DK957901 |
Clone id |
TST39A01NGRL0029_J11 |
Library |
TST39 |
Length |
535 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_J11. 5' end sequence. |
Accession |
DK957901 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL878Contig1 |
Sequence |
CCGCACTTAGCGCTCTCCCGCCCCTTCGTCCTCTCCGCACAACCATTCTCCTTCTCCCCT CTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACTCTCTCTCT CTCTCTCTCTCTCTCTCTCTCTCTCTTCTGTCCACAATTCATCCATGAATTCTGCCAACC CTCCCCCAAGTTCTGGCTATAGCGAGCTCCTGGAGCGCGTCTCCTCCCTGGAGCAGTCTG TCCAGAAGCTTCTTTCACAAAAAAAACGCTCAAATTCTCAGCAGCATCTGCTTCATTTGG AACAGCAACACGAGACTTGCTCATCTCCCAGGTTGCGAGTGCCTTACCCTTCCACATTTG GAGTGACCAGCGCTTCCGTGCCTTCCGTTTTCCAGATGCCCCTGCACTATCCTCGATTCT CACGTGCGGACTATGAGGCCATGGAGGAGTGTAGGCTGGCTCGCTTGCTGGAAGAGTATG GTCTGCCTATCCCTTCCACTCTCGCTGACATGCGCGAGCTTGCCATTGGGAACTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P0A2I5 |
Definition |
sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella typhimurium |
Align length |
41 |
Score (bit) |
31.2 |
E-value |
3.3 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957901|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_J11, 5' (535 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella... 31 3.3 sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella... 31 3.3 sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichi... 31 3.3 sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos ta... 30 5.7 sp|Q14BI2|GRM2_MOUSE Metabotropic glutamate receptor 2 OS=Mus mu... 30 5.7 sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane doma... 30 7.4 sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing prote... 30 7.4 sp|P31421|GRM2_RAT Metabotropic glutamate receptor 2 OS=Rattus n... 30 9.7 sp|Q14416|GRM2_HUMAN Metabotropic glutamate receptor 2 OS=Homo s... 30 9.7
>sp|P0A2I5|PARE_SALTY DNA topoisomerase 4 subunit B OS=Salmonella typhimurium GN=parE PE=3 SV=1 Length = 630
Score = 31.2 bits (69), Expect = 3.3 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2
Query: 411 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 292 DSAG S K+ + R+ ++ KGK L TWE+S V E Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460
>sp|P0A2I6|PARE_SALTI DNA topoisomerase 4 subunit B OS=Salmonella typhi GN=parE PE=3 SV=1 Length = 630
Score = 31.2 bits (69), Expect = 3.3 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2
Query: 411 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 292 DSAG S K+ + R+ ++ KGK L TWE+S V E Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460
>sp|P20083|PARE_ECOLI DNA topoisomerase 4 subunit B OS=Escherichia coli (strain K12) GN=parE PE=1 SV=3 Length = 630
Score = 31.2 bits (69), Expect = 3.3 Identities = 17/41 (41%), Positives = 23/41 (56%), Gaps = 1/41 (2%) Frame = -2
Query: 411 DSAGASGKR-KARKRWSLQMWKGKALATWEMSKSRVAVPNE 292 DSAG S K+ + R+ ++ KGK L TWE+S V E Sbjct: 420 DSAGGSAKQARDREYQAIMPLKGKILNTWEVSSDEVLASQE 460
>sp|Q08DP6|RHG10_BOVIN Rho GTPase-activating protein 10 OS=Bos taurus GN=ARHGAP10 PE=2 SV=1 Length = 785
Score = 30.4 bits (67), Expect = 5.7 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 7/56 (12%) Frame = -2
Query: 522 QARACQREWKG*ADHTLPASEPAYTPPWPHSPHVRIEDSAGASGK-------RKAR 376 QAR+ +W T P+ PA TPP P P V + A + K RKAR Sbjct: 678 QARSSAVQWLNPQSPTTPSCSPAVTPPSPKLPPVPLSLPATVADKPPESIISRKAR 733
>sp|Q14BI2|GRM2_MOUSE Metabotropic glutamate receptor 2 OS=Mus musculus GN=Grm2 PE=2 SV=2 Length = 872
Score = 30.4 bits (67), Expect = 5.7 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +1
Query: 367 PALPCLPFSRCPCTILDSHVRTMRPWRSVGWLACWKSMVCLSLPLSL---TCASLPLG 531 P+ LP SRC L + V++++P G + CW + C L TCA LG Sbjct: 490 PSAGTLPASRCSEPCLQNEVKSVQP----GEVCCWLCIPCQPYEYRLDEFTCADCGLG 543
>sp|Q8BGX3|LRTM2_MOUSE Leucine-rich repeat and transmembrane domain-containing protein 2 OS=Mus musculus GN=Lrtm2 PE=2 SV=1 Length = 370
Score = 30.0 bits (66), Expect = 7.4 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 4/33 (12%) Frame = +1
Query: 442 WRSVGWLACWKSMVCLSL----PLSLTCASLPL 528 WR V W+ CW ++ + + P S TC S L Sbjct: 18 WRQVSWITCWIALCAVEVIPACPFSCTCDSRSL 50
>sp|Q921C3|BRWD1_MOUSE Bromodomain and WD repeat-containing protein 1 OS=Mus musculus GN=Brwd1 PE=1 SV=1 Length = 2304
Score = 30.0 bits (66), Expect = 7.4 Identities = 19/52 (36%), Positives = 24/52 (46%) Frame = -2
Query: 438 PHSPHVRIEDSAGASGKRKARKRWSLQMWKGKALATWEMSKSRVAVPNEADA 283 PHS H I DS S R RK W+ AT + +KSR +E D+ Sbjct: 1706 PHSVHNSISDSESDSDLRATRKTWNANGCTSHTAATCK-TKSRPIESSEEDS 1756
>sp|P31421|GRM2_RAT Metabotropic glutamate receptor 2 OS=Rattus norvegicus GN=Grm2 PE=1 SV=1 Length = 872
Score = 29.6 bits (65), Expect = 9.7 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +1
Query: 367 PALPCLPFSRCPCTILDSHVRTMRPWRSVGWLACWKSMVCLSLPLSL---TCASLPLG 531 P+ LP SRC L + V++++P G + CW + C L TCA LG Sbjct: 490 PSAGPLPASRCSEPCLQNEVKSVQP----GEVCCWLCIPCQPYEYRLDEFTCADCGLG 543
>sp|Q14416|GRM2_HUMAN Metabotropic glutamate receptor 2 OS=Homo sapiens GN=GRM2 PE=2 SV=2 Length = 872
Score = 29.6 bits (65), Expect = 9.7 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 3/58 (5%) Frame = +1
Query: 367 PALPCLPFSRCPCTILDSHVRTMRPWRSVGWLACWKSMVCLSLPLSL---TCASLPLG 531 P+ LP SRC L + V++++P G + CW + C L TCA LG Sbjct: 490 PSAGPLPASRCSEPCLQNEVKSVQP----GEVCCWLCIPCQPYEYRLDEFTCADCGLG 543
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6SYT2 |
Definition |
tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays |
Align length |
49 |
Score (bit) |
66.6 |
E-value |
7.0e-10 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957901|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_J11, 5' (535 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea m... 67 7e-10 tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea m... 63 1e-08 tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08... 61 3e-08 tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa00... 61 3e-08 tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subs... 61 3e-08 tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08 tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza... 61 3e-08 tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g5562... 60 5e-08 tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea m... 59 1e-07 tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabi... 59 2e-07 tr|B8AFA1|B8AFA1_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07 tr|A0MDU7|A0MDU7_ARATH Putative uncharacterized protein (Fragmen... 59 2e-07 tr|Q6K249|Q6K249_ORYSJ Os02g0258800 protein OS=Oryza sativa subs... 59 2e-07 tr|B6UC11|B6UC11_MAIZE Putative uncharacterized protein OS=Zea m... 59 2e-07 tr|B6TG82|B6TG82_MAIZE Putative uncharacterized protein OS=Zea m... 59 2e-07 tr|Q9M2S2|Q9M2S2_ARATH Putative uncharacterized protein T22E16.2... 58 3e-07 tr|A7R2A3|A7R2A3_VITVI Chromosome undetermined scaffold_410, who... 58 3e-07 tr|A7PZS1|A7PZS1_VITVI Chromosome chr15 scaffold_40, whole genom... 58 3e-07 tr|Q9FM76|Q9FM76_ARATH Gb|AAF04428.1 OS=Arabidopsis thaliana PE=... 58 3e-07 tr|Q8LC55|Q8LC55_ARATH Putative uncharacterized protein (At5g556... 58 3e-07 tr|A7QNB4|A7QNB4_VITVI Chromosome chr2 scaffold_132, whole genom... 58 3e-07 tr|A9PIZ8|A9PIZ8_POPJC Putative uncharacterized protein OS=Popul... 57 5e-07 tr|B4FUG1|B4FUG1_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06 tr|B6T4F8|B6T4F8_MAIZE Putative uncharacterized protein OS=Zea m... 56 1e-06 tr|A7PIP0|A7PIP0_VITVI Chromosome chr13 scaffold_17, whole genom... 55 2e-06 tr|B6T827|B6T827_MAIZE Putative uncharacterized protein OS=Zea m... 55 3e-06 tr|Q9SR60|Q9SR60_ARATH Putative uncharacterized protein T22K18.2... 52 1e-05 tr|Q58FW2|Q58FW2_ARATH Putative uncharacterized protein OS=Arabi... 50 6e-05 tr|A5B4B1|A5B4B1_VITVI Putative uncharacterized protein OS=Vitis... 50 7e-05 tr|A3BC93|A3BC93_ORYSJ Putative uncharacterized protein OS=Oryza... 44 0.007
>tr|B6SYT2|B6SYT2_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 87
Score = 66.6 bits (161), Expect = 7e-10 Identities = 32/49 (65%), Positives = 35/49 (71%) Frame = +3
Query: 384 SVFQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 S FQMPLHYPR SR DYEAM E +L RLL EYGLP+ T+ R AIG Sbjct: 28 SYFQMPLHYPRHSREDYEAMPEWQLDRLLSEYGLPVAGTVHQKRTFAIG 76
>tr|B6T5I5|B6T5I5_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 99
Score = 62.8 bits (151), Expect = 1e-08 Identities = 29/49 (59%), Positives = 35/49 (71%) Frame = +3
Query: 384 SVFQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 S F+MPLHYPR+ +ADYEAM E R+ LL EYGLP+ L RE A+G Sbjct: 43 SSFRMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVAGDLRGKREFAMG 91
>tr|Q9LE65|Q9LE65_ORYSJ Putative uncharacterized protein P0483F08.38 (Putative uncharacterized protein) (Putative uncharacterized protein P0443E05.1) OS=Oryza sativa subsp. japonica GN=P0483F08.38 PE=4 SV=1 Length = 79
Score = 61.2 bits (147), Expect = 3e-08 Identities = 28/47 (59%), Positives = 32/47 (68%) Frame = +3
Query: 390 FQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 FQMPLHYPR+ + DYE M E +L RLL EYGLP+ L R AIG Sbjct: 20 FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIG 66
>tr|Q654E0|Q654E0_ORYSJ Putative uncharacterized protein OSJNBa0009J19.26 OS=Oryza sativa subsp. japonica GN=OSJNBa0009J19.26 PE=4 SV=1 Length = 82
Score = 61.2 bits (147), Expect = 3e-08 Identities = 27/47 (57%), Positives = 34/47 (72%) Frame = +3
Query: 390 FQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 FQMPLHYPR+ +ADYEAM E R+ LL EYGLP+ + + R A+G Sbjct: 28 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMG 74
>tr|Q0DBV7|Q0DBV7_ORYSJ Os06g0523300 protein OS=Oryza sativa subsp. japonica GN=Os06g0523300 PE=4 SV=1 Length = 98
Score = 61.2 bits (147), Expect = 3e-08 Identities = 27/47 (57%), Positives = 34/47 (72%) Frame = +3
Query: 390 FQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 FQMPLHYPR+ +ADYEAM E R+ LL EYGLP+ + + R A+G Sbjct: 44 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMG 90
>tr|A2YDK2|A2YDK2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_23191 PE=4 SV=1 Length = 82
Score = 61.2 bits (147), Expect = 3e-08 Identities = 27/47 (57%), Positives = 34/47 (72%) Frame = +3
Query: 390 FQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 FQMPLHYPR+ +ADYEAM E R+ LL EYGLP+ + + R A+G Sbjct: 28 FQMPLHYPRYKKADYEAMPEWRVDCLLREYGLPVDGGVEEKRRFAMG 74
>tr|A2WM66|A2WM66_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_00937 PE=4 SV=1 Length = 79
Score = 61.2 bits (147), Expect = 3e-08 Identities = 28/47 (59%), Positives = 32/47 (68%) Frame = +3
Query: 390 FQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 FQMPLHYPR+ + DYE M E +L RLL EYGLP+ L R AIG Sbjct: 20 FQMPLHYPRYRKEDYERMPEWQLDRLLSEYGLPVDGNLQHKRAFAIG 66
>tr|Q8GY86|Q8GY86_ARATH Putative uncharacterized protein At5g55620/MDF20_6 OS=Arabidopsis thaliana GN=At5g55620/MDF20_6 PE=4 SV=1 Length = 101
Score = 60.5 bits (145), Expect = 5e-08 Identities = 26/51 (50%), Positives = 37/51 (72%) Frame = +3
Query: 381 PSVFQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIGN 533 PS FQ+PLHYP++S++DYE M++ RL LL++YG +L D R AIG+ Sbjct: 44 PSGFQVPLHYPKYSKSDYEVMDDLRLDLLLKQYGFSFEGSLEDKRVFAIGS 94
>tr|B6SXC4|B6SXC4_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 104
Score = 59.3 bits (142), Expect = 1e-07 Identities = 30/65 (46%), Positives = 40/65 (61%) Frame = +3
Query: 336 RVPYPSTFGVTSASVPSVFQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMR 515 +V P T +S + F MPLHYPR+ +ADYE+M E R+ LL EYGLP+ L R Sbjct: 36 KVEGPRTMNCSSYT----FHMPLHYPRYKKADYESMPEWRVDCLLREYGLPVDGELDSKR 91
Query: 516 ELAIG 530 + A+G Sbjct: 92 KFAMG 96
>tr|Q1G3G9|Q1G3G9_ARATH Putative uncharacterized protein OS=Arabidopsis thaliana PE=4 SV=1 Length = 101
Score = 58.9 bits (141), Expect = 2e-07 Identities = 26/49 (53%), Positives = 36/49 (73%) Frame = +3
Query: 384 SVFQMPLHYPRFSRADYEAMEECRLARLLEEYGLPIPSTLADMRELAIG 530 S FQ+PLHYP+++++DYE M E +L RLL EYGLP+ + R+ AIG Sbjct: 43 SSFQIPLHYPKYTKSDYEKMPEWQLDRLLREYGLPVIGDSYEKRKFAIG 91
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