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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957858
Clone id TST39A01NGRL0029_H14
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_H14. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTTGTTGGTGGGCATCCGCTGGCGTGTTTATATGTGCACTCTCTCTGCATACGCCTCGCA
GAGACAAATTTGCATGCCACTAACCCGGGCAGATTTCTTGGCTCCAAGAAGTGGTTGAAA
CTGCCTGCGTTACGTCTTCTGTGAGCCTGCTGCTCCACAATTCCAAGCTTGCTTTTTGCA
ATTCAGCCTGATTTCTTGTTTTGGGTGCCCGTCAAGAAGATTTTAGGGTGCTTAGCCGCA
AATTAAGCAGTTGACGCAACCAAAATTACGAAATTTGGCAGGATTTGGGCTTCGCTTGCC
TAAGAACAGGCTCCGACATGGTAAGAATCTGCATTCTTGGCTCATGAAGAAGGTAGAGAC
ATGGGCTGCGGTTTTAGCAGGCACGAAGTGGCAGAGGAGCCTTTACCCAGCCCCAAAAGC
AGGTCATCGCGTCACTCGTCCTCGACGAGGTTCTCTGGAAAGCTTATCAACATCTCTCAG
CCCTTTCAAAGTAATGGAACATCAGCGATAGCAGAACCAGAGAACGAGAAAAGCAAAAGA
TATAACCATTACCATCCCCACCACCAGCAACCTTCACATTTGCAGAAACAATCCTTAGAG
CGCAGTGGTAGCTCTTTAATTGGTGCGTCAGTCCCCATT
■■Homology search results ■■ -
sp_hit_id A3CX68
Definition sp|A3CX68|SYP_METMJ Prolyl-tRNA synthetase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1)
Align length 70
Score (bit) 31.6
E-value 3.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957858|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_H14, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A3CX68|SYP_METMJ Prolyl-tRNA synthetase OS=Methanoculleus mar...    32   3.6  
sp|A8SEF0|NU5C_CERDE NAD(P)H-quinone oxidoreductase subunit 5, c...    32   3.6  
sp|Q24523|BUN2_DROME Protein bunched, class 2/F isoform OS=Droso...    32   3.7  
sp|Q24256|BARH2_DROME Homeobox protein B-H2 OS=Drosophila melano...    32   3.7  
sp|Q3B6D5|RL17_PELLD 50S ribosomal protein L17 OS=Pelodictyon lu...    31   6.2  
sp|P51862|ROM2_YEAST RHO1 GDP-GTP exchange protein 2 OS=Saccharo...    31   6.2  
sp|Q9BXF6|RFIP5_HUMAN Rab11 family-interacting protein 5 OS=Homo...    31   6.2  
sp|P38041|BOB1_YEAST Protein BOB1 OS=Saccharomyces cerevisiae GN...    31   6.2  
sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter ...    30   8.1  
sp|Q00261|COAT_CMVP6 Coat protein OS=Cucumber mosaic virus (stra...    30   8.1  
sp|Q66138|COAT_CMVN Coat protein OS=Cucumber mosaic virus (strai...    30   8.1  
sp|Q00260|COAT_CMVM Coat protein OS=Cucumber mosaic virus (strai...    30   8.1  
sp|Q66120|COAT_CMVIX Coat protein OS=Cucumber mosaic virus (stra...    30   8.1  
sp|P26017|PC_DROME Polycomb group protein Pc OS=Drosophila melan...    30   8.1  
sp|O75949|F155B_HUMAN Transmembrane protein FAM155B OS=Homo sapi...    30   8.1  

>sp|A3CX68|SYP_METMJ Prolyl-tRNA synthetase OS=Methanoculleus
           marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=proS
           PE=3 SV=1
          Length = 477

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 18/70 (25%), Positives = 32/70 (45%)
 Frame = +2

Query: 278 AGFGLRLPKNRLRHGKNLHSWLMKKVETWAAVLAGTKWQRSLYPAPKAGHRVTRPRRGSL 457
           AGF ++L    +R G   + W M+ V     V        ++    + G + T  RRG +
Sbjct: 319 AGFAVKLDARDMRPGAKYYHWEMRGVPLRVEVGPRDIDANTVVAVARTGKKTTLDRRGVV 378

Query: 458 ESLSTSLSPF 487
           E +++ L+ F
Sbjct: 379 EGITSVLAEF 388


>sp|A8SEF0|NU5C_CERDE NAD(P)H-quinone oxidoreductase subunit 5,
           chloroplastic OS=Ceratophyllum demersum GN=ndhF PE=3
           SV=1
          Length = 741

 Score = 31.6 bits (70), Expect = 3.6
 Identities = 13/34 (38%), Positives = 22/34 (64%)
 Frame = -3

Query: 589 VSANVKVAGGGDGNGYIFCFSRSLVLLSLMFHYF 488
           V   +K AGGG  + YIF +S  +++  L+F++F
Sbjct: 707 VGEGIKYAGGGRISSYIFYYSSYVLIFVLIFYFF 740


>sp|Q24523|BUN2_DROME Protein bunched, class 2/F isoform
           OS=Drosophila melanogaster GN=bun PE=1 SV=3
          Length = 1206

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = +1

Query: 490 SNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSSLIGASVPI 639
           + GT+A A   + +   ++H+H HH Q  + Q+Q  +++  S   AS+ +
Sbjct: 291 ATGTTAAAGSHHHQPHHHHHHHHHHHQHHNHQQQQQQQTSLSQGHASLTV 340


>sp|Q24256|BARH2_DROME Homeobox protein B-H2 OS=Drosophila
           melanogaster GN=B-H2 PE=1 SV=3
          Length = 645

 Score = 31.6 bits (70), Expect = 3.7
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +1

Query: 505 AIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSSLIG 624
           A+ + + ++ ++  H HPHH Q    + ++L R G  L G
Sbjct: 191 AVLQQQQQQQQQQQHPHPHHLQLERERLEALHRHGHGLTG 230


>sp|Q3B6D5|RL17_PELLD 50S ribosomal protein L17 OS=Pelodictyon
           luteolum (strain DSM 273) GN=rplQ PE=3 SV=1
          Length = 172

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 23/64 (35%), Positives = 30/64 (46%)
 Frame = +2

Query: 395 RSLYPAPKAGHRVTRPRRGSLESLSTSLSPFKVMEHQR*QNQRTRKAKDITITIPTTSNL 574
           R + PA K G R    RR +L SLST L   K +E    + + TRK  +  IT      +
Sbjct: 2   RKVKPARKLG-RTAAHRRATLSSLSTQLILHKRIETTEAKAKETRKVVEKIITKALKGTV 60

Query: 575 HICR 586
           H  R
Sbjct: 61  HAQR 64


>sp|P51862|ROM2_YEAST RHO1 GDP-GTP exchange protein 2
           OS=Saccharomyces cerevisiae GN=ROM2 PE=1 SV=1
          Length = 1356

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
 Frame = +1

Query: 463 LINISQPFQSNGTSAIAEPE------NEKSKRYNHYHPHHQQPSHLQKQSLERSG--SSL 618
           L NI+  FQS  +++    +      N  S  ++H+H HH   SH    ++  SG  SS+
Sbjct: 297 LKNIASSFQSKTSNSRKATQKYDITSNPFSDPHHHHHHHHSSNSHSSLNNVHGSGNSSSV 356

Query: 619 IGAS 630
           +G+S
Sbjct: 357 MGSS 360


>sp|Q9BXF6|RFIP5_HUMAN Rab11 family-interacting protein 5 OS=Homo
           sapiens GN=RAB11FIP5 PE=1 SV=1
          Length = 653

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 7/65 (10%)
 Frame = +1

Query: 457 GKLINISQPFQSNGTSAIAEPEN----EKSKRYNHYHPHHQQPSHLQ---KQSLERSGSS 615
           GK + ++ P  ++ + A+AE E     E+  R   +H HHQ  S  +   + SL   G  
Sbjct: 431 GKPVQVATPIVAS-SEAVAEKEGARKEERKPRMGLFHHHHQGLSRSELGRRSSLGEKGGP 489

Query: 616 LIGAS 630
           ++GAS
Sbjct: 490 ILGAS 494


>sp|P38041|BOB1_YEAST Protein BOB1 OS=Saccharomyces cerevisiae
           GN=BOI1 PE=1 SV=1
          Length = 980

 Score = 30.8 bits (68), Expect = 6.2
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 463 LINISQPFQSNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSS 615
           L +   P  SN   A+++P   K     H H H  +  H  K S  + GSS
Sbjct: 665 LAHSETPTSSNNKEAVSQPSEGK-----HKHKHKHKSKHKHKNSSSKDGSS 710


>sp|Q2II25|PGK_ANADE Phosphoglycerate kinase OS=Anaeromyxobacter
           dehalogenans (strain 2CP-C) GN=pgk PE=3 SV=1
          Length = 396

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -2

Query: 179 AKSKLGIVEQQAHRRRNAGSFNHFLEPRNLPGLVACK 69
           A  + G+V++  H     G+   F+E R LPG+ AC+
Sbjct: 359 AVEQAGLVDKMKHVSTGGGASLEFIEGRELPGVKACE 395


>sp|Q00261|COAT_CMVP6 Coat protein OS=Cucumber mosaic virus (strain
           P6) GN=RNA4 PE=1 SV=1
          Length = 218

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 19/54 (35%), Positives = 28/54 (51%)
 Frame = +2

Query: 425 HRVTRPRRGSLESLSTSLSPFKVMEHQR*QNQRTRKAKDITITIPTTSNLHICR 586
           +R  RPRRGS  + S++ + F+V+  Q  +  +T  A   TI  PT      CR
Sbjct: 12  NRRRRPRRGSRSASSSADANFRVLSQQLSRLNKTLAAGRPTINHPTFVGSERCR 65
tr_hit_id B4NCH2
Definition tr|B4NCH2|B4NCH2_DROWI GK25084 OS=Drosophila willistoni
Align length 46
Score (bit) 36.6
E-value 1.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957858|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_H14, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4NCH2|B4NCH2_DROWI GK25084 OS=Drosophila willistoni GN=GK250...    37   1.3  
tr|B4JJ03|B4JJ03_DROGR GH12421 OS=Drosophila grimshawi GN=GH1242...    36   1.7  
tr|Q294V1|Q294V1_DROPS GA17848 OS=Drosophila pseudoobscura pseud...    35   3.0  
tr|A5E0T2|A5E0T2_LODEL Putative uncharacterized protein OS=Lodde...    35   3.9  
tr|B4MEW4|B4MEW4_DROVI GJ14895 OS=Drosophila virilis GN=GJ14895 ...    35   5.1  
tr|B8BRQ6|B8BRQ6_THAPS Predicted protein OS=Thalassiosira pseudo...    34   8.6  
tr|B8BWQ9|B8BWQ9_THAPS Predicted protein OS=Thalassiosira pseudo...    34   8.7  
tr|B4GMK7|B4GMK7_DROPE GL12220 OS=Drosophila persimilis GN=GL122...    34   8.7  
tr|B3N5M0|B3N5M0_DROER GG24234 OS=Drosophila erecta GN=GG24234 P...    34   8.7  
tr|Q2HE72|Q2HE72_CHAGB Putative uncharacterized protein OS=Chaet...    34   8.7  

>tr|B4NCH2|B4NCH2_DROWI GK25084 OS=Drosophila willistoni GN=GK25084
           PE=4 SV=1
          Length = 1887

 Score = 36.6 bits (83), Expect = 1.3
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +1

Query: 490 SNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSSLIGA 627
           S GTS +   ++++ +  + +H HHQ+    Q++SL+ +G S++ A
Sbjct: 347 SKGTSRLVSSDSDEEEDEDEHHQHHQEEDDEQRKSLDDNGDSVVKA 392


>tr|B4JJ03|B4JJ03_DROGR GH12421 OS=Drosophila grimshawi GN=GH12421
           PE=4 SV=1
          Length = 315

 Score = 36.2 bits (82), Expect = 1.7
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 496 GTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSS 615
           GT+ +    +     ++H HP H  P HLQ+QS+E SG +
Sbjct: 5   GTTLMLVDASPTEMHHSHPHPLHSHPRHLQRQSVELSGQT 44


>tr|Q294V1|Q294V1_DROPS GA17848 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA17848 PE=4 SV=2
          Length = 717

 Score = 35.4 bits (80), Expect = 3.0
 Identities = 12/31 (38%), Positives = 22/31 (70%)
 Frame = +1

Query: 520 ENEKSKRYNHYHPHHQQPSHLQKQSLERSGS 612
           + ++ ++++H+HPH QQ +H Q+Q L   GS
Sbjct: 157 QQQQQQQHHHHHPHQQQKNHPQQQRLATDGS 187


>tr|A5E0T2|A5E0T2_LODEL Putative uncharacterized protein
           OS=Lodderomyces elongisporus GN=LELG_03219 PE=4 SV=1
          Length = 471

 Score = 35.0 bits (79), Expect = 3.9
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +1

Query: 529 KSKRYNHYHPHHQQPSHLQKQSLERSGSSLIGASVPI 639
           ++++YNH+H HHQQPS      +  S SS I    P+
Sbjct: 333 QNQQYNHHHHHHQQPSSSSASYINTSMSSPIYQKEPV 369


>tr|B4MEW4|B4MEW4_DROVI GJ14895 OS=Drosophila virilis GN=GJ14895
           PE=4 SV=1
          Length = 718

 Score = 34.7 bits (78), Expect = 5.1
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +1

Query: 466 INISQPFQSNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSS 615
           ++IS  F S  +S+     +  S  ++H H HHQ    L+ QS  R GSS
Sbjct: 507 VSISSSFNSPKSSS-----HHHSNNHSHSHSHHQHQHQLRSQSFNRHGSS 551


>tr|B8BRQ6|B8BRQ6_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_20964 PE=4 SV=1
          Length = 429

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 23/84 (27%), Positives = 41/84 (48%)
 Frame = +2

Query: 335 SWLMKKVETWAAVLAGTKWQRSLYPAPKAGHRVTRPRRGSLESLSTSLSPFKVMEHQR*Q 514
           S L++ +  W A+L G  +   + P P++ H  + P R SL + S +L+  +  +     
Sbjct: 3   SLLLQTLCIWVAILQGHAFNSYILPVPQS-HHSSSPVRTSLFNPSLTLTCAQTADDTSQV 61

Query: 515 NQRTRKAKDITITIPTTSNLHICR 586
            Q  RK+K+ T  I  +S   + R
Sbjct: 62  KQSNRKSKNATKWIACSSTKEVTR 85


>tr|B8BWQ9|B8BWQ9_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_3073 PE=4 SV=1
          Length = 383

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 19/55 (34%), Positives = 32/55 (58%)
 Frame = +1

Query: 457 GKLINISQPFQSNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSSLI 621
           G+L+ +SQ   ++GTS+ +      S+ Y  Y PH ++   LQ+QS  RS S+ +
Sbjct: 40  GQLLLLSQSALAHGTSSSSAAAFVSSRHYKRYRPHPRR--SLQQQSSTRSRSTTV 92


>tr|B4GMK7|B4GMK7_DROPE GL12220 OS=Drosophila persimilis GN=GL12220
           PE=4 SV=1
          Length = 726

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = +1

Query: 532 SKRYNHYHPHHQQPSHLQKQSLERSGS 612
           S++  H+HPH QQ +H Q+Q L   GS
Sbjct: 170 SQQQQHHHPHQQQKNHPQQQGLATDGS 196


>tr|B3N5M0|B3N5M0_DROER GG24234 OS=Drosophila erecta GN=GG24234 PE=4
           SV=1
          Length = 233

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +1

Query: 502 SAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSGSSLIG 624
           +A     + + ++  H+HPHHQQP H     L  S  S++G
Sbjct: 152 TATLNRHHHQQQQQLHHHPHHQQPHHSGSSLLMGSAGSVMG 192


>tr|Q2HE72|Q2HE72_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_01482 PE=4 SV=1
          Length = 666

 Score = 33.9 bits (76), Expect = 8.7
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 484 FQSNGTSAIAEPENEKSKRYNHYHPHHQQPSHLQKQSLERSG-SSLIGASVP 636
           +++ G    A P+  +  +  H +PHH  P H Q      SG ++L+G   P
Sbjct: 438 YKAGGGYLTANPDQYQQYQQYHQYPHHHHPHHHQSHERNESGLTTLVGTPSP 489