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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957762
Clone id TST39A01NGRL0029_D13
Library
Length 622
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_D13. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GGACCTTGGCGTCATCTCTCAGTACTCCACTTCTTCTGCGAGATCACAGAAACGGGCACT
TCGCGGAAGCCATCGCTATTCTAACTGTAAATTCAATCAGGGTATTACCTTCCACCCGCA
GAAGCTTCTCGAATTAGACATGGCCTCTTTGAGAAGTGCTTCTCTTCCCACGCAGTGTTT
CGTTACAGCCCACACGTCTGCTGAACCATTGTGCAAGCATGCACACACCCCTCGCCATAT
CCACACAAGCTATGCTGTTCTTTCAAGCTGCAAACGCCCTGGATTTGATGGAACCCACCA
AGCAGCTTCTACACACCGCCCTGGGAACCACAGAATTGAAACCTTTAATTTAAGTGGTCT
CACAGAGAATGAGAATGCTCATGAGGAGGGACACGCTGACTTTACCCTTTCAATTCGTGC
TATGGCTCCTGTTATGAAAAAAGGATACGGTGCATTTGGCGGTGGAGCTACCCTTGAAAA
ATCAAAGCTTGATTTGTCTCAGAAAACTTCGCAAGTAGCACCAAAGACCGAGGATGGTGG
TGGTGGTGGAGATATTGGCAAGGGAATAAATCATGGCGGTGGAGATGGAGGTGACGATGG
AGGTGATGATGATGATTACTTT
■■Homology search results ■■ -
sp_hit_id Q9GK80
Definition sp|Q9GK80|UPAR_PANTR Urokinase plasminogen activator surface receptor OS=Pan troglodytes
Align length 56
Score (bit) 30.4
E-value 7.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957762|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D13, 5'
         (622 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9GK80|UPAR_PANTR Urokinase plasminogen activator surface rec...    30   7.7  
sp|Q03405|UPAR_HUMAN Urokinase plasminogen activator surface rec...    30   7.7  

>sp|Q9GK80|UPAR_PANTR Urokinase plasminogen activator surface
           receptor OS=Pan troglodytes GN=PLAUR PE=2 SV=1
          Length = 335

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 173 QCFVTAHTSAEPLCKHAH-----TPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPG 325
           Q ++    +   +C+HAH     +  HI  S    S C  P  D  +++ +  +PG
Sbjct: 256 QSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSGAAPQPG 311


>sp|Q03405|UPAR_HUMAN Urokinase plasminogen activator surface
           receptor OS=Homo sapiens GN=PLAUR PE=1 SV=1
          Length = 335

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
 Frame = +2

Query: 173 QCFVTAHTSAEPLCKHAH-----TPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPG 325
           Q ++    +   +C+HAH     +  HI  S    S C  P  D  +++ +  +PG
Sbjct: 256 QSYMVRGCATASMCQHAHLGDAFSMNHIDVSCCTKSGCNHPDLDVQYRSGAAPQPG 311
tr_hit_id A7PYS5
Definition tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genome shotgun sequence OS=Vitis vinifera
Align length 34
Score (bit) 45.4
E-value 0.003
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957762|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D13, 5'
         (622 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genom...    45   0.003
tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment) OS=Physcomit...    41   0.050
tr|A3BF39|A3BF39_ORYSJ Putative uncharacterized protein OS=Oryza...    40   0.11 
tr|Q0WLD5|Q0WLD5_ARATH Putative uncharacterized protein At5g2469...    39   0.25 
tr|B8B248|B8B248_ORYSI Putative uncharacterized protein OS=Oryza...    39   0.33 
tr|Q9FIR5|Q9FIR5_ARATH Arabidopsis thaliana genomic DNA, chromos...    38   0.56 
tr|Q93W02|Q93W02_ARATH AT5g24690/MXC17_8 (Putative uncharacteriz...    38   0.56 
tr|Q0WMD6|Q0WMD6_ARATH Putative uncharacterized protein At5g2469...    38   0.56 
tr|Q0WMB2|Q0WMB2_ARATH Putative uncharacterized protein At5g2469...    38   0.56 
tr|Q0WL68|Q0WL68_ARATH Putative uncharacterized protein At5g2469...    38   0.56 
tr|Q0WKZ9|Q0WKZ9_ARATH Putative uncharacterized protein At5g2469...    38   0.56 
tr|A9RKY3|A9RKY3_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.8  
tr|B7FHF2|B7FHF2_MEDTR Putative uncharacterized protein OS=Medic...    35   3.6  

>tr|A7PYS5|A7PYS5_VITVI Chromosome chr12 scaffold_38, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00026559001
           PE=4 SV=1
          Length = 504

 Score = 45.4 bits (106), Expect = 0.003
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = +2

Query: 428 PVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPKT 529
           PVMK  YG+FG   TLEKSKLDLSQK S+++P+T
Sbjct: 90  PVMKGKYGSFGA-VTLEKSKLDLSQKQSRLSPET 122


>tr|A9RE60|A9RE60_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_22569 PE=4 SV=1
          Length = 431

 Score = 41.2 bits (95), Expect = 0.050
 Identities = 22/29 (75%), Positives = 24/29 (82%), Gaps = 1/29 (3%)
 Frame = +2

Query: 449 GAFGGG-ATLEKSKLDLSQKTSQVAPKTE 532
           GAFGGG ATLEKSKLDLSQ TS+V  + E
Sbjct: 1   GAFGGGGATLEKSKLDLSQSTSRVKQEVE 29


>tr|A3BF39|A3BF39_ORYSJ Putative uncharacterized protein OS=Oryza
            sativa subsp. japonica GN=OsJ_021661 PE=3 SV=1
          Length = 1067

 Score = 40.0 bits (92), Expect = 0.11
 Identities = 33/133 (24%), Positives = 49/133 (36%), Gaps = 4/133 (3%)
 Frame = +2

Query: 44   SQKRALRGSHRYSNCKFNQGITFHPQKLLELDMASLRSASLPTQCFVTAHTS----AEPL 211
            S K+    SH  S+ K N G++ H        M S + +S+        H       EP 
Sbjct: 714  SPKKCCSSSHHGSHAKKNHGVSHHCSDGPCKSMVSCKESSVAKNACHDHHHEHNHHEEPA 773

Query: 212  CKHAHTPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPGNHRIETFNLSGLTENENAHEEG 391
             KH+      H      S+CK P         + H   NH  +T NL   T+  + H   
Sbjct: 774  HKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHD-TKKHDCHGHE 832

Query: 392  HADFTLSIRAMAP 430
            H+     + A+ P
Sbjct: 833  HSTCKEELNALPP 845


>tr|Q0WLD5|Q0WLD5_ARATH Putative uncharacterized protein At5g24690
           OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1
          Length = 521

 Score = 38.9 bits (89), Expect = 0.25
 Identities = 18/35 (51%), Positives = 26/35 (74%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+++P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISEISPE 115


>tr|B8B248|B8B248_ORYSI Putative uncharacterized protein OS=Oryza
            sativa subsp. indica GN=OsI_24354 PE=4 SV=1
          Length = 1069

 Score = 38.5 bits (88), Expect = 0.33
 Identities = 34/133 (25%), Positives = 48/133 (36%), Gaps = 4/133 (3%)
 Frame = +2

Query: 44   SQKRALRGSHRYSNCKFNQGITFHPQKLLELDMASLRSASLPTQCFVTAHTS----AEPL 211
            S K+    SH  S+ K N GI+ H        M S + +S         H       EP 
Sbjct: 714  SPKKCCSSSHHGSHAKKNYGISNHCSDGPCKSMVSCKESSAAKNACHDHHHEHNHREEPA 773

Query: 212  CKHAHTPRHIHTSYAVLSSCKRPGFDGTHQAASTHRPGNHRIETFNLSGLTENENAHEEG 391
             KH+      H      S+CK P         + H   NH  +T NL   T+  + H   
Sbjct: 774  HKHSSNQHGCHDHSHGHSNCKEPSNQLITNKHACHDGHNHCADTSNLHD-TKKHDCHGHE 832

Query: 392  HADFTLSIRAMAP 430
            H+     + A+ P
Sbjct: 833  HSTCKEELNALPP 845


>tr|Q9FIR5|Q9FIR5_ARATH Arabidopsis thaliana genomic DNA, chromosome
           5, P1 clone:MXC17 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 129

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+ +P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115


>tr|Q93W02|Q93W02_ARATH AT5g24690/MXC17_8 (Putative uncharacterized
           protein At5g24690) (Putative uncharacterized protein
           At5g24700) OS=Arabidopsis thaliana GN=At5g24700 PE=2
           SV=1
          Length = 521

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+ +P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115


>tr|Q0WMD6|Q0WMD6_ARATH Putative uncharacterized protein At5g24690
           OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1
          Length = 521

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+ +P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115


>tr|Q0WMB2|Q0WMB2_ARATH Putative uncharacterized protein At5g24690
           OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1
          Length = 521

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+ +P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115


>tr|Q0WL68|Q0WL68_ARATH Putative uncharacterized protein At5g24690
           OS=Arabidopsis thaliana GN=At5g24690 PE=2 SV=1
          Length = 521

 Score = 37.7 bits (86), Expect = 0.56
 Identities = 18/35 (51%), Positives = 25/35 (71%)
 Frame = +2

Query: 422 MAPVMKKGYGAFGGGATLEKSKLDLSQKTSQVAPK 526
           M PVMK  +G+ G   TLEK KLD++QK S+ +P+
Sbjct: 82  MCPVMKGKFGSVGA-VTLEKGKLDMTQKISETSPE 115