DK957911 |
Clone id |
TST39A01NGRL0029_J21 |
Library |
TST39 |
Length |
637 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_J21. 5' end sequence. |
Accession |
DK957911 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL128Contig1 |
Sequence |
CACCATTCGTTCAACATCTCTAACTTAGCCTACATTCCTCCGACACCACACTCAACGGTT CTTCCCGAGCGTTTCTAATCCCCAGCCTTCCTGCGTGTTTGCAAGCTATGGAAGGTGTAG TGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCGT CGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAGG GATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAGA TCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCAG TGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGATT TTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGACA ACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCAGA AGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAGG CGATCCTCANGGCCGCACGTGCAGAGACCACGGCGGA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
60 |
Score (bit) |
70.9 |
E-value |
5.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK957911|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0029_J21, 5' (637 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 71 5e-12 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 60 7e-09 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 60 9e-09 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 60 1e-08 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 55 3e-07 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 55 3e-07 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 52 3e-06 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 51 4e-06 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 50 1e-05 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 49 3e-05 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 48 5e-05 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 47 6e-05 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 47 6e-05 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 46 2e-04 sp|O24994|FABH_HELPY 3-oxoacyl-[acyl-carrier-protein] synthase 3... 32 3.6 sp|Q9ZMN0|FABH_HELPJ 3-oxoacyl-[acyl-carrier-protein] synthase 3... 32 3.6
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 70.9 bits (172), Expect = 5e-12 Identities = 32/60 (53%), Positives = 43/60 (71%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 60.5 bits (145), Expect = 7e-09 Identities = 28/48 (58%), Positives = 38/48 (79%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTL 60
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 60.1 bits (144), Expect = 9e-09 Identities = 26/48 (54%), Positives = 39/48 (81%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTL 60
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 59.7 bits (143), Expect = 1e-08 Identities = 26/53 (49%), Positives = 39/53 (73%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRD 560 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASD 70
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 55.1 bits (131), Expect = 3e-07 Identities = 25/59 (42%), Positives = 42/59 (71%) Frame = +3
Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKE 73
>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Antithamnion sp. GN=atpG PE=3 SV=1 Length = 159
Score = 55.1 bits (131), Expect = 3e-07 Identities = 23/48 (47%), Positives = 36/48 (75%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545 +G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSL 65
>sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Galdieria sulphuraria GN=atpG PE=3 SV=1 Length = 157
Score = 51.6 bits (122), Expect = 3e-06 Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 3/62 (4%) Frame = +3
Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVR---DNSDEI 575 G +FDF+ TL IA EFLLL L+ I+++P++KV+D R++ IR+ L D ++E+ Sbjct: 15 GGLFDFDATLSFIALEFLLLTSVLNLIYYQPISKVIDSREDYIRENLNKASLYLDQANEL 74
Query: 576 KK 581 K Sbjct: 75 TK 76
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 51.2 bits (121), Expect = 4e-06 Identities = 21/50 (42%), Positives = 36/50 (72%) Frame = +3
Query: 411 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRD 560 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKE 71
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 50.1 bits (118), Expect = 1e-05 Identities = 21/59 (35%), Positives = 38/59 (64%) Frame = +3
Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIK 578 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVK 74
>sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odontella sinensis GN=atpG PE=3 SV=1 Length = 156
Score = 48.5 bits (114), Expect = 3e-05 Identities = 22/47 (46%), Positives = 33/47 (70%) Frame = +3
Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545 G +FD N TLP++A +FLLLMV L+ I + P+ ++++R E I KL Sbjct: 17 GGLFDINATLPLVAIQFLLLMVLLNVILYSPLLTIIEERKEYILNKL 63
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
87 |
Score (bit) |
108.0 |
E-value |
4.0e-22 |
Report |
|