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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957805
Clone id TST39A01NGRL0029_F08
Library
Length 611
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_F08. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCTTAAGCTAGCATCAATGGATAACAAAAGACGCTTGCAGGAATGGCAGCAGCAAAGAGC
AGCGAGAGAGGCGGAAAGAGCAGCGGAGAAAGCAGCGAGAGAGGCGGAAAAAGCAGCGAG
AGAGGCGGAAATTTTTGGCTACATGATCGACTCAAACTTGTTGGAAGTTTCTGTTGTCGA
GAGTCTGGTTCAGTCTGGGAAGACACTCTCAGATTTGCTCCAATACCACCCTGACAAGTT
GGTTTCAGAGTTTTATATGGAAGCGCAACATGCCACAGAATTTTTGAGGGGTCGTAGTTC
TAAAAGACCTCGTCTGGATAACGAGGAACCGCATTATGTCAACCAAAGGACTCTCGCCAA
CAACTGCTTCAAGGTTCCGTTTCAAGGAACTGCACATCAGGAACTGCACAACCAGCTTGT
TAAGCATCGCTGCACAATGGCAAGTGATGTTCACTACAGTCCCTATTGCGCCCTTGTACA
ATCATCAGGTATGGGAAAATCAAGAGCATTGATGGAATTGAGTGAGCTGGATGTGTATGT
TTGCTATTGCAGCCTGGCGAGTCACACGGCAACAGCCTTCCCCCCGAGGACAAGTGGTCT
TGCTGATAAGC
■■Homology search results ■■ -
sp_hit_id Q8N5J4
Definition sp|Q8N5J4|SPIC_HUMAN Transcription factor Spi-C OS=Homo sapiens
Align length 65
Score (bit) 34.7
E-value 0.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957805|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F08, 5'
         (611 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8N5J4|SPIC_HUMAN Transcription factor Spi-C OS=Homo sapiens ...    35   0.40 
sp|Q1RML4|SPIC_BOVIN Transcription factor Spi-C OS=Bos taurus GN...    32   2.6  
sp|Q0IIN9|CH077_HUMAN Uncharacterized protein C8orf77 OS=Homo sa...    31   5.7  

>sp|Q8N5J4|SPIC_HUMAN Transcription factor Spi-C OS=Homo sapiens
           GN=SPIC PE=2 SV=1
          Length = 248

 Score = 34.7 bits (78), Expect = 0.40
 Identities = 24/65 (36%), Positives = 31/65 (47%)
 Frame = +2

Query: 218 LQYHPDKLVSEFYMEAQHATEFLRGRSSKRPRLDNEEPHYVNQRTLANNCFKVPFQGTAH 397
           LQY PD      Y+   +    ++G SS    L  EEP Y N RT+ N+     F+G  H
Sbjct: 28  LQYSPDY---RNYLALINHRPHVKGNSSCYGVLPTEEPVY-NWRTVINSAADFYFEGNIH 83

Query: 398 QELHN 412
           Q L N
Sbjct: 84  QSLQN 88


>sp|Q1RML4|SPIC_BOVIN Transcription factor Spi-C OS=Bos taurus
           GN=SPIC PE=2 SV=1
          Length = 248

 Score = 32.0 bits (71), Expect = 2.6
 Identities = 33/98 (33%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = +2

Query: 284 LRGRSSKRPRLDNEEPHYVNQRTLANNCFKVPFQGTAHQEL----HNQLVKHRCTMASDV 451
           +RG S+       EEP Y N RT+ N+   + F+G  HQ L     NQLV+         
Sbjct: 47  IRGNSNSYGVQPAEEPIY-NWRTVINSATDLYFEGNIHQSLQNIPENQLVQP-------- 97

Query: 452 HYSPYCALVQSSGMGKSRALMELSE-LDVYVCYCSLAS 562
                 AL+Q  G GK R  + L E L   +C   +AS
Sbjct: 98  ------ALLQQKG-GKGRKKLRLFEYLHESLCNPEMAS 128


>sp|Q0IIN9|CH077_HUMAN Uncharacterized protein C8orf77 OS=Homo
           sapiens GN=C8orf77 PE=2 SV=1
          Length = 211

 Score = 30.8 bits (68), Expect = 5.7
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -1

Query: 590 SSGGRLLPCDSPGCNSKHTHPAHSIPSMLLIFPYLMIV 477
           SS G   PC  PG +S  T      PS+  +FP+L +V
Sbjct: 50  SSTGGCSPCSGPGPSSPRTSRGALSPSLGRLFPHLQVV 87
tr_hit_id B0E411
Definition tr|B0E411|B0E411_LACBS Predicted protein OS=Laccaria bicolor (strain S238N-H82)
Align length 106
Score (bit) 43.9
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957805|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F08, 5'
         (611 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B0E411|B0E411_LACBS Predicted protein OS=Laccaria bicolor (st...    44   0.007
tr|B0DSN8|B0DSN8_LACBS Predicted protein OS=Laccaria bicolor (st...    43   0.013
tr|B0CU52|B0CU52_LACBS Predicted protein OS=Laccaria bicolor (st...    37   0.90 
tr|B0DCD5|B0DCD5_LACBS Predicted protein OS=Laccaria bicolor (st...    36   1.5  
tr|B8P9W0|B8P9W0_9APHY Predicted protein OS=Postia placenta Mad-...    36   2.0  
tr|B0D7R9|B0D7R9_LACBS Predicted protein OS=Laccaria bicolor (st...    35   2.6  
tr|B0DTU8|B0DTU8_LACBS Predicted protein OS=Laccaria bicolor (st...    35   3.4  
tr|B0CUF9|B0CUF9_LACBS Predicted protein OS=Laccaria bicolor (st...    34   7.6  

>tr|B0E411|B0E411_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_335978 PE=4 SV=1
          Length = 846

 Score = 43.9 bits (102), Expect = 0.007
 Identities = 31/106 (29%), Positives = 52/106 (49%)
 Frame = +2

Query: 290 GRSSKRPRLDNEEPHYVNQRTLANNCFKVPFQGTAHQELHNQLVKHRCTMASDVHYSPYC 469
           G +  RPR + EE  +  Q++     ++  ++G A   L   +  +    ++   Y+ Y 
Sbjct: 112 GLNVVRPRGNQEEQEWATQKS-----WEYQYKGNAAIGLWAHIKVNYNRKSAPQVYANYA 166

Query: 470 ALVQSSGMGKSRALMELSELDVYVCYCSLASHTATAFPPRTSGLAD 607
           ++VQSSGMGKSR   EL++    +      +HT T +PP    L D
Sbjct: 167 SIVQSSGMGKSRMTDELAKTCFVITMNLRGTHT-TGYPPADGALRD 211


>tr|B0DSN8|B0DSN8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_295447 PE=4 SV=1
          Length = 900

 Score = 43.1 bits (100), Expect = 0.013
 Identities = 31/106 (29%), Positives = 52/106 (49%)
 Frame = +2

Query: 290 GRSSKRPRLDNEEPHYVNQRTLANNCFKVPFQGTAHQELHNQLVKHRCTMASDVHYSPYC 469
           G +  RPR + EE  +  Q++     ++  ++G A   L   +  +    ++   Y+ Y 
Sbjct: 120 GLNVVRPRGNKEEQEWATQKS-----WEYRYKGNAAIGLWAHIKVNYNRKSAPQVYANYA 174

Query: 470 ALVQSSGMGKSRALMELSELDVYVCYCSLASHTATAFPPRTSGLAD 607
           ++VQSSGMGKSR   EL++   +V   +L     T +PP    L D
Sbjct: 175 SIVQSSGMGKSRMTDELAK-TCFVITMNLRGMHTTGYPPADGALRD 219


>tr|B0CU52|B0CU52_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_321782 PE=4 SV=1
          Length = 1012

 Score = 37.0 bits (84), Expect = 0.90
 Identities = 22/84 (26%), Positives = 36/84 (42%)
 Frame = +2

Query: 275 TEFLRGRSSKRPRLDNEEPHYVNQRTLANNCFKVPFQGTAHQELHNQLVKHRCTMASDVH 454
           T+ +  +S     ++ E           N+ F   F G     L   L  ++     ++H
Sbjct: 110 TKIINAQSDDGVMIERESQSMEEAAIRLNSSFTAKFHGPVALWLKTGLEIYKKLYNENIH 169

Query: 455 YSPYCALVQSSGMGKSRALMELSE 526
           Y     ++QSSG GKSRA  EL++
Sbjct: 170 YGKAITVLQSSGTGKSRAAAELAK 193


>tr|B0DCD5|B0DCD5_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_294481 PE=4 SV=1
          Length = 1809

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +2

Query: 368 FKVPFQGTAHQELHNQLVKHRCTMASDVHYSPYCALVQSSGMGKSRALMELSELDVYVCY 547
           FK  + G   Q L   L ++      D+HY     ++QSSG GKSR L E++     V +
Sbjct: 180 FKKMYTGPGVQWLKMALPRYMEMYNRDIHYGKTIVVLQSSGTGKSRTLAEMASSSFVVAH 239


>tr|B8P9W0|B8P9W0_9APHY Predicted protein OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_104209 PE=4 SV=1
          Length = 500

 Score = 35.8 bits (81), Expect = 2.0
 Identities = 25/82 (30%), Positives = 44/82 (53%)
 Frame = +2

Query: 338 VNQRTLANNCFKVPFQGTAHQELHNQLVKHRCTMASDVHYSPYCALVQSSGMGKSRALME 517
           VN++    + +  P+ G AH  L   + +   +   +  Y+    L+QSSGMGKSR + E
Sbjct: 209 VNEQKTVRDAWTSPYVGDAHTTLLENVREINSSRGMNP-YANSMPLLQSSGMGKSRTVDE 267

Query: 518 LSELDVYVCYCSLASHTATAFP 583
           L++ D++V   ++    AT +P
Sbjct: 268 LAK-DIFVIPLNV-RREATGYP 287


>tr|B0D7R9|B0D7R9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_326238 PE=4 SV=1
          Length = 561

 Score = 35.4 bits (80), Expect = 2.6
 Identities = 16/29 (55%), Positives = 22/29 (75%)
 Frame = +2

Query: 455 YSPYCALVQSSGMGKSRALMELSELDVYV 541
           Y+ Y A+VQSSGMGKSR + EL++  V +
Sbjct: 262 YANYSAIVQSSGMGKSRTVDELAKTSVVI 290


>tr|B0DTU8|B0DTU8_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_310267 PE=4 SV=1
          Length = 976

 Score = 35.0 bits (79), Expect = 3.4
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = +2

Query: 362 NCFKVPFQGTAHQELHNQLVKHRCTMASDVHYSPYCALVQSSGMGKSRALMELS------ 523
           +CF+  + G   + L   L ++      +VHY     ++QSSG GKS+ + EL+      
Sbjct: 182 HCFQKKYAGPGVRWLEMALPQYMKMYNHNVHYGKTVVVLQSSGTGKSKTMAELACSNPRE 241

Query: 524 ELDVYVCYCSLAS 562
              + VC+  L S
Sbjct: 242 HWGISVCFRGLGS 254


>tr|B0CUF9|B0CUF9_LACBS Predicted protein OS=Laccaria bicolor
           (strain S238N-H82) GN=LACBIDRAFT_305519 PE=4 SV=1
          Length = 840

 Score = 33.9 bits (76), Expect = 7.6
 Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 5/116 (4%)
 Frame = +2

Query: 254 YMEAQHATEF-LRGRSSKRPRLDNEEPHYVNQRTLA--NNCFKVPFQGTAHQELHNQLVK 424
           Y +  H++   + G      R  N  P  V    L   ++ +  PF+G A Q+    L+K
Sbjct: 20  YFDLLHSSHHDILGMYDTGVRFRNSSPSVVLITCLKGLHDAYSKPFRGQAAQDFVAFLLK 79

Query: 425 HRCTMASDVH--YSPYCALVQSSGMGKSRALMELSELDVYVCYCSLASHTATAFPP 586
                  +    Y+    +VQSSG GKSR L E+ E    +  C      AT +PP
Sbjct: 80  ADAEAQRNEKFLYAKMITVVQSSGTGKSRMLTEIGETIFTLPICLRRPGGAT-YPP 134