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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957924
Clone id TST39A01NGRL0029_K10
Library
Length 607
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_K10. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GTGGCACCTCTCTCTCTCTCTCTCTCTCTCGTATGGCAGCATCCGATGAGGAGGAGAGTT
CCAGTCGTCGGCGGCAGAGGATTGCAGAACGAAGGGGTGGATTCAGCCCGAGCGGACGGC
CTCTCGACTATCAAGGAAGCCAGAATTGGGAGACTCGAATTGCCACTCGCACTTTCTATG
GAGCTGCAATTGGAGCTCTTGCTGGACTGGGAGTGGGAATCTACAAAAAGCAGAATCCTT
TTATATGGTCTACATCAATGGGAGGCAATTGGGCGATAGCTACATGCGTCTTTTGTGGGT
TTCAAGAGTTGACTCGGGAAATTCGAGCTGCTGAGCCAGATGATTGGGCTAATTGCTTTC
TTGGTGGGCTTGCGAGTGGAGCTTTGCTGGGCAGGATTCAAGGTGGGCCTGCAAGAGCTC
TTCCAATGGCTGTACTGTTCGCTTTTGTTGGTACAGGAATAAACCATGGTGCGGATCTTT
TCAAAGAATACAGGCTGCAACGTCTGTTGGCCTCTCTACCTTCTGAAGACGCCCTGCCTC
CTGCCCCTTCAGCGGANAGGGGATTTAAAGCTGAGAGGGAATCAAAGCGAAGTGCATGGC
TTGATTT
■■Homology search results ■■ -
sp_hit_id Q921V5
Definition sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase OS=Mus musculus
Align length 66
Score (bit) 33.9
E-value 0.66
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957924|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_K10, 5'
         (607 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein 2-beta-N-a...    34   0.66 
sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein 2-beta-N-ace...    33   0.86 
sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium ...    31   5.6  
sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita G...    31   5.6  
sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus muscul...    30   7.3  
sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicas...    30   7.4  
sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicas...    30   7.4  
sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicas...    30   7.4  
sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1 OS=Chl...    30   9.6  

>sp|Q921V5|MGAT2_MOUSE Alpha-1,6-mannosyl-glycoprotein
           2-beta-N-acetylglucosaminyltransferase OS=Mus musculus
           GN=Mgat2 PE=2 SV=1
          Length = 442

 Score = 33.9 bits (76), Expect = 0.66
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 428 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 252
           H K +CRP+   AQ  S     K+ + P   +    FP   + P +    +  I  H  C
Sbjct: 376 HHKKTCRPSTQSAQIESLLNSNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435

Query: 251 RPYKRI 234
           + Y+R+
Sbjct: 436 KSYRRL 441


>sp|Q09326|MGAT2_RAT Alpha-1,6-mannosyl-glycoprotein
           2-beta-N-acetylglucosaminyltransferase OS=Rattus
           norvegicus GN=Mgat2 PE=1 SV=1
          Length = 442

 Score = 33.5 bits (75), Expect = 0.86
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 428 HWKSSCRPTLNPAQQSSTRKPTKKAISPIIWLSSSNFPSQLLKPTKDACSYRPIASH-*C 252
           H K +CRP+   AQ  S     K+ + P   +    FP   + P +    +  I  H  C
Sbjct: 376 HHKKTCRPSTQSAQIESLLNNNKQYLFPETLVIGEKFPMAAISPPRKNGGWGDIRDHELC 435

Query: 251 RPYKRI 234
           + Y+R+
Sbjct: 436 KSYRRL 441


>sp|Q67S99|END4_SYMTH Probable endonuclease 4 OS=Symbiobacterium
           thermophilum GN=nfo PE=3 SV=1
          Length = 276

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -2

Query: 453 YQQKRTVQPLEELLQAHLESCPAKLHSQAHQESN*PNHLAQQLE 322
           Y + R V+ L  LL+A+  SCP  L + A   S    HL + +E
Sbjct: 116 YGRARMVETLNRLLEAYTGSCPLLLENTAGMGSELGTHLEELME 159


>sp|O42717|AAPR1_AGRAE Aegerolysin Aa-Pri1 OS=Agrocybe aegerita
           GN=AA-PRI1 PE=2 SV=1
          Length = 145

 Score = 30.8 bits (68), Expect = 5.6
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
 Frame = +2

Query: 170 HFLWSCNWSS---CWTGSGNLQKAESFYMVYINGRQLGDSYMRLLWVSRVDSGN 322
           HF W C W S    WT SG+  K    +MV  +G+ L    +  + V  +  GN
Sbjct: 96  HFYWECPWGSKRNTWTPSGSNTK----WMVEWSGQNLDSGALGTITVDVLRKGN 145


>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus
           GN=Ranbp2 PE=1 SV=1
          Length = 3053

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 17/54 (31%), Positives = 28/54 (51%), Gaps = 4/54 (7%)
 Frame = -3

Query: 494 PVFFEKIRTMVYSCTNKSEQYSH----WKSSCRPTLNPAQQSSTRKPTKKAISP 345
           PV  E ++ M+ S   + E YS     +K+ C  + +   + ST  PTK ++SP
Sbjct: 736 PVPLESVKEMLNSVMQELEDYSEGGTLYKNGCWRSADSELKHSTPSPTKYSLSP 789


>sp|A1ARF8|RUVB_PELPD Holliday junction ATP-dependent DNA helicase
           ruvB OS=Pelobacter propionicus (strain DSM 2379) GN=ruvB
           PE=3 SV=1
          Length = 338

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 519 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 397
           +ERP D+AA +   +PH  LF+ +  R    +EE+L   +E
Sbjct: 88  IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128


>sp|P61532|RUVB_GEOSL Holliday junction ATP-dependent DNA helicase
           ruvB OS=Geobacter sulfurreducens GN=ruvB PE=3 SV=1
          Length = 338

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 519 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 397
           +ERP D+AA +   +PH  LF+ +  R    +EE+L   +E
Sbjct: 88  IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 128


>sp|Q39XN6|RUVB_GEOMG Holliday junction ATP-dependent DNA helicase
           ruvB OS=Geobacter metallireducens (strain GS-15 / ATCC
           53774 / DSM 7210) GN=ruvB PE=3 SV=1
          Length = 338

 Score = 30.4 bits (67), Expect = 7.4
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -2

Query: 519 VERPTDVAACIL*KDPHHGLFLYQQKRTVQPLEELLQAHLE 397
           +ERP D+AA +   +PH  LF+ +  R    +EE+L   +E
Sbjct: 87  IERPGDLAAILTNLEPHDVLFIDEIHRLSHVVEEILYPAME 127


>sp|Q9Z9G5|PMP1_CHLPN Probable outer membrane protein pmp1
           OS=Chlamydia pneumoniae GN=pmp1 PE=2 SV=1
          Length = 922

 Score = 30.0 bits (66), Expect = 9.6
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +2

Query: 170 HFLWSCNWSSCWTGSGNLQKAESFYMVYINGR----QLGDSYMRLLWVSRVD 313
           H+ +  NW   WTG+GN  K   F+   IN +    + G+    +LW + VD
Sbjct: 557 HYGFQGNWKLAWTGTGN--KVGEFFWDKINYKPRPEKEGNLVPNILWGNAVD 606
tr_hit_id A9SEY9
Definition tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 165
Score (bit) 103.0
E-value 6.0e-21
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957924|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_K10, 5'
         (607 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella paten...   103   6e-21
tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea...    86   1e-15
tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana GN=At3g...    46   0.002
tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein OS=Arabi...    46   0.002
tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza...    44   0.006
tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane trans...    44   0.007
tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subs...    44   0.010
tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, who...    42   0.036
tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein OS=Branc...    36   1.5  
tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae G...    34   7.5  
tr|A7TK46|A7TK46_VANPO Putative uncharacterized protein OS=Vande...    34   7.5  
tr|Q3U5X7|Q3U5X7_MOUSE Putative uncharacterized protein OS=Mus m...    34   7.6  
tr|Q3TXN3|Q3TXN3_MOUSE Putative uncharacterized protein OS=Mus m...    34   7.6  
tr|Q3TBY6|Q3TBY6_MOUSE Putative uncharacterized protein OS=Mus m...    34   7.6  
tr|Q2GEZ4|Q2GEZ4_NEOSM Putative uncharacterized protein OS=Neori...    33   9.8  
tr|Q2GTY0|Q2GTY0_CHAGB Putative uncharacterized protein OS=Chaet...    33   9.8  

>tr|A9SEY9|A9SEY9_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233124 PE=4 SV=1
          Length = 323

 Score =  103 bits (258), Expect = 6e-21
 Identities = 59/165 (35%), Positives = 82/165 (49%)
 Frame = +3

Query: 105 SPSGRPLDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSMGGNWAIAT 284
           SP GRPLDY+GS  W  RI +++                 + Q       S+G N+ IA 
Sbjct: 21  SPGGRPLDYRGSDGWGYRILSKSLAAGGFGAGAGLLVGAVRGQPALRLGLSVGTNFLIAA 80

Query: 285 CVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLFAFVGTGIN 464
             F   QE++RE+RAAEP++  +                GG AR LPM +LFA VGTG+ 
Sbjct: 81  SCFGAAQEISRELRAAEPENLIDAAVGGFASGALLGHFHGGRARTLPMGILFAVVGTGLQ 140

Query: 465 HGADLFKEYRLQRLLASLPSEDALPPAPSAXRGFKAERESKRSAW 599
            GA  +KEYR++  L +LPSE  +  A       K E  ++ S+W
Sbjct: 141 LGAAEYKEYRIRHFLNTLPSEPLIADANVEVPVVKEEETTEESSW 185


>tr|A9NNB0|A9NNB0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 208

 Score = 86.3 bits (212), Expect = 1e-15
 Identities = 61/173 (35%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
 Frame = +3

Query: 96  GGFSPSGRP-----LDYQGSQNWETRIATRTFYXXXXXXXXXXXXXXYKKQNPFIWSTSM 260
           GG  P   P      +Y+GS+ W+ RI   T                 +       S++ 
Sbjct: 6   GGGKPKQEPGRRRVSNYEGSKGWQERIYIPTLTAGVLGGGAGLLGGYSRGHGMARLSSAY 65

Query: 261 GGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMAVLF 440
             N AI T  FCG QEL RE+RAAEP D  N             RIQGG  RA   A +F
Sbjct: 66  AINLAIVTSCFCGAQELVRELRAAEPGDPINSVLGGIASGGFLGRIQGGRPRAFQYAFMF 125

Query: 441 AFVGTGINHGADLFKEYRLQRLLASLPSEDALPPAPSAXRGFKAERESKRSAW 599
           A VGTG+ +GA  F+EYR Q+ L S  S D L          +AE+ S++  W
Sbjct: 126 ALVGTGLQYGAHKFQEYRSQQYLES-SSTDTLG---------EAEKPSEKKWW 168


>tr|Q9LSG5|Q9LSG5_ARATH At2g45250 OS=Arabidopsis thaliana
           GN=At3g25120 PE=2 SV=1
          Length = 189

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +3

Query: 252 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 431
           T    N+AI    +CG +E  R  R +E DD  N             R+QGGP  A+  +
Sbjct: 62  TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLGRLQGGPKGAIRYS 121

Query: 432 VLFAFVGTGINH----GADLFKEYR 494
           ++FA VGT  ++    G  + + YR
Sbjct: 122 LVFAAVGTAFDYATLKGKPMLESYR 146


>tr|Q8LDN1|Q8LDN1_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 189

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 4/85 (4%)
 Frame = +3

Query: 252 TSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPMA 431
           T    N+AI    +CG +E  R  R +E DD  N             R+QGGP  A+  +
Sbjct: 62  TVYAANFAIVAGCYCGARESVRITRRSEHDDLMNSAIGGLFSGALLARLQGGPKGAIRYS 121

Query: 432 VLFAFVGTGINH----GADLFKEYR 494
           ++FA VGT  ++    G  + + YR
Sbjct: 122 LVFAAVGTAFDYATLKGKPILESYR 146


>tr|A2XSI2|A2XSI2_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_15570 PE=4 SV=1
          Length = 197

 Score = 44.3 bits (103), Expect = 0.006
 Identities = 26/75 (34%), Positives = 36/75 (48%)
 Frame = +3

Query: 249 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 428
           + +   N AI    + G +EL R+ RA+ PDD  N             RIQGG   A+  
Sbjct: 58  TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117

Query: 429 AVLFAFVGTGINHGA 473
           AV FA  GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|B6TSG2|B6TSG2_MAIZE Mitochondrial import inner membrane
           translocase subunit Tim17 family protein OS=Zea mays
           PE=2 SV=1
          Length = 193

 Score = 43.9 bits (102), Expect = 0.007
 Identities = 26/75 (34%), Positives = 35/75 (46%)
 Frame = +3

Query: 249 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 428
           + +   N AI    + G +EL R+ RA  PDD  N             RIQGG   A+  
Sbjct: 58  AVTYAANLAIVAGCYGGARELARDARATTPDDPMNSVVGGLASGAVLGRIQGGHFGAVKY 117

Query: 429 AVLFAFVGTGINHGA 473
           AV FA  GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|Q7XMJ0|Q7XMJ0_ORYSJ Os04g0376100 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBb0006N15.9 PE=2 SV=2
          Length = 197

 Score = 43.5 bits (101), Expect = 0.010
 Identities = 25/75 (33%), Positives = 36/75 (48%)
 Frame = +3

Query: 249 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 428
           + +   N AI    + G +EL R+ RA+ PDD  N             R+QGG   A+  
Sbjct: 58  TATYAANLAIVAGCYGGARELARDARASTPDDPMNSVVGGLASGAVLGRLQGGHFGAVKY 117

Query: 429 AVLFAFVGTGINHGA 473
           AV FA  GT +++ A
Sbjct: 118 AVTFAAAGTALDYAA 132


>tr|A7QZ83|A7QZ83_VITVI Chromosome undetermined scaffold_267, whole
           genome shotgun sequence OS=Vitis vinifera
           GN=GSVIVT00010538001 PE=4 SV=1
          Length = 193

 Score = 41.6 bits (96), Expect = 0.036
 Identities = 22/72 (30%), Positives = 34/72 (47%)
 Frame = +3

Query: 249 STSMGGNWAIATCVFCGFQELTREIRAAEPDDWANCFXXXXXXXXXXXRIQGGPARALPM 428
           S +   N+AI T  +CG +E  R  R   PDD  +              +QGG A A+  
Sbjct: 57  SATYAANFAIVTGCYCGAREFVRRNRGTGPDDLISSAVGGFGSGAILGCLQGGRAGAVRY 116

Query: 429 AVLFAFVGTGIN 464
           +V+F+  GT ++
Sbjct: 117 SVMFSVAGTSVD 128


>tr|B6LDT0|B6LDT0_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_69368 PE=4 SV=1
          Length = 823

 Score = 36.2 bits (82), Expect = 1.5
 Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 11/69 (15%)
 Frame = -3

Query: 470 TMVYSCTNKSEQYSHWKSSCRPTLNPAQQSS-----------TRKPTKKAISPIIWLSSS 324
           ++ Y+ TNK+ Q S +  +CR + N   Q S             +PTK + S + WL  S
Sbjct: 607 SLSYTSTNKTVQQSCYLPACRTSTNQTVQQSCYLVGAVPQLVVHQPTKLSNSLVTWLVLS 666

Query: 323 NFPSQLLKP 297
           + PS + KP
Sbjct: 667 HNPSYINKP 675


>tr|Q2TWB1|Q2TWB1_ASPOR Predicted protein OS=Aspergillus oryzae
           GN=AO090010000633 PE=4 SV=1
          Length = 620

 Score = 33.9 bits (76), Expect = 7.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 102 IHPFVLQSSAADDWNSPPHRMLPYERERERE 10
           I PF+ ++ A   W SPP+ M P +R+R R+
Sbjct: 16  IFPFIARTQAPHTWKSPPYGMTPRQRKRWRQ 46