| DK957847 |
| Clone id |
TST39A01NGRL0029_H03 |
| Library |
TST39 |
| Length |
619 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_H03. 5' end sequence. |
| Accession |
DK957847 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL3671Contig1 |
| Sequence |
AGGCTACGTAGTGTTCAAGTCAGGCCCGCGGTATGCTGGAGTTGCGGAATGGCAGAGCAG GAGGTGGAAATCCGTACTCTAGACGGGCGCAGTACAAAAGTGCAGGTGAAGGGAGACGAG ACTGTGGGCAGCCTCAAGAGACTTTTGCACCAACAGAGCTTGCTATGCGCTCCAACTCTT CCTTTCCATCTCTTCCTCCGGGGAATAAAGCTTGGTGTTAGCAAGTCAATAGAGTCTCTT TCTATGCAAGGTGGCGATTTTATGGTGCTTATGCCCTACTCAAGGGAAAAACAGTCTGCT GCAAATCTCTGTCAAAGTGGTTCCAGTATCGGAGGGTGTGAAAGTTTTAGTAGTGGTGGA GAAGTTTCCAGTGAAGGCCTTTCAAGTAATGATAGTAGGACTCTGGAAGAGCCCTATGGT GTTTGTGATCTACCCGTAAGCAAGGAAGCTGAAAAGGGTTCACACCATACTGTGCTGAAT GTTGAAGACTCTGTTTGGAATGAAATTGCGGCTGACCTTTGTGAATGGAAAGCTTCGGTT TCTCTCGATGGTTTGGATCCAGGCTTTGATGGACAATTTGAAGCAAGGGAGTTTAGCACC TCTGATGTTGGACATTTAG |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
Q04836 |
| Definition |
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana |
| Align length |
56 |
| Score (bit) |
35.4 |
| E-value |
0.24 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957847|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_H03, 5' (619 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=... 35 0.24 sp|Q76NI1|VKIND_HUMAN Protein very KIND OS=Homo sapiens GN=KNDC1... 32 2.6 sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=... 31 5.8 sp|Q5EB28|MIDN_XENTR Midnolin OS=Xenopus tropicalis GN=midn PE=2... 31 5.9 sp|Q6DFR5|MYADM_XENTR Myeloid-associated differentiation marker ... 30 7.6 sp|Q63ZU3|MYADM_XENLA Myeloid-associated differentiation marker ... 30 7.6 sp|Q7ZWN4|MIDNA_XENLA Midnolin-A OS=Xenopus laevis GN=midn-A PE=... 30 7.7 sp|O69064|HTXE_PSEST Putative phosphite transport system permeas... 30 9.9 sp|Q5T9C2|F102A_HUMAN Protein FAM102A OS=Homo sapiens GN=FAM102A... 30 9.9 sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1 30 9.9
>sp|Q04836|ROC3_ARATH 31 kDa ribonucleoprotein, chloroplastic OS=Arabidopsis thaliana GN=RBP31 PE=1 SV=1 Length = 329
Score = 35.4 bits (80), Expect = 0.24 Identities = 24/56 (42%), Positives = 28/56 (50%) Frame = -3
Query: 524 SQRSAAISFQTESSTFSTVWCEPFSASLLTGRSQTP*GSSRVLLSLLERPSLETSP 357 S S S + SST S+ S SLLTGR P SRV LSL + L+ SP Sbjct: 18 SSSSTIFSHPSISSTISSSRIRSSSVSLLTGRINLPLSFSRVSLSLKTKTHLKKSP 73
>sp|Q76NI1|VKIND_HUMAN Protein very KIND OS=Homo sapiens GN=KNDC1 PE=2 SV=2 Length = 1749
Score = 32.0 bits (71), Expect = 2.6 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 7/54 (12%) Frame = +3
Query: 78 SRRAQYKSAGEGRRDCGQPQETFAPTELAMRSNSSFPSLPPG-------NKAWC 218 + RAQ AGE RR G + A T LA RS P+L PG + WC Sbjct: 1042 AERAQQPEAGEDRRPAGGASDVEAVTRLA-RSKGVGPALSPGPAGFQSCSPGWC 1094
>sp|Q8BRH4|MLL3_MOUSE Histone-lysine N-methyltransferase MLL3 OS=Mus musculus GN=Mll3 PE=2 SV=2 Length = 4903
Score = 30.8 bits (68), Expect = 5.8 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 10/108 (9%) Frame = -3
Query: 611 PTSEVLNSLASNCPSKPGS-----KPSRETEAFHSQRSAAISFQTESSTFSTVWCEPFSA 447 P S V++ ++ P G+ KPS T+AF QR + S T + + PF Sbjct: 1981 PRSPVISEQSTKGPLTTGTSDHFTKPSPRTDAFQRQR-LPDPYAGPSLTPAPLGNGPFKT 2039
Query: 446 SLLTGRSQTP*G-----SSRVLLSLLERPSLETSPPLLKLSHPPILEP 318 L SQ P G S R+ + ERP+L T P+ SH +P Sbjct: 2040 PLHPPPSQDPYGSVSQTSRRLSVDPYERPAL-TPRPVDNFSHSQSNDP 2086
>sp|Q5EB28|MIDN_XENTR Midnolin OS=Xenopus tropicalis GN=midn PE=2 SV=1 Length = 453
Score = 30.8 bits (68), Expect = 5.9 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Frame = +1
Query: 13 VQVRPAVCWSCGMAEQE----VEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTL 180 ++ +P+V SC +E + I++ G ++ V DETV LKR + Q+ L P Sbjct: 1 MEQQPSVPRSCTNVARETPMNLNIQSTTGTRYELSVPPDETVDGLKRRISQR--LKVPKE 58
Query: 181 PFHLFLRGIKLGVSKSIESLSMQGGDFMVLMP 276 L R +L K ++ L + G + L+P Sbjct: 59 RLTLLHRETRLSSGK-LQDLGISDGSRLTLLP 89
>sp|Q6DFR5|MYADM_XENTR Myeloid-associated differentiation marker homolog OS=Xenopus tropicalis GN=myadm PE=2 SV=1 Length = 307
Score = 30.4 bits (67), Expect = 7.6 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -3
Query: 269 STIKSPPCIERDS---IDLLTPSFIPRRKRWKGRVGAHSKLCWC 147 ST+KSP I R +T S + RW GR+G CWC Sbjct: 14 STLKSPVGIVRILEVIFACVTFSLVVHTGRWGGRIGDLCMFCWC 57
>sp|Q63ZU3|MYADM_XENLA Myeloid-associated differentiation marker homolog OS=Xenopus laevis GN=myadm PE=2 SV=1 Length = 307
Score = 30.4 bits (67), Expect = 7.6 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 3/44 (6%) Frame = -3
Query: 269 STIKSPPCIERDS---IDLLTPSFIPRRKRWKGRVGAHSKLCWC 147 ST+KSP I R +T S + RW GR+G CWC Sbjct: 14 STLKSPVGILRILEVIFACVTFSLVVHTGRWTGRIGDLCMFCWC 57
>sp|Q7ZWN4|MIDNA_XENLA Midnolin-A OS=Xenopus laevis GN=midn-A PE=2 SV=1 Length = 453
Score = 30.4 bits (67), Expect = 7.7 Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%) Frame = +1
Query: 13 VQVRPAVCWSCGMAEQE----VEIRTLDGRSTKVQVKGDETVGSLKRLLHQQSLLCAPTL 180 ++ +P+V SC +E + I++ G ++ V DETV LKR + Q+ L P Sbjct: 1 MEQQPSVPRSCTNVARETPMNLNIQSTTGTRYELSVPPDETVDGLKRRISQR--LKVPKD 58
Query: 181 PFHLFLRGIKLGVSKSIESLSMQGGDFMVLMP 276 L R +L K ++ L + G + L+P Sbjct: 59 RLTLLHRETRLSSGK-LQDLGISDGSRLTLLP 89
>sp|O69064|HTXE_PSEST Putative phosphite transport system permease protein htxE OS=Pseudomonas stutzeri GN=htxE PE=3 SV=1 Length = 261
Score = 30.0 bits (66), Expect = 9.9 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -3
Query: 209 FIPRRKRWKGRVGAHSKLCWCKSLLRL--PTVSSPFTCTF 96 FI + W+ R GA S CWC+ R+ P +SP T+ Sbjct: 67 FIKMIETWRLRCGARSCRCWCRFPWRISRPATTSPNRFTY 106
>sp|Q5T9C2|F102A_HUMAN Protein FAM102A OS=Homo sapiens GN=FAM102A PE=2 SV=2 Length = 384
Score = 30.0 bits (66), Expect = 9.9 Identities = 23/64 (35%), Positives = 30/64 (46%), Gaps = 3/64 (4%) Frame = -3
Query: 587 LASNCPSKPGSKPSRETEAFHS---QRSAAISFQTESSTFSTVWCEPFSASLLTGRSQTP 417 L+S P +P S E FHS + S+ S Q++ S +ST S S LT R T Sbjct: 203 LSSGLPEEPDQNLSSPEEVFHSGHSRNSSYASQQSKISGYSTEHSRSSSLSDLTHRRNTS 262
Query: 416 *GSS 405 SS Sbjct: 263 TSSS 266
>sp|Q7ZW34|CNTN5_DANRE Contactin-5 OS=Danio rerio GN=cntn5 PE=2 SV=1 Length = 1056
Score = 30.0 bits (66), Expect = 9.9 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3
Query: 90 QYKSAGEGRRDCGQPQETFAPTELAMRSNSSFPSLPPGNKAWC*QVNRVS 239 QY + +G GQ + T + + + + PSLPPGN W + N VS Sbjct: 901 QYLVSVKGFNSAGQGPSS---TAVKISTKKNAPSLPPGNLMWIQEGNNVS 947
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
Q69J41 |
| Definition |
tr|Q69J41|Q69J41_ORYSJ ATP-dependent RNA helicase-like protein OS=Oryza sativa subsp. japonica |
| Align length |
174 |
| Score (bit) |
62.4 |
| E-value |
2.0e-08 |
| Report |
 |