DK957911
Clone id TST39A01NGRL0029_J21
Library
Length 637
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_J21. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence
CACCATTCGTTCAACATCTCTAACTTAGCCTACATTCCTCCGACACCACACTCAACGGTT
CTTCCCGAGCGTTTCTAATCCCCAGCCTTCCTGCGTGTTTGCAAGCTATGGAAGGTGTAG
TGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTAGCTACAACGCCGTCCCCTGCGT
CGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGATCCCTTAAGCATCAGG
GATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAGCGCATGGCTACCAAGA
TCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATGAATGCCCTCTGGGCAG
TGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAGGGAAAGATTTTCGATT
TTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTCATGGTGACTTTGGACA
ACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGATGAAGCCATCAGGCAGA
AGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTGCAAGAGCAGGCTGAGG
CGATCCTCANGGCCGCACGTGCAGAGACCACGGCGGA
■■Homology search results ■■ -
sp_hit_id P31853
Definition sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea
Align length 60
Score (bit) 70.9
E-value 5.0e-12
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_J21, 5'
(637 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 71 5e-12
sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 60 7e-09
sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 60 9e-09
sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 60 1e-08
sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 55 3e-07
sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 55 3e-07
sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 52 3e-06
sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 51 4e-06
sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 50 1e-05
sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 49 3e-05
sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 48 5e-05
sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 47 6e-05
sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 47 6e-05
sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 46 2e-04
sp|O24994|FABH_HELPY 3-oxoacyl-[acyl-carrier-protein] synthase 3... 32 3.6
sp|Q9ZMN0|FABH_HELPJ 3-oxoacyl-[acyl-carrier-protein] synthase 3... 32 3.6

>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic
OS=Spinacia oleracea GN=ATPG PE=1 SV=2
Length = 222

Score = 70.9 bits (172), Expect = 5e-12
Identities = 32/60 (53%), Positives = 43/60 (71%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+
Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139


>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic
OS=Porphyra yezoensis GN=atpG PE=3 SV=1
Length = 156

Score = 60.5 bits (145), Expect = 7e-09
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545
+G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L
Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTL 60


>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic
OS=Porphyra purpurea GN=atpG PE=3 SV=1
Length = 158

Score = 60.1 bits (144), Expect = 9e-09
Identities = 26/48 (54%), Positives = 39/48 (81%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545
+G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L
Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTL 60


>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic
OS=Guillardia theta GN=atpG PE=3 SV=1
Length = 163

Score = 59.7 bits (143), Expect = 1e-08
Identities = 26/53 (49%), Positives = 39/53 (73%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRD 560
+G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D
Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASD 70


>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic
OS=Cyanidium caldarium GN=atpG PE=3 SV=1
Length = 157

Score = 55.1 bits (131), Expect = 3e-07
Identities = 25/59 (42%), Positives = 42/59 (71%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+
Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKE 73


>sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic
OS=Antithamnion sp. GN=atpG PE=3 SV=1
Length = 159

Score = 55.1 bits (131), Expect = 3e-07
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545
+G +FDFN TLP++A +FL L + L+ I++KP+ K++D+RDE I L
Sbjct: 18 QGGLFDFNATLPLMALQFLALTIILNLIYYKPLGKILDERDEYIANSL 65


>sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic
OS=Galdieria sulphuraria GN=atpG PE=3 SV=1
Length = 157

Score = 51.6 bits (122), Expect = 3e-06
Identities = 26/62 (41%), Positives = 41/62 (66%), Gaps = 3/62 (4%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVR---DNSDEI 575
G +FDF+ TL IA EFLLL L+ I+++P++KV+D R++ IR+ L D ++E+
Sbjct: 15 GGLFDFDATLSFIALEFLLLTSVLNLIYYQPISKVIDSREDYIRENLNKASLYLDQANEL 74

Query: 576 KK 581
K
Sbjct: 75 TK 76


>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp.
(strain PCC 6716) GN=atpG PE=3 SV=1
Length = 159

Score = 51.2 bits (121), Expect = 4e-06
Identities = 21/50 (42%), Positives = 36/50 (72%)
Frame = +3

Query: 411 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRD 560
+FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++
Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKE 71


>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp.
(strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG
PE=3 SV=1
Length = 158

Score = 50.1 bits (118), Expect = 1e-05
Identities = 21/59 (35%), Positives = 38/59 (64%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIK 578
+G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K
Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVK 74


>sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic
OS=Odontella sinensis GN=atpG PE=3 SV=1
Length = 156

Score = 48.5 bits (114), Expect = 3e-05
Identities = 22/47 (46%), Positives = 33/47 (70%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKL 545
G +FD N TLP++A +FLLLMV L+ I + P+ ++++R E I KL
Sbjct: 17 GGLFDINATLPLVAIQFLLLMVLLNVILYSPLLTIIEERKEYILNKL 63


tr_hit_id A9RKV9
Definition tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 87
Score (bit) 108.0
E-value 4.0e-22
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK957911|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_J21, 5'
(637 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella paten... 108 4e-22
tr|A9T949|A9T949_PHYPA Predicted protein OS=Physcomitrella paten... 105 2e-21
tr|A9NNN0|A9NNN0_PICSI Putative uncharacterized protein OS=Picea... 105 3e-21
tr|A9NTG1|A9NTG1_PICSI Putative uncharacterized protein OS=Picea... 102 2e-20
tr|Q1WLX9|Q1WLX9_CHLIN Chloroplast ATP synthase subunit II OS=Ch... 83 1e-14
tr|A8J785|A8J785_CHLRE CF0 ATP synthase subunit II OS=Chlamydomo... 83 1e-14
tr|A9PFE9|A9PFE9_POPTR Putative uncharacterized protein OS=Popul... 83 2e-14
tr|A9PE72|A9PE72_POPTR Putative uncharacterized protein OS=Popul... 83 2e-14
tr|Q9SBM3|Q9SBM3_VOLCA CFO ATP synthase subunit II OS=Volvox car... 82 3e-14
tr|Q7XZD8|Q7XZD8_9CARY Putative uncharacterized protein atpG (Fr... 77 9e-13
tr|A3AGM3|A3AGM3_ORYSJ Putative uncharacterized protein OS=Oryza... 77 1e-12
tr|Q01GZ9|Q01GZ9_OSTTA CFO ATP synthase subunit II (ISS) OS=Ostr... 76 2e-12
tr|A7P5V0|A7P5V0_VITVI Chromosome chr4 scaffold_6, whole genome ... 76 2e-12
tr|A5BZT2|A5BZT2_VITVI Putative uncharacterized protein OS=Vitis... 75 3e-12
tr|Q84PA4|Q84PA4_ORYSJ Os03g0278900 protein OS=Oryza sativa subs... 75 4e-12
tr|A2XF65|A2XF65_ORYSI Putative uncharacterized protein OS=Oryza... 75 4e-12
tr|Q42139|Q42139_ARATH H+-transporting ATP synthase chain9 - lik... 74 1e-11
tr|A4RQK4|A4RQK4_OSTLU F-ATPase family transporter: protons (Mit... 73 1e-11
tr|Q0WMW8|Q0WMW8_ARATH ATPase b'-subunit OS=Arabidopsis thaliana... 72 4e-11
tr|B6T908|B6T908_MAIZE ATP synthase B chain OS=Zea mays PE=2 SV=1 72 4e-11
tr|B6T0F6|B6T0F6_MAIZE ATP synthase B chain OS=Zea mays PE=2 SV=1 72 4e-11
tr|Q94B39|Q94B39_ARATH H+-transporting ATP synthase-like protein... 70 8e-11
tr|Q7XZD7|Q7XZD7_9CARY Putative uncharacterized protein atpG (Fr... 70 8e-11
tr|B7FFG1|B7FFG1_MEDTR Putative uncharacterized protein (Fragmen... 70 1e-10
tr|A6MVW7|A6MVW7_RHDSA ATP synthase CF0 subunit II OS=Rhodomonas... 58 4e-07
tr|A0YJF3|A0YJF3_9CYAN ATP synthase subunit B OS=Lyngbya sp. PCC... 57 7e-07
tr|Q6B8R1|Q6B8R1_GRATL ATP synthase CF0 B' chain subunit II OS=G... 57 1e-06
tr|B4VTZ6|B4VTZ6_9CYAN ATP synthase B/B' CF(0) superfamily OS=Mi... 55 3e-06
tr|Q7XYQ9|Q7XYQ9_BIGNA ATP synthase beta subunit (Fragment) OS=B... 55 3e-06
tr|B2J055|B2J055_NOSP7 H+-transporting two-sector ATPase, B/B' s... 55 4e-06

>tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_115956 PE=3 SV=1
Length = 170

Score = 108 bits (269), Expect = 4e-22
Identities = 58/87 (66%), Positives = 62/87 (71%)
Frame = +3

Query: 318 LRNAAFFAMNALWXXXXXXXXXXXXXXXKGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKP 497
++ A+F A NAL KGKIFDFNLTLPIIA +FLLLMV LDNIWFKP
Sbjct: 1 MKQASFLAFNALMVLPALAEEVEKEP--KGKIFDFNLTLPIIAVQFLLLMVALDNIWFKP 58

Query: 498 VAKVMDDRDEAIRQKLMSVRDNSDEIK 578
VAKVMD RDEAIR KLM VRDNS EIK
Sbjct: 59 VAKVMDSRDEAIRSKLMGVRDNSGEIK 85


>tr|A9T949|A9T949_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_142087 PE=3 SV=1
Length = 158

Score = 105 bits (263), Expect = 2e-21
Identities = 52/59 (88%), Positives = 53/59 (89%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIK 578
KGKIFDFNLTLPIIA +FLLLMV LDNIWFKPVAKVMD RDEAIR KLM VRDNS EIK
Sbjct: 15 KGKIFDFNLTLPIIAVQFLLLMVALDNIWFKPVAKVMDSRDEAIRSKLMGVRDNSGEIK 73


>tr|A9NNN0|A9NNN0_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 223

Score = 105 bits (261), Expect = 3e-21
Identities = 58/97 (59%), Positives = 61/97 (62%)
Frame = +3

Query: 291 ATKITQNPTLRNAAFFAMNALWXXXXXXXXXXXXXXXKGKIFDFNLTLPIIAAEFLLLMV 470
AT I LRN AMN K K+FDFNLTLPII EFLLLMV
Sbjct: 47 ATSIKIPAALRNGCLIAMNTAMVALPALAEETE----KAKLFDFNLTLPIIIGEFLLLMV 102

Query: 471 TLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
LD IWFKP+ K MDDRDEAIRQKL+SVRDNS EIKK
Sbjct: 103 ALDAIWFKPIGKFMDDRDEAIRQKLLSVRDNSSEIKK 139


>tr|A9NTG1|A9NTG1_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 223

Score = 102 bits (254), Expect = 2e-20
Identities = 55/88 (62%), Positives = 58/88 (65%)
Frame = +3

Query: 318 LRNAAFFAMNALWXXXXXXXXXXXXXXXKGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKP 497
LRN AMN K K+FDFNLTLPII EFLLLMV LD IWFKP
Sbjct: 56 LRNGCLIAMNTAMVALPALAEETE----KAKLFDFNLTLPIIIGEFLLLMVALDAIWFKP 111

Query: 498 VAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
+ K MDDRDEAIRQKL+SVRDNS EIKK
Sbjct: 112 IGKFMDDRDEAIRQKLLSVRDNSGEIKK 139


>tr|Q1WLX9|Q1WLX9_CHLIN Chloroplast ATP synthase subunit II
OS=Chlamydomonas incerta GN=AtpG PE=2 SV=1
Length = 209

Score = 83.2 bits (204), Expect = 1e-14
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
GKIFDFNLTLP++A EFLLLMV L+ WF PV KV+D+RD IR KL SV+DN+ ++ K
Sbjct: 65 GKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDK 123


>tr|A8J785|A8J785_CHLRE CF0 ATP synthase subunit II OS=Chlamydomonas
reinhardtii GN=ATPG PE=3 SV=1
Length = 209

Score = 83.2 bits (204), Expect = 1e-14
Identities = 38/59 (64%), Positives = 47/59 (79%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
GKIFDFNLTLP++A EFLLLMV L+ WF PV KV+D+RD IR KL SV+DN+ ++ K
Sbjct: 65 GKIFDFNLTLPVMAGEFLLLMVFLEKTWFTPVGKVLDERDNLIRSKLGSVKDNTGDVDK 123


>tr|A9PFE9|A9PFE9_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 220

Score = 82.8 bits (203), Expect = 2e-14
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
K +FDFNLTLPII EFL+LMV LD IWF P+ MD+RD AI++KL SV+D S+E+K+
Sbjct: 78 KAALFDFNLTLPIIMVEFLVLMVALDKIWFTPLGNFMDERDSAIKEKLSSVKDTSEEVKQ 137


>tr|A9PE72|A9PE72_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 220

Score = 82.8 bits (203), Expect = 2e-14
Identities = 37/60 (61%), Positives = 47/60 (78%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
K +FDFNLTLPII EFL+LMV LD IWF P+ MD+RD AI++KL SV+D S+E+K+
Sbjct: 78 KAALFDFNLTLPIIMVEFLVLMVALDKIWFSPLGNFMDERDAAIKEKLSSVKDTSEEVKQ 137


>tr|Q9SBM3|Q9SBM3_VOLCA CFO ATP synthase subunit II OS=Volvox
carteri f. nagariensis GN=atpG PE=2 SV=1
Length = 210

Score = 82.0 bits (201), Expect = 3e-14
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +3

Query: 405 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 581
GKIFDFNLTLP++A EFLLLMV L+ WF PV KV+D+RD IR KL +V+DN+ ++ K
Sbjct: 66 GKIFDFNLTLPVMAGEFLLLMVFLEKAWFTPVGKVLDERDNLIRSKLGAVKDNTGDVDK 124


>tr|Q7XZD8|Q7XZD8_9CARY Putative uncharacterized protein atpG
(Fragment) OS=Drosera tokaiensis GN=atpG PE=2 SV=1
Length = 137

Score = 77.0 bits (188), Expect = 9e-13
Identities = 37/59 (62%), Positives = 47/59 (79%)
Frame = +3

Query: 402 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIK 578
K ++FDF+LTLPIIAAEFLLLM LD I++ P+ MD RD AI+ KL +V+DNS+EIK
Sbjct: 68 KAQLFDFDLTLPIIAAEFLLLMFALDKIYYTPLGDFMDARDAAIKAKLEAVKDNSEEIK 126