DK957740 |
Clone id |
TST39A01NGRL0029_C15 |
Library |
TST39 |
Length |
614 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_C15. 5' end sequence. |
Accession |
DK957740 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1585Contig1 |
Sequence |
GTTTGAACAACAGGGTCAGGGAATACCGGAGACCAGCTGCTCTGCTTCCATTTTGCAGAT TCAGCTTTATGCTGGCCTTTAGCTTTTACCTCCAAGGGACTTGTTTCCAGCAAGGGGTTT GATTTTCTGCGCATTTTGTGACATATTGTGCCTGTAACAAAGATGGATGGTTTGATAGCT CATAAGGCTTGCGGTCAGCAAATACTTGTCATGCGGGATAATGATCCTGAGCTTTGCTGT AAGTTGGGCATGGGTTCTAGTGAATTTACATGTGGAATACAGAGGGCAATTCCTCGTCTG AACTTCAAAAGAGGGCATGCTCGGGGCATTTTTCGGGCGCATGCCACCATGACCCCTCTT GAACTAGCCCGGGAGGTCAAGAAGGAAAATCTCACTTTTGAGCTTCCTAAATTCGACAAG TCTGCACAAAACAGAGTTGATTTGGTTGTTGTAGGATCAGGCCCCGCTGGCCTTGCTGTT GCCAAGCAGGTTTCTGAAGCTGGAGTGAGTGTTTGTTGCATCGATCCTGCACCACAGAGC ATTTGGCCCAATAATTATGGTGTCTGGGTTGATGAGTTTGAAGCCATGGACCTCTTGGAT TGCTTGGACACCAC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q38933 |
Definition |
sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana |
Align length |
85 |
Score (bit) |
136.0 |
E-value |
1.0e-31 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957740|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_C15, 5' (614 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Ara... 136 1e-31 sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Sol... 133 8e-31 sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplastic/chromo... 133 8e-31 sp|Q43578|LCYB_TOBAC Lycopene beta cyclase, chloroplastic OS=Nic... 130 5e-30 sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplast ... 104 3e-22 sp|Q40424|LCYB_NARPS Lycopene beta cyclase, chloroplastic/chromo... 99 1e-20 sp|Q42435|CCS_CAPAN Capsanthin/capsorubin synthase, chromoplast ... 99 2e-20 sp|O65837|LCYE_SOLLC Lycopene epsilon cyclase, chloroplastic OS=... 56 1e-07 sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic OS=... 55 3e-07 sp|Q55276|LCYB_SYNE7 Lycopene beta cyclase OS=Synechococcus elon... 50 7e-06 sp|O57920|GGR_PYRHO Digeranylgeranylglycerophospholipid reductas... 40 0.010 sp|Q9RW68|Y801_DEIRA Uncharacterized carotenoid cyclase DR_0801 ... 40 0.012 sp|Q17745|TRXR1_CAEEL Thioredoxin reductase 1 OS=Caenorhabditis ... 39 0.016 sp|Q8U4J0|GGR_PYRFU Digeranylgeranylglycerophospholipid reductas... 39 0.016 sp|A3CST9|GGR_METMJ Digeranylgeranylglycerophospholipid reductas... 39 0.028 sp|Q3V7Z9|THI4_HALMA Putative thiazole biosynthetic enzyme OS=Ha... 38 0.036 sp|Q9S158|MHPA_COMTE 3-(3-hydroxy-phenyl)propionate/3-hydroxycin... 38 0.036 sp|A4T8B6|MHPA_MYCGI 3-(3-hydroxy-phenyl)propionate/3-hydroxycin... 38 0.047 sp|Q3IMI0|THI4_NATPD Putative thiazole biosynthetic enzyme OS=Na... 37 0.062 sp|Q9Y9Z0|THI4_AERPE Putative thiazole biosynthetic enzyme OS=Ae... 37 0.062 sp|Q9V2B0|GGR_PYRAB Digeranylgeranylglycerophospholipid reductas... 37 0.062 sp|Q18KP1|THI4_HALWD Putative thiazole biosynthetic enzyme OS=Ha... 37 0.081 sp|A7I9P9|GGR_METB6 Digeranylgeranylglycerophospholipid reductas... 37 0.081 sp|Q46337|SOXA_CORS1 Sarcosine oxidase subunit alpha OS=Coryneba... 37 0.11 sp|Q59160|OOXA_AGRT4 Opine oxidase subunit A OS=Agrobacterium tu... 37 0.11 sp|A6TAC9|MHPA_KLEP7 3-(3-hydroxy-phenyl)propionate/3-hydroxycin... 37 0.11 sp|P30635|GSHR_CAEEL Probable glutathione reductase 2 OS=Caenorh... 37 0.11 sp|O34399|GLTB_BACSU Glutamate synthase [NADPH] small chain OS=B... 36 0.18 sp|Q9NNW7|TRXR2_HUMAN Thioredoxin reductase 2, mitochondrial OS=... 35 0.23 sp|Q9VNT5|TRXR2_DROME Thioredoxin reductase 2, mitochondrial OS=... 35 0.23
>sp|Q38933|LCYB_ARATH Lycopene beta cyclase, chloroplastic OS=Arabidopsis thaliana GN=LCY1 PE=2 SV=1 Length = 501
Score = 136 bits (342), Expect = 1e-31 Identities = 64/85 (75%), Positives = 71/85 (83%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 537 L+L E KKENL FELP +D S VDL +VG GPAGLAVA+QVSEAG+SVC IDP+P+ Sbjct: 57 LDLVPETKKENLDFELPLYDTSKSQVVDLAIVGGGPAGLAVAQQVSEAGLSVCSIDPSPK 116
Query: 538 SIWPNNYGVWVDEFEAMDLLDCLDT 612 IWPNNYGVWVDEFEAMDLLDCLDT Sbjct: 117 LIWPNNYGVWVDEFEAMDLLDCLDT 141
>sp|Q43503|LCYB_SOLLC Lycopene beta cyclase, chloroplastic OS=Solanum lycopersicum GN=LCY1 PE=2 SV=1 Length = 500
Score = 133 bits (334), Expect = 8e-31 Identities = 65/84 (77%), Positives = 69/84 (82%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 537 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SVC IDP P+ Sbjct: 58 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPK 117
Query: 538 SIWPNNYGVWVDEFEAMDLLDCLD 609 IWPNNYGVWVDEFEAMDLLDCLD Sbjct: 118 LIWPNNYGVWVDEFEAMDLLDCLD 141
>sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplastic/chromoplastic OS=Capsicum annuum GN=LCY1 PE=2 SV=1 Length = 498
Score = 133 bits (334), Expect = 8e-31 Identities = 65/84 (77%), Positives = 69/84 (82%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 537 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SVC IDP P+ Sbjct: 56 LELVPETKKENLDFELPMYDPSKGVVVDLAVVGGGPAGLAVAQQVSEAGLSVCSIDPNPK 115
Query: 538 SIWPNNYGVWVDEFEAMDLLDCLD 609 IWPNNYGVWVDEFEAMDLLDCLD Sbjct: 116 LIWPNNYGVWVDEFEAMDLLDCLD 139
>sp|Q43578|LCYB_TOBAC Lycopene beta cyclase, chloroplastic OS=Nicotiana tabacum GN=LCY1 PE=2 SV=1 Length = 500
Score = 130 bits (327), Expect = 5e-30 Identities = 64/84 (76%), Positives = 69/84 (82%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 537 LEL E KKENL FELP +D S VDL VVG GPAGLAVA+QVSEAG+SV IDP+P+ Sbjct: 58 LELVPETKKENLDFELPMYDPSKGLVVDLAVVGGGPAGLAVAQQVSEAGLSVVSIDPSPK 117
Query: 538 SIWPNNYGVWVDEFEAMDLLDCLD 609 IWPNNYGVWVDEFEAMDLLDCLD Sbjct: 118 LIWPNNYGVWVDEFEAMDLLDCLD 141
>sp|Q9SEA0|CCS_CITSI Capsanthin/capsorubin synthase, chromoplast OS=Citrus sinensis GN=CCS PE=3 SV=1 Length = 503
Score = 104 bits (260), Expect = 3e-22 Identities = 58/118 (49%), Positives = 71/118 (60%), Gaps = 1/118 (0%) Frame = +1
Query: 259 SEFTCGIQRAIPRLNFKRGHARGIFRAHATMTPLELAREVKKENLTFELPKFDKSAQNRV 438 S F G Q A R H R R LEL E E L F+LP F S + R Sbjct: 29 SLFPLGRQNACSRKADHHHHHR--IRTSKFGNFLELTPESVPEFLDFDLPWFHPSDRIRY 86
Query: 439 DLVVVGSGPAGLAVAKQVSEA-GVSVCCIDPAPQSIWPNNYGVWVDEFEAMDLLDCLD 609 D++++G+GPAGL +A+QVS V VCC+DP+P S WPNNYGVWVDEFE + L+DCLD Sbjct: 87 DVIIIGTGPAGLRLAEQVSSRHSVKVCCVDPSPLSTWPNNYGVWVDEFEDIGLVDCLD 144
>sp|Q40424|LCYB_NARPS Lycopene beta cyclase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=LCY1 PE=2 SV=1 Length = 503
Score = 99.4 bits (246), Expect = 1e-20 Identities = 48/84 (57%), Positives = 59/84 (70%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQ 537 L+L E+KKE+L F+LP +D S +DL VVG GP + + + G+SV IDP P+ Sbjct: 62 LDLVPEIKKEHLEFDLPLYDPSKALTLDLAVVGGGPLARSCSTSLG-GGLSVVSIDPNPK 120
Query: 538 SIWPNNYGVWVDEFEAMDLLDCLD 609 IWPNNYGVWVDEFE MDLLDCLD Sbjct: 121 LIWPNNYGVWVDEFEDMDLLDCLD 144
>sp|Q42435|CCS_CAPAN Capsanthin/capsorubin synthase, chromoplast OS=Capsicum annuum GN=CCS PE=2 SV=1 Length = 498
Score = 98.6 bits (244), Expect = 2e-20 Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 1/85 (1%) Frame = +1
Query: 358 LELAREVKKENLTFELPKFDKSAQN-RVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAP 534 L+LA K E+L + D D++++G+GPAGL +A+QVS+ G+ VCC+DP+P Sbjct: 55 LDLAPTSKPESLDVNISWVDTDLDGAEFDVIIIGTGPAGLRLAEQVSKYGIKVCCVDPSP 114
Query: 535 QSIWPNNYGVWVDEFEAMDLLDCLD 609 S+WPNNYGVWVDEFE + L DCLD Sbjct: 115 LSMWPNNYGVWVDEFEKLGLEDCLD 139
>sp|O65837|LCYE_SOLLC Lycopene epsilon cyclase, chloroplastic OS=Solanum lycopersicum GN=CRTL-E-1 PE=2 SV=1 Length = 526
Score = 56.2 bits (134), Expect = 1e-07 Identities = 27/63 (42%), Positives = 42/63 (66%) Frame = +1
Query: 421 SAQNRVDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQSIWPNNYGVWVDEFEAMDLLD 600 + Q +DLVV+G GPAGLA+A + ++ G++V + P + NNYGVW DEF+ + L Sbjct: 101 AGQTVLDLVVIGCGPAGLALAAESAKLGLNVGLV--GPDLPFTNNYGVWEDEFKDLGLQA 158
Query: 601 CLD 609 C++ Sbjct: 159 CIE 161
>sp|Q38932|LCYE_ARATH Lycopene epsilon cyclase, chloroplastic OS=Arabidopsis thaliana GN=LUT2 PE=1 SV=2 Length = 524
Score = 55.1 bits (131), Expect = 3e-07 Identities = 27/58 (46%), Positives = 38/58 (65%) Frame = +1
Query: 436 VDLVVVGSGPAGLAVAKQVSEAGVSVCCIDPAPQSIWPNNYGVWVDEFEAMDLLDCLD 609 +DLVV+G GPAGLA+A + ++ G+ V I P + NNYGVW DEF + L C++ Sbjct: 109 LDLVVIGCGPAGLALAAESAKLGLKVGLI--GPDLPFTNNYGVWEDEFNDLGLQKCIE 164
>sp|Q55276|LCYB_SYNE7 Lycopene beta cyclase OS=Synechococcus elongatus (strain PCC 7942) GN=crtL PE=3 SV=1 Length = 411
Score = 50.4 bits (119), Expect = 7e-06 Identities = 22/53 (41%), Positives = 35/53 (66%), Gaps = 1/53 (1%) Frame = +1
Query: 439 DLVVVGSGPAGLAVAKQVSEAGVSVCCIDPA-PQSIWPNNYGVWVDEFEAMDL 594 D +V+GSGPAGLA+A ++++ G+ V + P P W N YG+W E +++ L Sbjct: 3 DALVIGSGPAGLAIAAELAQRGLKVQGLSPVDPFHPWENTYGIWGPELDSLGL 55
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q403Q4 |
Definition |
tr|Q403Q4|Q403Q4_TAXDI Putative lycopene beta cyclase OS=Taxodium distichum var. imbricarium |
Align length |
113 |
Score (bit) |
151.0 |
E-value |
3.0e-35 |
Report |
|