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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957809
Clone id TST39A01NGRL0029_F12
Library
Length 556
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_F12. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
AGTCAGCGTACTGCTTCACTGTAGAGAGCCTTTGGCGGGTGTGCTATCGGTGTCCGTGTT
GCCTTGTCTACCCGTGCCAGCAGCATGGTGCAGGAGCAGGACCCAAGTCCGCCGCATTTC
TTCCATCAAACTTAGCAGCCATGGATTGTCCACGAATTATTCATGCACACGTGCAGCACG
TTCCCGGAGAGCAGTAATGCCAGTGCGTGCTGATGGTTCCCTATCTGAGCTAACACCTAC
TGTTGCAGCTGTTTATGGAAGCCTTCTTTTGGGTGGTGGTCTCTTTGCCTATACTAGAAG
TTCAAGCAAAGGCTCTTTGTTGGGAGGGTTGAGTGGAGGAGCTTTAATGGGTCTGGTGTA
TCTCTTGTCTTTGGATCCCTATATGAAAGACCTAGGCGAGGCTATCGGGTTCGGTACCGC
TCTCCTTTTTGTAGCTGTATTTGGTATTCGTTTTGCTGCAACAAAGAAGGTATTTCCGGC
AGCCCCATTGTTGTTGGTAAGCGTGGTTGCTTCAGCAGTTTTCGTGGGTGCCTATATACA
GGATAGAGTCTGAAAA
■■Homology search results ■■ -
sp_hit_id Q66IV1
Definition sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog OS=Xenopus laevis
Align length 34
Score (bit) 30.4
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957809|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F12, 5'
         (556 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog OS...    30   6.1  
sp|Q8VEA6|CRDL2_MOUSE Chordin-like protein 2 OS=Mus musculus GN=...    30   7.9  

>sp|Q66IV1|CK009_XENLA Uncharacterized protein C11orf9 homolog
           OS=Xenopus laevis PE=2 SV=1
          Length = 1092

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 97  QDPSPPHFFHQT*QPWIVHELFMHTCSTFPESSN 198
           Q P PPH  HQ   P +  EL+M   S  P+  N
Sbjct: 200 QGPLPPHSIHQQHYPSMQRELYMKVESMMPQYQN 233


>sp|Q8VEA6|CRDL2_MOUSE Chordin-like protein 2 OS=Mus musculus
           GN=Chrdl2 PE=1 SV=1
          Length = 426

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 42  CYRCPCCLVYPCQQHGAGAGPKSAAFLPSNLAAMDCPRIIHAHVQHVPGE 191
           C+R  C   YPC Q    AG K     P + A  D   +I      VPG+
Sbjct: 285 CHRVTCPTQYPCSQPKKVAG-KCCKICPEDEAEDDHSEVISTRCPKVPGQ 333
tr_hit_id B7FAK3
Definition tr|B7FAK3|B7FAK3_ORYSJ cDNA, clone: J100080N01, full insert sequence OS=Oryza sativa subsp. japonica
Align length 127
Score (bit) 79.3
E-value 1.0e-13
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957809|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F12, 5'
         (556 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FAK3|B7FAK3_ORYSJ cDNA, clone: J100080N01, full insert sequ...    79   1e-13
tr|Q01KJ0|Q01KJ0_ORYSA H0404F02.7 protein OS=Oryza sativa GN=H04...    78   3e-13
tr|A2XWP4|A2XWP4_ORYSI Putative uncharacterized protein OS=Oryza...    78   3e-13
tr|Q8LKP7|Q8LKP7_SAUME Putative uncharacterized protein OS=Sauss...    74   4e-12
tr|A9SPY7|A9SPY7_PHYPA Predicted protein OS=Physcomitrella paten...    73   9e-12
tr|A9PIA0|A9PIA0_POPTR Putative uncharacterized protein OS=Popul...    72   3e-11
tr|Q7XQ86|Q7XQ86_ORYSJ Os04g0577800 protein OS=Oryza sativa subs...    70   8e-11
tr|Q9C880|Q9C880_ARATH Protein kinase, putative OS=Arabidopsis t...    69   2e-10
tr|Q8LPG1|Q8LPG1_ARATH Protein kinase, putative OS=Arabidopsis t...    69   2e-10
tr|B6TKU2|B6TKU2_MAIZE Protein kinase OS=Zea mays PE=2 SV=1            67   5e-10
tr|A7QIZ3|A7QIZ3_VITVI Chromosome chr2 scaffold_105, whole genom...    66   1e-09
tr|A3AWN5|A3AWN5_ORYSJ Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|Q54R79|Q54R79_DICDI Putative uncharacterized protein OS=Dicty...    35   2.0  
tr|B2FIF6|B2FIF6_STRMK Putative uncharacterized protein OS=Steno...    34   4.6  
tr|B7QIL4|B7QIL4_IXOSC Putative uncharacterized protein OS=Ixode...    34   4.6  
tr|B4M181|B4M181_DROVI GJ24175 OS=Drosophila virilis GN=GJ24175 ...    34   6.0  

>tr|B7FAK3|B7FAK3_ORYSJ cDNA, clone: J100080N01, full insert
           sequence OS=Oryza sativa subsp. japonica PE=2 SV=1
          Length = 160

 Score = 79.3 bits (194), Expect = 1e-13
 Identities = 49/127 (38%), Positives = 62/127 (48%)
 Frame = +2

Query: 170 RAARSRRAVMPVRADGSLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXX 349
           R  RSRR  + +R   ++SEL PT +A YG+LLLGGG FAY R                 
Sbjct: 36  RPGRSRRRAL-LRCS-AVSELAPTASAAYGALLLGGGAFAYVRSGSKGSIFGGLSGSALM 93

Query: 350 XXVYLLSLDPYMKDLGEAIGFGTALLFVAVFGIRFAATKKXXXXXXXXXXXXXXXXXXXG 529
              Y L   P  K LG+A+GFG+A LF +VFGIR   T+K                    
Sbjct: 94  GIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGALGVFYS 153

Query: 530 AYIQDRV 550
           AY+QD+V
Sbjct: 154 AYMQDKV 160


>tr|Q01KJ0|Q01KJ0_ORYSA H0404F02.7 protein OS=Oryza sativa
           GN=H0404F02.7 PE=4 SV=1
          Length = 160

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 49/127 (38%), Positives = 61/127 (48%)
 Frame = +2

Query: 170 RAARSRRAVMPVRADGSLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXX 349
           R  RSRR  + +R   ++SEL PT +A YG LLLGGG FAY R                 
Sbjct: 36  RPGRSRRRAL-LRCS-AVSELAPTASAAYGVLLLGGGAFAYVRSGSKGSIFGGLSGSALM 93

Query: 350 XXVYLLSLDPYMKDLGEAIGFGTALLFVAVFGIRFAATKKXXXXXXXXXXXXXXXXXXXG 529
              Y L   P  K LG+A+GFG+A LF +VFGIR   T+K                    
Sbjct: 94  GIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGALGVFYS 153

Query: 530 AYIQDRV 550
           AY+QD+V
Sbjct: 154 AYMQDKV 160


>tr|A2XWP4|A2XWP4_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_17074 PE=4 SV=1
          Length = 160

 Score = 78.2 bits (191), Expect = 3e-13
 Identities = 49/127 (38%), Positives = 61/127 (48%)
 Frame = +2

Query: 170 RAARSRRAVMPVRADGSLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXX 349
           R  RSRR  + +R   ++SEL PT +A YG LLLGGG FAY R                 
Sbjct: 36  RPGRSRRRAL-LRCS-AVSELAPTASAAYGVLLLGGGAFAYVRSGSKGSIFGGLSGSALM 93

Query: 350 XXVYLLSLDPYMKDLGEAIGFGTALLFVAVFGIRFAATKKXXXXXXXXXXXXXXXXXXXG 529
              Y L   P  K LG+A+GFG+A LF +VFGIR   T+K                    
Sbjct: 94  GIAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLLLVLSLGALGVFYS 153

Query: 530 AYIQDRV 550
           AY+QD+V
Sbjct: 154 AYMQDKV 160


>tr|Q8LKP7|Q8LKP7_SAUME Putative uncharacterized protein
           OS=Saussurea medusa PE=2 SV=1
          Length = 189

 Score = 74.3 bits (181), Expect = 4e-12
 Identities = 46/154 (29%), Positives = 66/154 (42%)
 Frame = +2

Query: 89  CRSRTQVRRISSIKLSSHGLSTNYSCTRAARSRRAVMPVRADGSLSELTPTVAAVYGSLL 268
           C+ R ++RR+SS   SS   +T+   ++  +               +  P  +A Y  LL
Sbjct: 51  CKIRQRLRRLSSFPSSSRSFTTHLCKSQLVQ---------------DFAPAASAGYAVLL 95

Query: 269 LGGGLFAYTRXXXXXXXXXXXXXXXXXXXVYLLSLDPYMKDLGEAIGFGTALLFVAVFGI 448
           LGGGLFAY +                    Y L   P  K+ G+A+ FG +LLF  +FGI
Sbjct: 96  LGGGLFAYNKSGSKGSLFGGLTGAALLSIAYYLMQAPETKETGDALAFGASLLFACIFGI 155

Query: 449 RFAATKKXXXXXXXXXXXXXXXXXXXGAYIQDRV 550
           R AAT+K                    AY+QDR+
Sbjct: 156 RLAATRKVIPAGFLLGLSISLTAVTYSAYLQDRI 189


>tr|A9SPY7|A9SPY7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_166098 PE=4 SV=1
          Length = 221

 Score = 73.2 bits (178), Expect = 9e-12
 Identities = 38/84 (45%), Positives = 48/84 (57%)
 Frame = +2

Query: 218 SLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXXXXVYLLSLDPYMKDLG 397
           SL++  P  AAVYG+ LLGGGL+AYTR                    + L   P  +DLG
Sbjct: 71  SLNDYAPLTAAVYGASLLGGGLYAYTRTGSTSSLGGGITGGIALGVAFFLMQVPETRDLG 130

Query: 398 EAIGFGTALLFVAVFGIRFAATKK 469
           EA+GFG A+LF A+F IR A+T K
Sbjct: 131 EAVGFGAAVLFAAIFAIRLASTGK 154


>tr|A9PIA0|A9PIA0_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 175

 Score = 71.6 bits (174), Expect = 3e-11
 Identities = 42/138 (30%), Positives = 64/138 (46%), Gaps = 7/138 (5%)
 Frame = +2

Query: 152 TNYSCTRAARSRRAVMPVRADG-------SLSELTPTVAAVYGSLLLGGGLFAYTRXXXX 310
           +++SC R  R   ++    + G        L+++ P  +A YG +LLGGGLFA+++    
Sbjct: 31  SSFSCLRNRRRSNSIATSFSRGRSLGCKCQLADIAPVTSAAYGVILLGGGLFAFSKSGSK 90

Query: 311 XXXXXXXXXXXXXXXVYLLSLDPYMKDLGEAIGFGTALLFVAVFGIRFAATKKXXXXXXX 490
                           Y L   P  K +G+++GFG+A LF +VFGIR AAT+K       
Sbjct: 91  GSLFGGLTGAAVMGTAYFLMQAPETKAIGDSLGFGSAFLFSSVFGIRLAATQKLIPSGLL 150

Query: 491 XXXXXXXXXXXXGAYIQD 544
                        AY+QD
Sbjct: 151 LGLSICALAVFIAAYLQD 168


>tr|Q7XQ86|Q7XQ86_ORYSJ Os04g0577800 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0011J08.3 PE=4 SV=1
          Length = 173

 Score = 70.1 bits (170), Expect = 8e-11
 Identities = 49/140 (35%), Positives = 62/140 (44%), Gaps = 13/140 (9%)
 Frame = +2

Query: 170 RAARSRRAVMPVRADGSLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXX 349
           R  RSRR  + +R   ++SEL PT +A YG+LLLGGG FAY R                 
Sbjct: 36  RPGRSRRRAL-LRCS-AVSELAPTASAAYGALLLGGGAFAYVRSGSKGSIFGGLSGSALM 93

Query: 350 XX-------------VYLLSLDPYMKDLGEAIGFGTALLFVAVFGIRFAATKKXXXXXXX 490
                           Y L   P  K LG+A+GFG+A LF +VFGIR   T+K       
Sbjct: 94  GISFIGLLGGQNRILAYYLMQSPETKALGDAVGFGSAFLFASVFGIRLYNTRKLVPSGLL 153

Query: 491 XXXXXXXXXXXXGAYIQDRV 550
                        AY+QD+V
Sbjct: 154 LVLSLGALGVFYSAYMQDKV 173


>tr|Q9C880|Q9C880_ARATH Protein kinase, putative OS=Arabidopsis
           thaliana GN=T16O9.6 PE=4 SV=1
          Length = 528

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/83 (43%), Positives = 46/83 (55%)
 Frame = +2

Query: 221 LSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXXXXVYLLSLDPYMKDLGE 400
           LSEL P V+A YG LLLGGGLFAY++                    Y L+  P  + LG+
Sbjct: 407 LSELAPVVSATYGVLLLGGGLFAYSKSGSKGSLFGGLTGSVLMASAYFLTKSPETRVLGD 466

Query: 401 AIGFGTALLFVAVFGIRFAATKK 469
            IG G A LF +VFG R A+++K
Sbjct: 467 TIGLGAAFLFSSVFGFRLASSRK 489


>tr|Q8LPG1|Q8LPG1_ARATH Protein kinase, putative OS=Arabidopsis
           thaliana GN=At1g33260 PE=2 SV=1
          Length = 177

 Score = 68.9 bits (167), Expect = 2e-10
 Identities = 36/83 (43%), Positives = 46/83 (55%)
 Frame = +2

Query: 221 LSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXXXXVYLLSLDPYMKDLGE 400
           LSEL P V+A YG LLLGGGLFAY++                    Y L+  P  + LG+
Sbjct: 56  LSELAPVVSATYGVLLLGGGLFAYSKSGSKGSLFGGLTGSVLMASAYFLTKSPETRVLGD 115

Query: 401 AIGFGTALLFVAVFGIRFAATKK 469
            IG G A LF +VFG R A+++K
Sbjct: 116 TIGLGAAFLFSSVFGFRLASSRK 138


>tr|B6TKU2|B6TKU2_MAIZE Protein kinase OS=Zea mays PE=2 SV=1
          Length = 153

 Score = 67.4 bits (163), Expect = 5e-10
 Identities = 38/111 (34%), Positives = 49/111 (44%)
 Frame = +2

Query: 218 SLSELTPTVAAVYGSLLLGGGLFAYTRXXXXXXXXXXXXXXXXXXXVYLLSLDPYMKDLG 397
           ++SE+ P  +A YG LLLGGG FAY R                    Y L   P     G
Sbjct: 43  AVSEIAPAASAAYGVLLLGGGAFAYARSGSKGSIYGGLAGAALMGAAYYLMQSPETMAAG 102

Query: 398 EAIGFGTALLFVAVFGIRFAATKKXXXXXXXXXXXXXXXXXXXGAYIQDRV 550
           +A+GFG+A LF  VFGIR   ++K                    AY+QD+V
Sbjct: 103 DAVGFGSAFLFACVFGIRLYNSRKLVPSGLLLALSLGALGVFYSAYLQDKV 153