| DK957875 |
| Clone id |
TST39A01NGRL0029_I07 |
| Library |
TST39 |
| Length |
680 |
| Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_I07. 5' end sequence. |
| Accession |
DK957875 |
| Tissue type |
prothallia with plantlets |
| Developmental stage |
gametophytes with sporophytes |
| Contig ID |
CL4160Contig1 |
| Sequence |
CAGTACTCCTCCATGAGAATGTCGTTCTCTATTGCCCTCTAAGCTCCCTTCTTTGTCTGC TCCTCGGCGTATTAAGAGAGCGGAAGGGGCTCAGGCATGGCCGCAGCCGCTGCCCGCAAC CTCCTTGTACCAAATGAAAGCAAGCAGCAGCTTCCCGCAGCTTCGTCGACTCTCACGAGG CCCACATTCTTGCGTGGGCCTTCAATTAGCTTTGCTTCCTGCGGTTCATTCTCCTCTTCA ATCTCGCTTCCAGGTGCTGCCCCAAGAAGCGTTCGGAAGAACAGGAATGGTACCTTCCTT GTCTCTCCTCGTGCGGTTTCTGATTCTCGCAATGATGAGGCCTGCCTCGAACCTGATGCT GGAAGCAGTGTGATGAGCATAATTCTTGGAGGCGGAGCAGGAACCAGGCTGTACCCCCTT ACAAAGAAAAGAGCAAAGCCTGCAGTTCCTCTTGGCGCCAATTACCGTTTAATTGACATC CCCGTTAGTAATTGCATCAATAGCAACATTCGCAAAATTTATGTCCTCACTCAGTTCAAC TCTGCATCACTTAATAGACATCTGTCCCGTGCGTACTCCAGTAACATGGGAGGCTACAAG TATGAAGGATTTGTGGAGGTTCTTGCTGCTCAGCAGAGCCCTGAAAATCCCAACTGGTTT CAGGGCACAGCTGATGCTGT |
| ■■Homology search results ■■ |
- |
| Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
| sp_hit_id |
P55228 |
| Definition |
sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana |
| Align length |
132 |
| Score (bit) |
236.0 |
| E-value |
1.0e-61 |
| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957875|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_I07, 5' (680 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase sma... 236 1e-61 sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase sm... 236 1e-61 sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase sma... 232 1e-60 sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase sma... 232 1e-60 sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase sma... 232 2e-60 sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase sma... 229 1e-59 sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase sm... 228 2e-59 sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase sma... 227 4e-59 sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase sma... 227 5e-59 sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase sma... 199 1e-50 sp|Q3MBJ4|GLGC_ANAVT Glucose-1-phosphate adenylyltransferase OS=... 164 3e-40 sp|P30521|GLGC_ANASP Glucose-1-phosphate adenylyltransferase OS=... 164 3e-40 sp|P52415|GLGC_SYNY3 Glucose-1-phosphate adenylyltransferase OS=... 162 1e-39 sp|A5GLA9|GLGC_SYNPW Glucose-1-phosphate adenylyltransferase OS=... 160 4e-39 sp|Q5N3K9|GLGC_SYNP6 Glucose-1-phosphate adenylyltransferase OS=... 160 8e-39 sp|Q31QN4|GLGC_SYNE7 Glucose-1-phosphate adenylyltransferase OS=... 160 8e-39 sp|P55229|GLGL1_ARATH Glucose-1-phosphate adenylyltransferase la... 151 3e-36 sp|P55243|GLGL3_SOLTU Glucose-1-phosphate adenylyltransferase la... 144 3e-34 sp|P55230|GLGL2_ARATH Glucose-1-phosphate adenylyltransferase la... 144 3e-34 sp|P55233|GLGL1_BETVU Glucose-1-phosphate adenylyltransferase la... 142 2e-33 sp|P55231|GLGL3_ARATH Glucose-1-phosphate adenylyltransferase la... 132 1e-30 sp|Q9SIK1|GLGL4_ARATH Probable glucose-1-phosphate adenylyltrans... 130 6e-30 sp|P55234|GLGL2_MAIZE Glucose-1-phosphate adenylyltransferase la... 130 6e-30 sp|Q00081|GLGL1_SOLTU Glucose-1-phosphate adenylyltransferase la... 129 1e-29 sp|P12300|GLGL3_WHEAT Glucose-1-phosphate adenylyltransferase la... 129 2e-29 sp|P12299|GLGL2_WHEAT Glucose-1-phosphate adenylyltransferase la... 129 2e-29 sp|P30524|GLGL1_HORVU Glucose-1-phosphate adenylyltransferase la... 129 2e-29 sp|P55241|GLGL1_MAIZE Glucose-1-phosphate adenylyltransferase la... 127 7e-29 sp|P55242|GLGL2_SOLTU Glucose-1-phosphate adenylyltransferase la... 126 1e-28 sp|Q3SH75|GLGC_THIDA Glucose-1-phosphate adenylyltransferase OS=... 109 1e-23
>sp|P55228|GLGS_ARATH Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Arabidopsis thaliana GN=APS1 PE=2 SV=2 Length = 520
Score = 236 bits (601), Expect = 1e-61 Identities = 114/132 (86%), Positives = 122/132 (92%) Frame = +1
Query: 283 RNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGAN 462 R +VSP+AVSDS+N + CL+PDA SSV+ IILGGGAGTRLYPLTKKRAKPAVPLGAN Sbjct: 61 RRNPIIVSPKAVSDSQNSQTCLDPDASSSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 120
Query: 463 YRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSP 642 YRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SNMGGYK EGFVEVLAAQQSP Sbjct: 121 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP 180
Query: 643 ENPNWFQGTADA 678 ENPNWFQGTADA Sbjct: 181 ENPNWFQGTADA 192
>sp|P52417|GLGS2_VICFA Glucose-1-phosphate adenylyltransferase small subunit 2, chloroplastic OS=Vicia faba GN=AGPP PE=2 SV=1 Length = 512
Score = 236 bits (601), Expect = 1e-61 Identities = 114/138 (82%), Positives = 125/138 (90%) Frame = +1
Query: 265 RSVRKNRNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPA 444 R+ R + F+VSP+AVSDS+N + CL+PDA SV+ IILGGGAGTRLYPLTKKRAKPA Sbjct: 47 RTRRTSGRNPFIVSPKAVSDSKNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPA 106
Query: 445 VPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVL 624 VPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SN+GGYK EGFVEVL Sbjct: 107 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVL 166
Query: 625 AAQQSPENPNWFQGTADA 678 AAQQSPENPNWFQGTADA Sbjct: 167 AAQQSPENPNWFQGTADA 184
>sp|P23509|GLGS_SOLTU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Solanum tuberosum PE=1 SV=2 Length = 521
Score = 232 bits (592), Expect = 1e-60 Identities = 115/139 (82%), Positives = 125/139 (89%), Gaps = 1/139 (0%) Frame = +1
Query: 265 RSVRKN-RNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKP 441 + VR N R +VSP+AVSDS+N + CL+PDA SV+ IILGGGAGTRLYPLTKKRAKP Sbjct: 55 QGVRFNVRRSPMIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKP 114
Query: 442 AVPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEV 621 AVPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SNMGGYK EGFVEV Sbjct: 115 AVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEV 174
Query: 622 LAAQQSPENPNWFQGTADA 678 LAAQQSPENP+WFQGTADA Sbjct: 175 LAAQQSPENPDWFQGTADA 193
>sp|Q9M462|GLGS_BRANA Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Brassica napus GN=AGPS1 PE=2 SV=1 Length = 520
Score = 232 bits (592), Expect = 1e-60 Identities = 112/127 (88%), Positives = 120/127 (94%) Frame = +1
Query: 298 LVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGANYRLID 477 +VSP+AVSDS+N + CL+PDA SV+ IILGGGAGTRLYPLTKKRAKPAVPLGANYRLID Sbjct: 66 IVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLID 125
Query: 478 IPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSPENPNW 657 IPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SNMGGYK EGFVEVLAAQQSPENPNW Sbjct: 126 IPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSPENPNW 185
Query: 658 FQGTADA 678 FQGTADA Sbjct: 186 FQGTADA 192
>sp|P55232|GLGS_BETVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic (Fragment) OS=Beta vulgaris GN=AGPB1 PE=2 SV=1 Length = 489
Score = 232 bits (591), Expect = 2e-60 Identities = 113/138 (81%), Positives = 123/138 (89%) Frame = +1
Query: 265 RSVRKNRNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPA 444 R R + +VSP+AVSDS+N + CL+P+A SV+ IILGGGAGTRLYPLTKKRAKPA Sbjct: 36 RYCRISSRAPIVVSPKAVSDSKNSQTCLDPEASRSVLGIILGGGAGTRLYPLTKKRAKPA 95
Query: 445 VPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVL 624 VPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SNMGGYK EGFVEVL Sbjct: 96 VPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGGYKNEGFVEVL 155
Query: 625 AAQQSPENPNWFQGTADA 678 AAQQSPENPNWFQGTADA Sbjct: 156 AAQQSPENPNWFQGTADA 173
>sp|Q42882|GLGS_SOLLC Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic OS=Solanum lycopersicum PE=2 SV=1 Length = 521
Score = 229 bits (584), Expect = 1e-59 Identities = 114/139 (82%), Positives = 124/139 (89%), Gaps = 1/139 (0%) Frame = +1
Query: 265 RSVRKN-RNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKP 441 + VR N R +VSP+AVSDS+N + CL+PDA SV+ IILGGGAGTRLYPLTKKRAKP Sbjct: 55 QGVRFNVRRSPLIVSPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKP 114
Query: 442 AVPLGANYRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEV 621 AVPLGANYRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SNMG YK EGFVEV Sbjct: 115 AVPLGANYRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNMGEYKNEGFVEV 174
Query: 622 LAAQQSPENPNWFQGTADA 678 LAAQQSPENP+WFQGTADA Sbjct: 175 LAAQQSPENPDWFQGTADA 193
>sp|P52416|GLGS1_VICFA Glucose-1-phosphate adenylyltransferase small subunit 1, chloroplastic OS=Vicia faba GN=AGPC PE=2 SV=1 Length = 508
Score = 228 bits (581), Expect = 2e-59 Identities = 109/126 (86%), Positives = 119/126 (94%) Frame = +1
Query: 301 VSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI 480 ++P+AVSDS+N + CL+PDA SV+ IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI Sbjct: 55 LTPKAVSDSQNSQTCLDPDASRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDI 114
Query: 481 PVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSPENPNWF 660 PVSNC+NSNI KIYVLTQFNSASLNRHLSRAY+SN+GGYK EGFVEVLAAQQSPENPNWF Sbjct: 115 PVSNCLNSNISKIYVLTQFNSASLNRHLSRAYASNLGGYKNEGFVEVLAAQQSPENPNWF 174
Query: 661 QGTADA 678 QGTADA Sbjct: 175 QGTADA 180
>sp|P55238|GLGS_HORVU Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Hordeum vulgare PE=2 SV=1 Length = 513
Score = 227 bits (579), Expect = 4e-59 Identities = 109/128 (85%), Positives = 119/128 (92%) Frame = +1
Query: 295 FLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGANYRLI 474 F SPRAVSDS++ + CL+PDA +SV+ IILGGGAGTRLYPLTKKRAKPAVPLGANYRLI Sbjct: 58 FFFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLI 117
Query: 475 DIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSPENPN 654 DIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY SN+GGYK EGFVEVLAAQQSP+NP+ Sbjct: 118 DIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPD 177
Query: 655 WFQGTADA 678 WFQGTADA Sbjct: 178 WFQGTADA 185
>sp|P15280|GLGS_ORYSJ Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Oryza sativa subsp. japonica GN=AGPS PE=2 SV=4 Length = 514
Score = 227 bits (578), Expect = 5e-59 Identities = 109/132 (82%), Positives = 120/132 (90%) Frame = +1
Query: 283 RNGTFLVSPRAVSDSRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGAN 462 R + SPRAVSDS++ + CL+PDA +SV+ IILGGGAGTRLYPLTKKRAKPAVPLGAN Sbjct: 55 RRRPLVFSPRAVSDSKSSQTCLDPDASTSVLGIILGGGAGTRLYPLTKKRAKPAVPLGAN 114
Query: 463 YRLIDIPVSNCINSNIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSP 642 YRLIDIPVSNC+NSNI KIYVLTQFNSASLNRHLSRAY +N+GGYK EGFVEVLAAQQSP Sbjct: 115 YRLIDIPVSNCLNSNISKIYVLTQFNSASLNRHLSRAYGNNIGGYKNEGFVEVLAAQQSP 174
Query: 643 ENPNWFQGTADA 678 +NPNWFQGTADA Sbjct: 175 DNPNWFQGTADA 186
>sp|P30523|GLGS_WHEAT Glucose-1-phosphate adenylyltransferase small subunit, chloroplastic/amyloplastic OS=Triticum aestivum GN=AGP-S PE=2 SV=1 Length = 473
Score = 199 bits (505), Expect = 1e-50 Identities = 98/118 (83%), Positives = 104/118 (88%) Frame = +1
Query: 325 SRNDEACLEPDAGSSVMSIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCINS 504 S + A L P SV+ IILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNC+NS Sbjct: 28 SSSKHADLNPHVDDSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNS 87
Query: 505 NIRKIYVLTQFNSASLNRHLSRAYSSNMGGYKYEGFVEVLAAQQSPENPNWFQGTADA 678 NI KIYV TQFNSASLNRHLSRAY SN+GGYK EGFVEVLAAQQSP+NP+WFQGTADA Sbjct: 88 NISKIYVRTQFNSASLNRHLSRAYGSNIGGYKNEGFVEVLAAQQSPDNPDWFQGTADA 145
|
| TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
| tr_hit_id |
A9PF44 |
| Definition |
tr|A9PF44|A9PF44_POPTR Glucose-1-phosphate adenylyltransferase OS=Populus trichocarpa |
| Align length |
183 |
| Score (bit) |
240.0 |
| E-value |
7.0e-62 |
| Report |
 |