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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957767
Clone id TST39A01NGRL0029_D18
Library
Length 618
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_D18. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AAGAAGAAGAAGAGACGCAATGGTTTTCTTCTTCTTGTTCCTCTCTTCGACCTCTTAAGA
TACAGGTAGGCCCTTCTTCCTCTCAAGACGCTTTTGTGGGCACCTTCTTTTACAGGGTTT
CCGCCATGCTTGACGGCCAGGGTTGCCTGCTTCCTGTGCGCCATTTCCACAGCGACAATT
CTCCCGTCATGATCTCGTCTTTGTCAGGTCTCTACCCCACCTGTTGTGCAGAAGCATCTG
CCGAAACCAACCCTAATTCAAACACTAACCCCCTCGCTCTCCAAAGCCCAGAGGCTCTCT
CTTGGTCTCTTGTTGCAGAGGTGGATCGAGAATCTAACCAAGGTGAACTTCTTGACTTCA
ACATTAGCAGGTCTTGCATTGCCTCGCCTCTTCCATTTGAAGAGGCTGACACGACACAGG
CATGTCCGAACATTGGAGTGGTTGCGGAGAAGGGTGCTATATCATCCATTTTTTCAGATT
TCGATTGCTCATCAACTAGCCCAAGCAGATCTGCACTGGTGTTTCATTCCTCGCCTATGC
AGGTGGTTGAGGCAGGCCCTGCACAAGCAGGGAGCAGCTATGTTGAGATTGAAGGAGTGG
TCTCAAGACACTGTCTGC
■■Homology search results ■■ -
sp_hit_id Q62897
Definition sp|Q62897|KCND3_RAT Potassium voltage-gated channel subfamily D member 3 OS=Rattus norvegicus
Align length 58
Score (bit) 33.9
E-value 0.69
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957767|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D18, 5'
         (618 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q62897|KCND3_RAT Potassium voltage-gated channel subfamily D ...    34   0.69 
sp|Q9Z0V1|KCND3_MOUSE Potassium voltage-gated channel subfamily ...    34   0.69 
sp|Q6AZ54|HEMGN_RAT Hemogen OS=Rattus norvegicus GN=Hemgn PE=1 SV=1    33   1.2  
sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homo...    33   1.2  
sp|Q9TTT5|KCND3_RABIT Potassium voltage-gated channel subfamily ...    33   1.5  
sp|Q32MQ0|ZN750_HUMAN Protein ZNF750 OS=Homo sapiens GN=ZNF750 P...    32   2.6  
sp|Q9UK17|KCND3_HUMAN Potassium voltage-gated channel subfamily ...    32   2.6  
sp|Q9JJH7|TRPM5_MOUSE Transient receptor potential cation channe...    32   2.6  
sp|Q9NZQ8|TRPM5_HUMAN Transient receptor potential cation channe...    32   2.6  
sp|A0LSR8|ILVD_ACIC1 Dihydroxy-acid dehydratase OS=Acidothermus ...    31   4.5  
sp|Q62640|GRID1_RAT Glutamate receptor delta-1 subunit OS=Rattus...    31   4.5  
sp|Q9ULK0|GRID1_HUMAN Glutamate receptor delta-1 subunit OS=Homo...    31   4.5  
sp|Q9NY15|STAB1_HUMAN Stabilin-1 OS=Homo sapiens GN=STAB1 PE=1 SV=2    31   5.8  
sp|P45075|LPTC_HAEIN Lipopolysaccharide export system protein lp...    31   5.8  
sp|Q5DU37|ZFY26_MOUSE Zinc finger FYVE domain-containing protein...    30   7.6  
sp|Q8ZPM2|RNFC_SALTY Electron transport complex protein rnfC OS=...    30   7.6  
sp|A9N025|RNFC_SALPB Electron transport complex protein rnfC OS=...    30   7.6  
sp|Q5PIB9|RNFC_SALPA Electron transport complex protein rnfC OS=...    30   7.6  
sp|Q57PI0|RNFC_SALCH Electron transport complex protein rnfC OS=...    30   7.6  
sp|A9MRW8|RNFC_SALAR Electron transport complex protein rnfC OS=...    30   7.6  
sp|Q8IVL1|NAV2_HUMAN Neuron navigator 2 OS=Homo sapiens GN=NAV2 ...    30   9.9  
sp|A6NMD2|GG8L3_HUMAN Golgin subfamily A member 8-like protein 3...    30   9.9  

>sp|Q62897|KCND3_RAT Potassium voltage-gated channel subfamily D
           member 3 OS=Rattus norvegicus GN=Kcnd3 PE=1 SV=2
          Length = 655

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS SGL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 518 QNCMESSMQNYPSTRSP-SLSSHSGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 574


>sp|Q9Z0V1|KCND3_MOUSE Potassium voltage-gated channel subfamily D
           member 3 OS=Mus musculus GN=Kcnd3 PE=1 SV=1
          Length = 655

 Score = 33.9 bits (76), Expect = 0.69
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS SGL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 518 QNCMESSMQNYPSTRSP-SLSSHSGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 574


>sp|Q6AZ54|HEMGN_RAT Hemogen OS=Rattus norvegicus GN=Hemgn PE=1 SV=1
          Length = 514

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 24/94 (25%), Positives = 38/94 (40%)
 Frame = +3

Query: 153 PVRHFHSDNSPVMISSLSGLYPTCCAEASAETNPNSNTNPLALQSPEALSWSLVAEVDRE 332
           PV  +HS   P  ++    L P  C E +   N +S   P  +  PEALS  +  E    
Sbjct: 229 PVPQYHSSKIPQDMTGPEALAPDMCQETTVSQNHSSKV-PQDMAGPEALSLKMCQEPTVL 287

Query: 333 SNQGELLDFNISRSCIASPLPFEEADTTQACPNI 434
                 +  +++R  + S    +E    +A P I
Sbjct: 288 QEHTLKICQDVARPDVLSSKTHQEMTVPKALPCI 321


>sp|Q8VYU4|CCR4F_ARATH Carbon catabolite repressor protein 4 homolog
           6 OS=Arabidopsis thaliana GN=CCR4-6 PE=2 SV=2
          Length = 754

 Score = 33.1 bits (74), Expect = 1.2
 Identities = 22/48 (45%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = -3

Query: 283 WRARGLVFELGLVSADASA-QQVG*RPDKDEIM--TGELSLWKWRTGS 149
           WR   LVFEL L SAD    Q+V    D +E M   G  ++WK RTG+
Sbjct: 216 WRKSKLVFELSLWSADIMCLQEVDKFQDLEEEMKHRGYSAIWKMRTGN 263


>sp|Q9TTT5|KCND3_RABIT Potassium voltage-gated channel subfamily D
           member 3 OS=Oryctolagus cuniculus GN=KCND3 PE=2 SV=1
          Length = 655

 Score = 32.7 bits (73), Expect = 1.5
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS +GL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 518 QNCMESSMQNYPSTRSP-SLSSHAGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 574


>sp|Q32MQ0|ZN750_HUMAN Protein ZNF750 OS=Homo sapiens GN=ZNF750 PE=2
           SV=1
          Length = 723

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 34/161 (21%), Positives = 54/161 (33%), Gaps = 1/161 (0%)
 Frame = +3

Query: 108 FYRVSAMLDGQGCLLP-VRHFHSDNSPVMISSLSGLYPTCCAEASAETNPNSNTNPLALQ 284
           FYR  +     G  LP V     D S  ++   + +YP         ++PN         
Sbjct: 321 FYRPESAFSSYGLRLPPVTGLTRDQSSHLLEEATLVYPASSPSRLNPSDPNRKHVEFESP 380

Query: 285 SPEALSWSLVAEVDRESNQGELLDFNISRSCIASPLPFEEADTTQACPNIGVVAEKGAXX 464
            PEA   S   + D E ++      + +      P P +   T+Q C  +  ++ K A  
Sbjct: 381 IPEAKDSSKAGQRDTEGSKMSPRAGSAATGSPGRPSPTDFMQTSQTCEGLYDLSNKAA-- 438

Query: 465 XXXXXXXXXXXXPSRSALVFHSSPMQVVEAGPAQAGSSYVE 587
                       P   +L       +  E  PAQA  +  E
Sbjct: 439 ----SSALGRLYPPEQSLTAFRPVKKSTECLPAQAAETTAE 475


>sp|Q9UK17|KCND3_HUMAN Potassium voltage-gated channel subfamily D
           member 3 OS=Homo sapiens GN=KCND3 PE=1 SV=3
          Length = 655

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS  GL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 518 QNCMESSMQNYPSTRSP-SLSSHPGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 574


>sp|Q9JJH7|TRPM5_MOUSE Transient receptor potential cation channel
           subfamily M member 5 OS=Mus musculus GN=Trpm5 PE=1 SV=1
          Length = 1158

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 415 HRHVRTLEWLRRRVLYHPFFQI 480
           H H   LEW+ RRVLY P+ QI
Sbjct: 895 HPHDGRLEWIFRRVLYRPYLQI 916


>sp|Q9NZQ8|TRPM5_HUMAN Transient receptor potential cation channel
           subfamily M member 5 OS=Homo sapiens GN=TRPM5 PE=1 SV=1
          Length = 1165

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 415 HRHVRTLEWLRRRVLYHPFFQI 480
           H H   LEW+ RRVLY P+ QI
Sbjct: 896 HPHDGRLEWIFRRVLYRPYLQI 917


>sp|A0LSR8|ILVD_ACIC1 Dihydroxy-acid dehydratase OS=Acidothermus
           cellulolyticus (strain ATCC 43068 / 11B) GN=ilvD PE=3
           SV=1
          Length = 558

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = -3

Query: 352 RSSPWLDSRSTSATRDQERASGLWRARGLVFELGLVSADASAQQVG*RPDKDEIMTGELS 173
           R+ P L  RS   T   ERA+    ARG++  +G+  AD    Q+G     +EI    LS
Sbjct: 2   RAQPDLKPRSRDVTDGLERAA----ARGMLRAVGMTDADWEKPQIGVASSWNEITPCNLS 57

Query: 172 L 170
           L
Sbjct: 58  L 58
tr_hit_id A9JST3
Definition tr|A9JST3|A9JST3_DANRE Wu:fy63c09 protein OS=Danio rerio
Align length 108
Score (bit) 37.7
E-value 0.54
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957767|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_D18, 5'
         (618 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9JST3|A9JST3_DANRE Wu:fy63c09 protein OS=Danio rerio GN=wu:f...    38   0.54 
tr|A8XI72|A8XI72_CAEBR Putative uncharacterized protein OS=Caeno...    36   1.6  
tr|A7P5K3|A7P5K3_VITVI Chromosome chr4 scaffold_6, whole genome ...    36   2.1  
tr|A5BJE8|A5BJE8_VITVI Putative uncharacterized protein OS=Vitis...    36   2.1  
tr|Q2HBX0|Q2HBX0_CHAGB Putative uncharacterized protein OS=Chaet...    36   2.1  
tr|Q11AK2|Q11AK2_MESSB Putative uncharacterized protein OS=Mesor...    35   2.7  
tr|B0DRJ6|B0DRJ6_LACBS Ectomycorrhiza-upregulated binuclear zinc...    35   3.5  
tr|A4NAB6|A4NAB6_HAEIN Putative uncharacterized protein OS=Haemo...    35   4.6  
tr|Q3UH54|Q3UH54_MOUSE Putative uncharacterized protein OS=Mus m...    34   7.8  
tr|B2RUE0|B2RUE0_MOUSE Potassium voltage-gated channel, Shal-rel...    34   7.8  
tr|Q02N43|Q02N43_PSEAB Putative uncharacterized protein OS=Pseud...    34   7.8  
tr|B5EGZ5|B5EGZ5_GEOBB O-antigen polymerase OS=Geobacter bemidji...    34   7.8  
tr|A1CQU0|A1CQU0_ASPCL SPX domain protein OS=Aspergillus clavatu...    34   7.8  

>tr|A9JST3|A9JST3_DANRE Wu:fy63c09 protein OS=Danio rerio
           GN=wu:fy63c09 PE=2 SV=1
          Length = 728

 Score = 37.7 bits (86), Expect = 0.54
 Identities = 35/108 (32%), Positives = 51/108 (47%)
 Frame = -3

Query: 613 QCLETTPSIST*LLPACAGPASTTCIGEE*NTSADLLGLVDEQSKSEKMDDIAPFSATTP 434
           Q LE TP       P   G A T  + E+ N S DLL L   QS ++ +++       TP
Sbjct: 427 QVLENTP-------PGQQGAALTASLSEKRN-SDDLLLLNKHQSPAQVLEN-------TP 471

Query: 433 MFGHACVVSASSNGRGEAMQDLLMLKSRSSPWLDSRSTSATRDQERAS 290
                  ++ASS+ R  +  DLL+L    SP  +SR  +    Q+RA+
Sbjct: 472 PGQQGAALTASSSERKNS-DDLLLLNKHQSPAQESRPENTPPGQQRAA 518


>tr|A8XI72|A8XI72_CAEBR Putative uncharacterized protein
           OS=Caenorhabditis briggsae GN=CBG13566 PE=4 SV=2
          Length = 456

 Score = 36.2 bits (82), Expect = 1.6
 Identities = 22/72 (30%), Positives = 36/72 (50%)
 Frame = +3

Query: 54  LKIQVGPSSSQDAFVGTFFYRVSAMLDGQGCLLPVRHFHSDNSPVMISSLSGLYPTCCAE 233
           L +Q+ PS+   AF+G +F                ++F++DN P++ S+ S   P     
Sbjct: 355 LSLQLMPSN---AFIGNYF---------------TQYFNTDNGPIITSASSTASPPPSVS 396

Query: 234 ASAETNPNSNTN 269
           +SA  NP+S TN
Sbjct: 397 SSAAPNPSSTTN 408


>tr|A7P5K3|A7P5K3_VITVI Chromosome chr4 scaffold_6, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00032567001
           PE=4 SV=1
          Length = 597

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 283 WRARGLVFELGLVSADASA-QQVG*RPDKDE--IMTGELSLWKWRTG 152
           WR R ++FELGL SAD    Q+V    D +E   + G   +WK RTG
Sbjct: 67  WRKRNIIFELGLWSADVMCFQEVDRFGDLEEELKLRGYTGIWKMRTG 113


>tr|A5BJE8|A5BJE8_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_004443 PE=4 SV=1
          Length = 559

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 21/47 (44%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
 Frame = -3

Query: 283 WRARGLVFELGLVSADASA-QQVG*RPDKDE--IMTGELSLWKWRTG 152
           WR R ++FELGL SAD    Q+V    D +E   + G   +WK RTG
Sbjct: 6   WRKRNIIFELGLWSADVMCFQEVDRFGDLEEELKLRGYTGIWKMRTG 52


>tr|Q2HBX0|Q2HBX0_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_02284 PE=4 SV=1
          Length = 596

 Score = 35.8 bits (81), Expect = 2.1
 Identities = 19/67 (28%), Positives = 36/67 (53%)
 Frame = +3

Query: 192 ISSLSGLYPTCCAEASAETNPNSNTNPLALQSPEALSWSLVAEVDRESNQGELLDFNISR 371
           + S++ +  T  A ASA  NPN++ NP  L + +  +++ + +   E ++G+  D N   
Sbjct: 1   MKSVTAILFTLAALASAAPNPNADANPALLATRQTCTYNCLCQ---EDDEGDETDPNTGP 57

Query: 372 SCIASPL 392
            C+A  L
Sbjct: 58  CCVAGTL 64


>tr|Q11AK2|Q11AK2_MESSB Putative uncharacterized protein
           OS=Mesorhizobium sp. (strain BNC1) GN=Meso_4549 PE=3
           SV=1
          Length = 343

 Score = 35.4 bits (80), Expect = 2.7
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 13/104 (12%)
 Frame = -3

Query: 412 VSASSNGRGEAMQDLLMLKSRSSPWLDSRSTSATRDQERASGLWRARGLVFELGLVSADA 233
           V  + +  G  ++D+ +    +   LD+      R QER +G WR R     L L +A A
Sbjct: 35  VPGAQSVAGNGVEDVALAAGAALGTLDA----VVRRQERWAGAWRQR-----LALAAAAA 85

Query: 232 SAQQVG*RPDK-------------DEIMTGELSLWKWRTGSRQP 140
           + +Q G   D+             D++  G   LW WR  + QP
Sbjct: 86  TTKQAGRLEDEAALRDALLLTKGADDVGPGGQMLWAWRRLTAQP 129


>tr|B0DRJ6|B0DRJ6_LACBS Ectomycorrhiza-upregulated binuclear zinc
           transcription factor OS=Laccaria bicolor (strain
           S238N-H82) GN=LACBIDRAFT_393526 PE=4 SV=1
          Length = 517

 Score = 35.0 bits (79), Expect = 3.5
 Identities = 15/36 (41%), Positives = 24/36 (66%)
 Frame = +3

Query: 237 SAETNPNSNTNPLALQSPEALSWSLVAEVDRESNQG 344
           + +T PNS+ +PLA+ +   L W  VAE+ R S++G
Sbjct: 334 NGQTPPNSDKSPLAMHAKAVLLWEKVAEMVRNSDRG 369


>tr|A4NAB6|A4NAB6_HAEIN Putative uncharacterized protein
           OS=Haemophilus influenzae 3655 GN=CGSHi3655_06144 PE=4
           SV=1
          Length = 204

 Score = 34.7 bits (78), Expect = 4.6
 Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
 Frame = +3

Query: 156 VRHFHSDNSPVMISSLSGLYPTCCAEASAETNPNSNTNPLALQSPEALSWSLVAEVDR-E 332
           + H+  +   + I+ L  LYPT   E   E N N N N  + Q     SW L A   R  
Sbjct: 67  IEHYTVNEQTLFIAPLVYLYPTTSNEKEKEKNANQNVNFFSTQ-----SWKLSANQARLT 121

Query: 333 SNQGELLDFNISRSCIASPLPFEEADTTQACPNI 434
            +Q   L+ N+    + S    +  +T  A  N+
Sbjct: 122 KDQILYLEGNVVAQNLTSDSRLQRIETESAVVNL 155


>tr|Q3UH54|Q3UH54_MOUSE Putative uncharacterized protein OS=Mus
           musculus GN=Kcnd3 PE=2 SV=1
          Length = 636

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS SGL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 499 QNCMESSMQNYPSTRSP-SLSSHSGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 555


>tr|B2RUE0|B2RUE0_MOUSE Potassium voltage-gated channel,
           Shal-related family, member 3 (Potassium voltage-gated
           channel, Shal-related family, member 3, isoform CRA_b)
           OS=Mus musculus GN=Kcnd3 PE=2 SV=1
          Length = 655

 Score = 33.9 bits (76), Expect = 7.8
 Identities = 23/58 (39%), Positives = 33/58 (56%), Gaps = 3/58 (5%)
 Frame = +3

Query: 138 QGCL-LPVRHFHSDNSPVMISSLSGLYPTCCAEASAETN--PNSNTNPLALQSPEALS 302
           Q C+   ++++ S  SP  +SS SGL  TCC+  S +T   PNSN     L+S + LS
Sbjct: 518 QNCMESSMQNYPSTRSP-SLSSHSGLTTTCCSRRSKKTTHLPNSNLPATRLRSMQELS 574