NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957811
Clone id TST39A01NGRL0029_F14
Library
Length 647
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_F14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
TCTTCACGGGATCGTCGGCCCGCTTGCAGGCGATCCTGTGTTCTCTTGGTTGTAGCAAAG
GGATCTGTAAGGCCTGCCGCTGCTTTAGGGTTTTCCCGATCCCTGCTTCTTTATTCCTGC
CATATGTGACAACAGGGGGCTAATCAGCGCTGTCCATTTATCAGTTGGTCGGTGATCTGA
CACTGCTTTTAGTTGAATCGGCAACAGTGTGATGTCTCACGCCCTTGGCGACACCACTCC
TAATGTGGTGACCCTGGTTCGTCATCTTGGGCCCAAAGTGCACAAGTCTTGTACTGAATG
GGTACAGCATAGCCTTTCCTTGCAACGCTATAAAGGCTGGGCCATGTCTACGGTGATCTA
TGGAATTGGATCTGTCGAAGCAACCATATCAAGCCAGATTTCAATACATGATGCAGTTGC
ACCGCCGTCTGTGAGAACTGGAAGCTACAGGGTGGCCCCAAGAATGTTGGCATACAAGGC
AAGGCGCACCAAGAGGCGATCTCACAGAGGTGGGGGAGATGGGGATGATGAAGGGCCTGA
GTGGGATGAAGGAGGGTTTGGTGGCAGCGGGGGCTGGGGCGGAAACGACAACGGTCGGGG
CGGGAATGATTACTGGGGTGCAAGCTGGAATGAAGATGGATGGTGGT
■■Homology search results ■■ -
sp_hit_id Q7NTK7
Definition sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
Align length 60
Score (bit) 30.8
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957811|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F14, 5'
         (647 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violace...    31   6.4  
sp|Q8XVI2|MURE_RALSO UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--...    30   8.3  

>sp|Q7NTK7|KCY_CHRVO Cytidylate kinase OS=Chromobacterium violaceum
           GN=cmk PE=3 SV=1
          Length = 222

 Score = 30.8 bits (68), Expect = 6.4
 Identities = 16/60 (26%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = -1

Query: 434 SQTAVQL-HHVLKSGLIWLLRQIQFHRSP*TWPSLYSVARKGYAVPIQYKTCALWAQDDE 258
           +Q A +L  H L SG ++ L  +   R    W    ++AR   A+P+++   A+W + ++
Sbjct: 21  AQVAARLAFHYLDSGSLYRLLALHARRRGIAWDDEPALARAAAALPVEFSDGAVWLEGND 80


>sp|Q8XVI2|MURE_RALSO
           UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
           6-diaminopimelate ligase OS=Ralstonia solanacearum
           GN=murE PE=3 SV=1
          Length = 514

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 18/78 (23%), Positives = 37/78 (47%)
 Frame = +2

Query: 239 PNVVTLVRHLGPKVHKSCTEWVQHSLSLQRYKGWAMSTVIYGIGSVEATISSQISIHDAV 418
           P+ + ++   G     SC++W+  +LS Q  +   + T+  G G V+A +++  +  DA+
Sbjct: 115 PDALRVIGVTGTNGKTSCSQWIAQALSRQGERCAVVGTL--GTGFVDALVATGFTTPDAI 172

Query: 419 APPSVRTGSYRVAPRMLA 472
                    +R   R +A
Sbjct: 173 QLQHSLADLHRAGARAVA 190
tr_hit_id A9SVR8
Definition tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 42
Score (bit) 38.9
E-value 0.27
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957811|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_F14, 5'
         (647 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.27 
tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942...    37   0.79 
tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family OS...    37   1.3  
tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus G...    37   1.3  
tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae GN...    37   1.3  
tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis...    35   3.0  
tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (s...    35   5.1  
tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic OS=Pros...    35   5.1  
tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medic...    34   6.7  
tr|Q31EB0|Q31EB0_THICR P-type ATPase (P-ATPase) superfamily cati...    34   8.7  

>tr|A9SVR8|A9SVR8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_84628 PE=4 SV=1
          Length = 369

 Score = 38.9 bits (89), Expect = 0.27
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = +2

Query: 374 VEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 499
           V A +SS   + DA A P VR   Y++AP  L  KAR++++R
Sbjct: 106 VVAAVSSGAPVQDATAAPPVRRNCYQLAPSTLTLKARKSRKR 147


>tr|B4R3L9|B4R3L9_DROSI GD15942 OS=Drosophila simulans GN=GD15942
           PE=4 SV=1
          Length = 426

 Score = 37.4 bits (85), Expect = 0.79
 Identities = 18/42 (42%), Positives = 26/42 (61%)
 Frame = -2

Query: 556 PSFIPLRPFIIPISPTSVRSPLGAPCLVCQHSWGHPVASSSH 431
           P  +P+RP ++P++P ++R  L  PC  C HS   P AS SH
Sbjct: 39  PMRVPVRPQLLPVNPLAMRRHLPRPC--CPHSTSQP-ASDSH 77


>tr|B1MJ73|B1MJ73_MYCA9 Putative membrane protein, MmpL family
           OS=Mycobacterium abscessus (strain ATCC 19977 / DSM
           44196) GN=MAB_0937c PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -2

Query: 367 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 191
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 190 KSSVRSPT 167
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9U8|A5A9U8_MYCAB MmpL protein OS=Mycobacterium abscessus
           GN=mmpL PE=4 SV=1
          Length = 1002

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -2

Query: 367 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 191
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 190 KSSVRSPT 167
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5A9S0|A5A9S0_MYCCH MmpL protein OS=Mycobacterium chelonae
           GN=mmpL PE=4 SV=1
          Length = 1006

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
 Frame = -2

Query: 367 NSIDHRRHGPAFIALQGKAMLYPFSTRLVHFGPKMTNQGHHIRSGVAKGVR-HHTVADST 191
           N+ D +R   AFI+  G ++ Y   T+L  F P+  +Q + I S VAKG + + T+AD+T
Sbjct: 739 NNPDFQRAAKAFISPDGHSVRYLVQTKLNPFSPEAMDQVNQI-SDVAKGAQPNTTLADAT 797

Query: 190 KSSVRSPT 167
            S    PT
Sbjct: 798 ISMGGFPT 805


>tr|A5AMS3|A5AMS3_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_012018 PE=4 SV=1
          Length = 347

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 19/39 (48%), Positives = 25/39 (64%)
 Frame = +2

Query: 386 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRRS 502
           IS+ I   DA+APP VR+ S + A R    + RRT+RRS
Sbjct: 86  ISAMIFPVDALAPPPVRSNSCKTARRTSLRRKRRTRRRS 124


>tr|A9GTY9|A9GTY9_SORC5 Sensor protein OS=Sorangium cellulosum (strain
            So ce56) GN=sce6844 PE=4 SV=1
          Length = 1716

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 1/81 (1%)
 Frame = -1

Query: 536  ALHHPHLPHLCEIASWCALPCMPTFLGP-PCSFQFSQTAVQLHHVLKSGLIWLLRQIQFH 360
            +L H H      + S C    M + LG  PC+FQFS+ A++L+   KS    L  ++ FH
Sbjct: 921  SLQHGHAEESSFVYS-CYAAVMVSILGDVPCAFQFSEMALRLNEKFKSVTAMLKGRLLFH 979

Query: 359  RSP*TWPSLYSVARKGYAVPI 297
             +      + S+  + YA  I
Sbjct: 980  HA-----GVISIWHRHYATSI 995


>tr|A4SE88|A4SE88_PROVI Lytic transglycosylase, catalytic
           OS=Prosthecochloris vibrioformis (strain DSM 265)
           GN=Cvib_0782 PE=3 SV=1
          Length = 503

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
 Frame = +2

Query: 308 HSLSLQRYKGW---AMSTVIYGIGSVEATISSQISIHDAVAPPSVRTGSYRVAPRMLAYK 478
           H L L ++      A+ T +Y   S+    SS ++  ++V P S+R     VAPR+L+YK
Sbjct: 341 HELRLPKHHATSFAAVETRLYDALSIPVPDSSAVA--ESVTPDSIRVSFVAVAPRLLSYK 398

Query: 479 ARR 487
            +R
Sbjct: 399 VKR 401


>tr|B7FGK2|B7FGK2_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 179

 Score = 34.3 bits (77), Expect = 6.7
 Identities = 17/38 (44%), Positives = 24/38 (63%)
 Frame = +2

Query: 386 ISSQISIHDAVAPPSVRTGSYRVAPRMLAYKARRTKRR 499
           IS+ I   DAVAPP V+  + R+  R L  + RRT+R+
Sbjct: 34  ISAMIHPCDAVAPPPVKPSTRRIPRRTLTRRKRRTRRK 71


>tr|Q31EB0|Q31EB0_THICR P-type ATPase (P-ATPase) superfamily cation
           transporter OS=Thiomicrospira crunogena (strain XCL-2)
           GN=Tcr_1923 PE=3 SV=1
          Length = 898

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -1

Query: 584 FRPSPRCHQTLLHPTQALHHPHLPHLCEIASWCA 483
           +RP         HP    HHPHL HL E+++ C+
Sbjct: 355 YRPIGEFSDAQQHPINPRHHPHLKHLLEMSALCS 388