
Sbjct: 147 LSRWFCLNCTVPNMEGFTHCQNCDELKGSVVV 178


>tr|Q17J95|Q17J95_AEDAE Putative uncharacterized protein OS=Aedes
           aegypti GN=AAEL002091 PE=4 SV=1
          Length = 756

 Score = 35.0 bits (79), Expect = 4.1
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = +2

Query: 458 VEWFCINCTDSNSEDESHCKQCGEHRNSGILKRGFLASIYLPENVTESRI 607
           ++WFC  CT  N      C QC   R   +L +       LPE  T S++
Sbjct: 108 LKWFCNTCTYLNLSHARRCLQCNRKREDEVLIKQLGQQKSLPEKPTASKV 157


>tr|B1B3R0|B1B3R0_9CILI Putative uncharacterized protein scf4
           (Fragment) OS=Sorogena stoianovitchae GN=scf4 PE=2 SV=1
          Length = 560

 Score = 34.3 bits (77), Expect = 7.1
 Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
 Frame = -1

Query: 357 LPSPFEV*TSSITIS--SFAPSKPNEGPTSSIVWVTTLDFEVTRPKLASVPFISADPLAR 184
           LPSP    TS +T +  S AP+ P  GP+++ V + TL    T    +S    SA PLA+
Sbjct: 19  LPSPS---TSVVTKAAPSLAPATPTPGPSATSVSMPTLAVSRTSSTSSST---SASPLAK 72

Query: 183 PGNTKLSLGARSCPTE--LMKPP 121
           P  T LS      P+    + PP
Sbjct: 73  PPCTPLSPWTTRVPSRSPALSPP 95


>tr|B6QK69|B6QK69_PENMA Midasin, putative OS=Penicillium marneffei
           ATCC 18224 GN=PMAA_092250 PE=4 SV=1
          Length = 4898

 Score = 33.9 bits (76), Expect = 9.2
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
 Frame = +2

Query: 107 ETAKEGGFISSVGHDRAPKE--SLVLPGLANGSA-------EMKGTDASLGLVTSKSSVV 259
           + AKEG +I     DRAP E   L+LP +  G          +K  D    + T KSS+ 
Sbjct: 356 KAAKEGRWILIEDLDRAPSEVIGLMLPVIEKGELIIPSRKERIKCADGFRIIATMKSSLN 415

Query: 260 TQTIEEVGPSLGLEGAK 310
           ++  EEV PS GL GA+
Sbjct: 416 SKG-EEVAPSHGLLGAR 431