DK957902 |
Clone id |
TST39A01NGRL0029_J12 |
Library |
TST39 |
Length |
633 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_J12. 5' end sequence. |
Accession |
DK957902 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL1302Contig1 |
Sequence |
CGATAACAGGAGGATTGGAAATGGGGTCTCCCCTCTTTACTCTGGGTTTGAAAAATCTCG CCAAGAAGAAGCGCCACCATCACCAGTGCGAAGGACCACAGGAGGCCGTCATATTTGTGG GTGGAGCGCCCGCGTCACAGCCACCCATCGCGCCTACGCAGGCACTGCCACCCACAACAC GTACACATGCAAGATCACCCACGACGCCTGAGGGGCGGCCGCAACCCTCGACAGCTATGC AAGAGGATGGAGGGCATCCAATACCCCTCCAACTAAGTACCGCGCAAGCGCAAGGCCGCA CGATAATCAACTTTCGCGGCCTGCTCATCGATGTGACACCCTCCTGGCTCAATATTGCGG CTACGCATGAGGGACAGGCAACAGAACAAGAGCTGCAGCAGCATCCACCTTGGCTTCCGA TTGTGCGAACTGGGCAGACATCTAATGGCTTCCGAAACTATGAGTGCCCGATCTGCCTTG AAATATTGCAAGCAAGTGACAAGGCGTCCTCCCTGCTCCCTTGCAACCATGCATTCCACT TGCAATGCATTACCAGTTGGCTTAACCTCAATTCCTCTTGCCCGGTTTGCTACCATACCT CTATCTCCAGCTGAAGACGATACTGGCTCTCTA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9XF63 |
Definition |
sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P OS=Arabidopsis thaliana |
Align length |
64 |
Score (bit) |
58.5 |
E-value |
3.0e-08 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QVT3 |
Definition |
tr|A7QVT3|A7QVT3_VITVI Chromosome chr7 scaffold_192, whole genome shotgun sequence OS=Vitis vinifera |
Align length |
100 |
Score (bit) |
60.5 |
E-value |
8.0e-08 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957902|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_J12, 5' (633 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QVT3|A7QVT3_VITVI Chromosome chr7 scaffold_192, whole genom... 60 8e-08 tr|B6TYR6|B6TYR6_MAIZE RING-H2 finger protein ATL2B OS=Zea mays ... 60 1e-07 tr|B6SWY2|B6SWY2_MAIZE Protein binding protein OS=Zea mays PE=2 ... 60 1e-07 tr|A9P156|A9P156_PICSI Putative uncharacterized protein OS=Picea... 60 1e-07 tr|A9RZM7|A9RZM7_PHYPA Predicted protein (Fragment) OS=Physcomit... 59 2e-07 tr|Q6ZJI1|Q6ZJI1_ORYSJ Os08g0550400 protein OS=Oryza sativa subs... 59 2e-07 tr|A2YXW2|A2YXW2_ORYSI Putative uncharacterized protein OS=Oryza... 59 2e-07 tr|Q0WT62|Q0WT62_ARATH RING-H2 zinc finger protein OS=Arabidopsi... 59 3e-07 tr|A8E124|A8E124_SPIOL NEP1-interacting protein OS=Spinacia oler... 59 3e-07 tr|A2ZBE2|A2ZBE2_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|A7PD41|A7PD41_VITVI Chromosome chr17 scaffold_12, whole genom... 58 4e-07 tr|A2YXV6|A2YXV6_ORYSI Putative uncharacterized protein OS=Oryza... 58 4e-07 tr|Q6H6Q0|Q6H6Q0_ORYSJ Putative uncharacterized protein P0475F05... 58 5e-07 tr|A7R3N3|A7R3N3_VITVI Chromosome undetermined scaffold_546, who... 58 5e-07 tr|A7R3E8|A7R3E8_VITVI Chromosome undetermined scaffold_516, who... 58 5e-07 tr|A5BMU1|A5BMU1_VITVI Putative uncharacterized protein (Chromos... 58 5e-07 tr|Q8WZL0|Q8WZL0_NEUCR Related to COP1-interacting protein CIP8 ... 58 5e-07 tr|Q4FE38|Q4FE38_ARATH At2g42360 OS=Arabidopsis thaliana GN=At2g... 57 7e-07 tr|B8LN43|B8LN43_PICSI Putative uncharacterized protein OS=Picea... 57 7e-07 tr|B7GBA9|B7GBA9_PHATR Predicted protein OS=Phaeodactylum tricor... 57 7e-07 tr|B6UH48|B6UH48_MAIZE RING-H2 finger protein ATL5H OS=Zea mays ... 57 7e-07 tr|B6TJL1|B6TJL1_MAIZE Protein binding protein OS=Zea mays PE=2 ... 57 7e-07 tr|A7QUA4|A7QUA4_VITVI Chromosome chr2 scaffold_176, whole genom... 57 7e-07 tr|A7NY09|A7NY09_VITVI Chromosome chr6 scaffold_3, whole genome ... 57 7e-07 tr|A5AZN8|A5AZN8_VITVI Putative uncharacterized protein OS=Vitis... 57 7e-07 tr|A2ZHF8|A2ZHF8_ORYSI Putative uncharacterized protein OS=Oryza... 57 7e-07 tr|Q0WP64|Q0WP64_ARATH Putative uncharacterized protein At5g0188... 57 9e-07 tr|A7QBB7|A7QBB7_VITVI Chromosome chr4 scaffold_73, whole genome... 57 9e-07 tr|A5C4L5|A5C4L5_VITVI Putative uncharacterized protein OS=Vitis... 57 9e-07 tr|Q3V289|Q3V289_MOUSE Putative uncharacterized protein OS=Mus m... 57 1e-06
>tr|A7QVT3|A7QVT3_VITVI Chromosome chr7 scaffold_192, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00007509001 PE=4 SV=1 Length = 346
Score = 60.5 bits (145), Expect = 8e-08 Identities = 38/100 (38%), Positives = 52/100 (52%) Frame = +3
Query: 324 LIDVTPSWLNIAATHEGQATEQELQQHPPWLPIVRTGQTSNGFRNYECPICLEILQASDK 503 L+D +P++LN E + Q P +L R GQ+ G + C +CL Q D Sbjct: 85 LMDYSPTFLNRGLD------ESLIHQIPTFL--FRRGQSEEG-SFHGCVVCLNEFQEHDM 135
Query: 504 ASSLLPCNHAFHLQCITSWLNLNSSCPVCYHTSISS*RRY 623 L C+HAFHL CI WL N++CP+C +SIS RY Sbjct: 136 IRVLPNCSHAFHLDCIDIWLQSNANCPLC-RSSISGTTRY 174
>tr|B6TYR6|B6TYR6_MAIZE RING-H2 finger protein ATL2B OS=Zea mays PE=2 SV=1 Length = 223
Score = 60.1 bits (144), Expect = 1e-07 Identities = 29/62 (46%), Positives = 37/62 (59%), Gaps = 3/62 (4%) Frame = +3
Query: 414 LPIVRTGQTSNGFRNYE---CPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCP 584 LP+VR + SN + E C +CL+ QA D A SL C H FHL CI WL ++SCP Sbjct: 158 LPVVRFTERSNVDASGELIACSVCLQEFQAGDSARSLPVCRHTFHLPCIDGWLLRHASCP 217
Query: 585 VC 590 +C Sbjct: 218 LC 219
>tr|B6SWY2|B6SWY2_MAIZE Protein binding protein OS=Zea mays PE=2 SV=1 Length = 349
Score = 59.7 bits (143), Expect = 1e-07 Identities = 30/80 (37%), Positives = 40/80 (50%) Frame = +3
Query: 351 NIAATHEGQATEQELQQHPPWLPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNH 530 N A H ++E + P + I G N CP+CLE A ++A + PC H Sbjct: 186 NDAGRHGTPPAKKEAVEAMPTVEIA--GGNGNDDDTASCPVCLEDYAAGERAREM-PCRH 242
Query: 531 AFHLQCITSWLNLNSSCPVC 590 FH CI WL ++SSCPVC Sbjct: 243 RFHSNCIVPWLEMHSSCPVC 262
>tr|A9P156|A9P156_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 186
Score = 59.7 bits (143), Expect = 1e-07 Identities = 24/50 (48%), Positives = 32/50 (64%) Frame = +3
Query: 441 SNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPVC 590 S G N EC +CLEI Q D+ + C+HAFH+QC +WL+ S CP+C Sbjct: 84 SRGGGNAECAVCLEIFQNGDRCRVIPVCSHAFHVQCADAWLSKCSVCPIC 133
>tr|A9RZM7|A9RZM7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_27893 PE=4 SV=1 Length = 76
Score = 59.3 bits (142), Expect = 2e-07 Identities = 23/53 (43%), Positives = 36/53 (67%) Frame = +3
Query: 453 RNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPVCYHTSISS 611 R +EC +CLE + +K +L C+H+FHL CI WL+ +S+CP+C TS+ + Sbjct: 22 RGFECAVCLEEFELGEKGRTLPKCDHSFHLDCIDMWLHSHSTCPLC-RTSVGA 73
>tr|Q6ZJI1|Q6ZJI1_ORYSJ Os08g0550400 protein OS=Oryza sativa subsp. japonica GN=OJ1479_B11.22 PE=2 SV=1 Length = 260
Score = 58.9 bits (141), Expect = 2e-07 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = +3
Query: 414 LPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPVCY 593 LP+ + G C +CL+ L+ ++A L C H FHL+CI SWL ++SCP+C Sbjct: 185 LPVTTFAAAAGGDDRAGCSVCLQDLEDGERARRLPECGHTFHLRCIDSWLLRHASCPLCR 244
Query: 594 HTSISS 611 T +++ Sbjct: 245 RTVVAA 250
>tr|A2YXW2|A2YXW2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30177 PE=4 SV=1 Length = 257
Score = 58.9 bits (141), Expect = 2e-07 Identities = 24/66 (36%), Positives = 38/66 (57%) Frame = +3
Query: 414 LPIVRTGQTSNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPVCY 593 LP+ + G C +CL+ L+ ++A L C H FHL+CI SWL ++SCP+C Sbjct: 182 LPVTTFAAAAGGDDRAGCSVCLQDLEDGERARRLPECGHTFHLRCIDSWLLRHASCPLCR 241
Query: 594 HTSISS 611 T +++ Sbjct: 242 RTVVAA 247
>tr|Q0WT62|Q0WT62_ARATH RING-H2 zinc finger protein OS=Arabidopsis thaliana GN=At1g72310 PE=2 SV=1 Length = 324
Score = 58.5 bits (140), Expect = 3e-07 Identities = 29/64 (45%), Positives = 37/64 (57%), Gaps = 2/64 (3%) Frame = +3
Query: 414 LPIV--RTGQTSNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPV 587 LPIV R +G EC ICL L DKA L CNH+FH++CI W +S+CP+ Sbjct: 111 LPIVFFRQDSCKDGL---ECSICLSELVKGDKARLLPKCNHSFHVECIDMWFQSHSTCPI 167
Query: 588 CYHT 599 C +T Sbjct: 168 CRNT 171
>tr|A8E124|A8E124_SPIOL NEP1-interacting protein OS=Spinacia oleracea GN=nip PE=2 SV=1 Length = 235
Score = 58.5 bits (140), Expect = 3e-07 Identities = 35/110 (31%), Positives = 49/110 (44%), Gaps = 1/110 (0%) Frame = +3
Query: 264 PLQLSTAQAQ-GRTIINFRGLLIDVTPSWLNIAATHEGQATEQELQQHPPWLPIVRTGQT 440 P LS Q+Q G NF D+T NI T + +L + P + I + Sbjct: 130 PAMLSAVQSQMGAVETNFE----DIT----NIFDTGSVKGLSGDLVEKIPKIKITKNNNN 181
Query: 441 SNGFRNYECPICLEILQASDKASSLLPCNHAFHLQCITSWLNLNSSCPVC 590 C +CL+ Q + SL C+H FHL CI WL ++SCP+C Sbjct: 182 DASGERVSCSVCLQDFQIGETVRSLPDCHHLFHLPCIDKWLLKHASCPLC 231
>tr|A2ZBE2|A2ZBE2_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_35092 PE=4 SV=1 Length = 162
Score = 58.5 bits (140), Expect = 3e-07 Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 6/81 (7%) Frame = +3
Query: 375 QATEQELQQHPPWLPIVRTG------QTSNGFRNYECPICLEILQASDKASSLLPCNHAF 536 Q + + + P LP R T+ G EC +CL+ +A DK ++PC H F Sbjct: 60 QTSNEAADRRPGLLPASRKAIQGLREVTAAGAGEDECAVCLQDFEAGDKLR-MMPCCHTF 118
Query: 537 HLQCITSWLNLNSSCPVCYHT 599 H +CI WL L+ CP+C HT Sbjct: 119 HQRCIFDWLRLSCICPLCRHT 139
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