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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK957936
Clone id TST39A01NGRL0029_K22
Library
Length 605
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_K22. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GACCAACGGTTTATCAGATCAGGGCTGGTTCTACTTTCCTCTTGTGAAGGACATGGGTGC
CGGTCAGAGCCGTGATGGTGAGCTTCGCTCAGATTCTGAAGAAGAAGAGGAGGAGGAAGA
AGACGAACAAGAAATTAAGCAGAAGTCTGCTGTTTCACCCGCTTCTTCCTCGAAATCCAG
CACGCGGCAAAGTTTTGCTTCTGCAAGCTCCAAGGATGGGCTCCAAAGCATCGGCTCTAA
ATTCGATTCTCTTACCTTGGCAGGCAAGCGAGTGGCCAAAGGCCCTCAAAAGGCCAAGCT
TTACCGCCATCTTGGAGGTAATACACCTAAAGCACAATGGGTTGTTGCGGACAAAGCTGT
TTCTTGGGAGTTTACCAGAGATGGAGATGATCATGACGAAGATGAAGATGACGACGGGGA
TGGTGTGAGTGGATCGTGGAAGACATGGTATCTTTTGGTTGGTAGCAGGGTGAGTGCTCG
TGTTGGTGAGAAGCTGCAAGCAAAATTCTTTGGAGAGCAGCTGCGCGTTGACTTTGTGTA
CTATGGTGTGTGGGCACTGAAGTTCTCCACTCGCTTAGAGTTTCAAGACTTTGAGACAGA
GTTTC
■■Homology search results ■■ -
sp_hit_id P40781
Definition sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
Align length 32
Score (bit) 40.4
E-value 0.007
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_K22, 5'
         (605 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus GN=CY...    40   0.007
sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2 OS...    32   3.3  
sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2 OS...    30   7.3  
sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2      30   9.5  
sp|Q2QL99|CAZA2_MONDO F-actin-capping protein subunit alpha-2 OS...    30   9.5  
sp|Q2QL78|CAZA2_DIDMA F-actin-capping protein subunit alpha-2 OS...    30   9.5  
sp|P26179|BCHZ_RHOCA Chlorophyllide reductase subunit Z OS=Rhodo...    30   9.5  

>sp|P40781|CYPR4_CYNCA Protein CYPRO4 OS=Cynara cardunculus
           GN=CYPRO4 PE=2 SV=1
          Length = 501

 Score = 40.4 bits (93), Expect = 0.007
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = +2

Query: 509 FGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
           FG+Q RVDFV  GVWALKF    ++++F T F
Sbjct: 2   FGDQRRVDFVDSGVWALKFMRDEDYREFVTRF 33


>sp|Q07E00|CAZA2_ORNAN F-actin-capping protein subunit alpha-2
           OS=Ornithorhynchus anatinus GN=CAPZA2 PE=3 SV=3
          Length = 286

 Score = 31.6 bits (70), Expect = 3.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 217 WAPKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 318
           W PK+R+  +F +L ++A+  RP + +    SWR
Sbjct: 88  WDPKNRVSFKFDHLRKEATDPRPQEPENAVESWR 121


>sp|A4D7S9|CAZA2_MACEU F-actin-capping protein subunit alpha-2
           OS=Macropus eugenii GN=CAPZA2 PE=3 SV=1
          Length = 286

 Score = 30.4 bits (67), Expect = 7.3
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 PKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 318
           PK+R+  +F +L ++A+  RP +G+    SWR
Sbjct: 90  PKNRVSFKFDHLRKEATDPRPCEGENAIESWR 121


>sp|Q9UKZ4|TEN1_HUMAN Teneurin-1 OS=Homo sapiens GN=ODZ1 PE=1 SV=2
          Length = 2725

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 17/37 (45%), Positives = 18/37 (48%)
 Frame = +3

Query: 444 HGIFWLVAG*VLVLVRSCKQNSLESSCALTLCTMVCG 554
           HG F L AG     V SC      S C+  LCTM CG
Sbjct: 669 HGTFLLDAG-----VCSCDPKWTGSDCSTELCTMECG 700


>sp|Q2QL99|CAZA2_MONDO F-actin-capping protein subunit alpha-2
           OS=Monodelphis domestica GN=CAPZA2 PE=3 SV=3
          Length = 286

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 PKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 318
           PK+R+  +F +L ++A+  RP +G+    SWR
Sbjct: 90  PKNRVSFKFDHLRKEATDPRPYEGENAIESWR 121


>sp|Q2QL78|CAZA2_DIDMA F-actin-capping protein subunit alpha-2
           OS=Didelphis marsupialis virginiana GN=CAPZA2 PE=3 SV=3
          Length = 286

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +1

Query: 223 PKHRL*IRFSYLGRQASGQRPSKGQALPPSWR 318
           PK+R+  +F +L ++A+  RP +G+    SWR
Sbjct: 90  PKNRVSFKFDHLRKEATDPRPYEGENAIESWR 121


>sp|P26179|BCHZ_RHOCA Chlorophyllide reductase subunit Z
           OS=Rhodobacter capsulatus GN=bchZ PE=3 SV=1
          Length = 490

 Score = 30.0 bits (66), Expect = 9.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +2

Query: 284 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFT 376
           PQ   L R L     + QW  AD+A++W FT
Sbjct: 106 PQGTNLQRFLARTIDEDQWQCADRAMTWLFT 136
tr_hit_id Q9LJK5
Definition tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
Align length 106
Score (bit) 94.7
E-value 4.0e-18
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK957936|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_K22, 5'
         (605 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana GN=At...    95   4e-18
tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2...    90   9e-17
tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4...    90   1e-16
tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella paten...    89   2e-16
tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome...    89   3e-16
tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis...    89   3e-16
tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=de...    82   2e-14
tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragmen...    79   2e-13
tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            77   1e-12
tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana ...    75   2e-12
tr|Q6ETM2|Q6ETM2_ORYSJ Os02g0178500 protein OS=Oryza sativa subs...    75   4e-12
tr|A9U2M9|A9U2M9_PHYPA Predicted protein OS=Physcomitrella paten...    71   4e-11
tr|B6UDP8|B6UDP8_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            64   5e-09
tr|B6UBL0|B6UBL0_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1            64   5e-09
tr|A9SNF7|A9SNF7_PHYPA Predicted protein OS=Physcomitrella paten...    64   9e-09
tr|Q6K4M9|Q6K4M9_ORYSJ Os02g0789600 protein OS=Oryza sativa subs...    55   2e-06
tr|A2XAF1|A2XAF1_ORYSI Putative uncharacterized protein OS=Oryza...    55   2e-06
tr|A3AC52|A3AC52_ORYSJ Putative uncharacterized protein OS=Oryza...    46   0.002
tr|A7P9J1|A7P9J1_VITVI Chromosome chr3 scaffold_8, whole genome ...    40   0.14 
tr|A5BIB3|A5BIB3_VITVI Putative uncharacterized protein OS=Vitis...    37   1.2  
tr|A6DXQ1|A6DXQ1_9RHOB Putative cytochrome P450 OS=Roseovarius s...    35   3.4  

>tr|Q9LJK5|Q9LJK5_ARATH Dem protein OS=Arabidopsis thaliana
           GN=At3g19240 PE=4 SV=1
          Length = 648

 Score = 94.7 bits (234), Expect = 4e-18
 Identities = 48/106 (45%), Positives = 63/106 (59%), Gaps = 3/106 (2%)
 Frame = +2

Query: 296 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVS---GSWKTWYLLVGS 466
           KLYRH+GGNTPKA+W+V+DK  S++F +                    G    W+L VG+
Sbjct: 90  KLYRHIGGNTPKAKWIVSDKMTSYKFVKTSSVDGEDIDDYDDCEESGEGGESFWFLGVGT 149

Query: 467 RVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
           +V ARV   +Q K FG+Q RVDFV  GVWALKF T  +++ F T F
Sbjct: 150 KVKARVSTDMQLKMFGDQRRVDFVSNGVWALKFLTDEDYRKFVTRF 195


>tr|Q6VVW7|Q6VVW7_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=2
           SV=1
          Length = 639

 Score = 90.1 bits (222), Expect = 9e-17
 Identities = 43/103 (41%), Positives = 59/103 (57%)
 Frame = +2

Query: 296 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 475
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 476 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
            RV   +Q K FG+Q RVDFV  GVWALKF    E+++F T+F
Sbjct: 141 VRVSTDMQLKMFGDQRRVDFVDNGVWALKFFVDDEYRNFITKF 183


>tr|Q6VVW8|Q6VVW8_SOLLC DEM2 OS=Solanum lycopersicum GN=Dem2 PE=4
           SV=1
          Length = 639

 Score = 89.7 bits (221), Expect = 1e-16
 Identities = 42/103 (40%), Positives = 59/103 (57%)
 Frame = +2

Query: 296 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 475
           KLY H+GGNTPKA+W+++ K  ++EF +                 G    W L VG ++ 
Sbjct: 81  KLYLHVGGNTPKAKWIISQKLTNYEFVKTLKIGGDDEDDYGSSSGGDEGFWVLKVGKKIK 140

Query: 476 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
            RV   +Q K FG+Q R+DFV  GVWALKF    E+++F T+F
Sbjct: 141 VRVSTDMQLKMFGDQRRIDFVDNGVWALKFFVDDEYRNFITKF 183


>tr|A9TTW4|A9TTW4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_198241 PE=4 SV=1
          Length = 546

 Score = 89.4 bits (220), Expect = 2e-16
 Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 7/112 (6%)
 Frame = +2

Query: 290 KAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWK-------TW 448
           + KLY+H+GG TP A+WV  +K + +EF R                 G WK       +W
Sbjct: 3   RVKLYQHVGGTTPAAKWVPVEKQIGYEFVREDEEDD----------DGEWKLNTKNFRSW 52

Query: 449 YLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
            LLVG +  A V + LQAKFF +QLRVDF++ GVWA+KF    ++  F  ++
Sbjct: 53  LLLVGGKFGAPVDDNLQAKFFDDQLRVDFIWKGVWAMKFMNSTDYHTFVEKY 104


>tr|A7NTV6|A7NTV6_VITVI Chromosome chr18 scaffold_1, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00014814001
           PE=4 SV=1
          Length = 632

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +2

Query: 284 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 460
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 461 GSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++F  +F
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKF 175


>tr|A5AH24|A5AH24_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043502 PE=4 SV=1
          Length = 632

 Score = 88.6 bits (218), Expect = 3e-16
 Identities = 46/108 (42%), Positives = 64/108 (59%), Gaps = 1/108 (0%)
 Frame = +2

Query: 284 PQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSG-SWKTWYLLV 460
           P   KLY ++GGNTPKA+WV ++K  S+ F +                 G SW  W L V
Sbjct: 70  PNAVKLYLYIGGNTPKAKWVTSEKLTSYSFLKTCGNGGSDDDEQDDEEGGESW--WILKV 127

Query: 461 GSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDFETEF 604
           GS+V A+V  ++Q K FG+Q RVDFV  GVWA+KF +  E+++F  +F
Sbjct: 128 GSKVRAKVALEMQLKTFGDQCRVDFVSQGVWAMKFFSEDEYRNFVGKF 175


>tr|O04394|O04394_SOLLC Dem protein OS=Solanum lycopersicum GN=dem
           PE=2 SV=1
          Length = 644

 Score = 82.4 bits (202), Expect = 2e-14
 Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 4/128 (3%)
 Frame = +2

Query: 221 LQSIGSKFDSLTLA-GKRVAKGP---QKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXX 388
           L  + +K  +L L  G   AK P      KLY H+GGNT  ++WVV+DK  ++ F +   
Sbjct: 58  LDDVEAKLKALKLKYGTPHAKTPTAKNAVKLYLHVGGNTANSKWVVSDKVTAYSFVKSGS 117

Query: 389 XXXXXXXXXXXXVSGSWKTWYLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFS 568
                          +W  W L +GS+V A++ E LQ K F EQ RVDFV  GVWA++F 
Sbjct: 118 EDGSDDDENEETEENAW--WVLKIGSKVRAKIDENLQLKAFKEQKRVDFVANGVWAVRFF 175

Query: 569 TRLEFQDF 592
              E++ F
Sbjct: 176 GEEEYKAF 183


>tr|B7FFC8|B7FFC8_MEDTR Putative uncharacterized protein (Fragment)
           OS=Medicago truncatula PE=2 SV=1
          Length = 237

 Score = 79.3 bits (194), Expect = 2e-13
 Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
 Frame = +2

Query: 221 LQSIGSKFDSLTLAGKRVAKGPQKAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXX 400
           +  + +K  +L L      + P   KL+ H+GGN+P A+WV+++K  ++ F +       
Sbjct: 47  VDEVEAKLKALKLKYAVKNQNPNAVKLHLHIGGNSPNAKWVISEKFTTYSFVKTRCVGGN 106

Query: 401 XXXXXXXXVSGSWKT----WYLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFS 568
                     G        W L +GS++ ++VG ++Q K   +Q RVDF+  GVWA+KF 
Sbjct: 107 SDDDEDEEEDGDDDADEGFWVLKIGSKIRSKVGGEMQLKTLADQRRVDFIAKGVWAMKFF 166

Query: 569 TRLEFQDFETEF 604
           T  +F  F  +F
Sbjct: 167 TEQDFDAFLVKF 178


>tr|B6UCN7|B6UCN7_MAIZE Protein CYPRO4 OS=Zea mays PE=2 SV=1
          Length = 655

 Score = 76.6 bits (187), Expect = 1e-12
 Identities = 42/99 (42%), Positives = 55/99 (55%)
 Frame = +2

Query: 296 KLYRHLGGNTPKAQWVVADKAVSWEFTRXXXXXXXXXXXXXXXVSGSWKTWYLLVGSRVS 475
           KLY H+GG++P A+W+V+D+  +  F R                +     W L+VGS++ 
Sbjct: 95  KLYLHIGGSSPSAKWIVSDRLAAASFVRAGAGAGDGDDEDDDAPAAGGP-WSLVVGSKIR 153

Query: 476 ARVGEKLQAKFFGEQLRVDFVYYGVWALKFSTRLEFQDF 592
           ARVG +LQ K F  Q RVDFV  GVWALKF     F DF
Sbjct: 154 ARVGPELQLKAFPAQRRVDFVADGVWALKFLHSDGFGDF 192


>tr|Q9SZB7|Q9SZB7_ARATH Dem-like protein OS=Arabidopsis thaliana
           GN=F17M5.160 PE=2 SV=1
          Length = 645

 Score = 75.5 bits (184), Expect = 2e-12
 Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 4/132 (3%)
 Frame = +2

Query: 221 LQSIGSKFDSLTLAGKRVAKGPQ---KAKLYRHLGGNTPKAQWVVADKAVSWEFTRXXXX 391
           L  + +K  +L L        P     A+L+R++ GNTPKA+WV A+K  ++ F +    
Sbjct: 63  LDDVEAKLQALKLKYPLTQSAPSTQNSARLFRYINGNTPKAKWVTAEKLTAYCFVKTNKG 122

Query: 392 XXXXXXXXXXX-VSGSWKTWYLLVGSRVSARVGEKLQAKFFGEQLRVDFVYYGVWALKFS 568
                       V   W  W L VGS++  +V +++Q K + +Q RVDFV   VWA+KF+
Sbjct: 123 DEDDEDDDENGDVENEW--WILKVGSKIREKVSDEMQLKAYKDQRRVDFVAKAVWAMKFA 180

Query: 569 TRLEFQDFETEF 604
           +  +F  F + +
Sbjct: 181 SSEDFSVFVSSY 192