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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958033
Clone id TST39A01NGRL0029_P02
Library
Length 542
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0029_P02. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
GCAATATGCAGGAGACTATGATCCTGGCCATCACGGTGGTGGTGGCGAGCATCATGGTGG
GGTGCCCCCCCATGTGGCCGCGGCCTCCTATGATCAGCATGAGCACCCGGGACAGATGCA
TGCAGGACCACCCCCTGTTCATGCAGGTTACGGTGGGCTGGAGCAGCAGCAGCACCACCA
TGGTGGGGCTCCACCTGCCCATGCCCATGAGCCGCCCCCACCCCACCATGAAGGCCCCAT
TGAGAAGATGAAACACAAGATGAAGGGTGGCGACGATGACAGCAGCTCCAGCAGCAGCGA
AAGTGATGGGGAAGGAGGGCGCAGGAAGAAGAAACATGGCCTCTTCTAAGCAACTTGCTC
CTTGCTTGTTTTTGACATGATCTTGTGTTTGTATGTAATGTCGCTTTTCATCTCGGCTAT
ATGAGATGGGTTCAAAATGTGGCTGCATATCGACCTACGTCATTTTCATTTCACTATATA
TGGTATTATGAATAAAAAAAATGGCCTTGCAGTCTAAAAAAAAAAAAAAAAAAAAAAAAA
AA
■■Homology search results ■■ -
sp_hit_id Q69ZH9
Definition sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus musculus
Align length 33
Score (bit) 31.2
E-value 3.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958033|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_P02, 5'
         (515 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus mu...    31   3.0  
sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HS...    31   3.9  

>sp|Q69ZH9|RHG23_MOUSE Rho GTPase-activating protein 23 OS=Mus
           musculus GN=Arhgap23 PE=2 SV=2
          Length = 1483

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 42  VASIMVGCPPM-WPRPPMISMSTRDRCMQDHPL 137
           VA  +VG PP   PRPP + +  RD C    PL
Sbjct: 4   VAFCLVGIPPRPEPRPPQLPLGPRDGCSSGRPL 36


>sp|Q5QA93|HSV2_PICAN SVP1-like protein 2 OS=Pichia angusta GN=HSV2
           PE=3 SV=1
          Length = 360

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -1

Query: 407 KATLHT-NTRSCQKQARSKLLRRGHVSSSCALLPHHFRCCWS 285
           K TLH  N  +   Q  S +  R H+ S+  L+P +FR  WS
Sbjct: 259 KNTLHVYNLTAADPQPESAMANRLHLLSAVPLMPTYFRSVWS 300
tr_hit_id Q6QDC8
Definition tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus
Align length 16
Score (bit) 33.9
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958033|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0029_P02, 5'
         (515 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus...    34   4.9  
tr|Q9VYV7|Q9VYV7_DROME Phosphorylase kinase gamma OS=Drosophila ...    33   6.4  
tr|Q9I7D0|Q9I7D0_DROME Phosphorylase kinase gamma, isoform A OS=...    33   6.4  
tr|Q961E7|Q961E7_DROME Phosphorylase kinase gamma, isoform B OS=...    33   6.4  
tr|Q7K4Y9|Q7K4Y9_DROME GH22314p OS=Drosophila melanogaster GN=Ph...    33   6.4  
tr|Q29JA5|Q29JA5_DROPS GA14880 OS=Drosophila pseudoobscura pseud...    33   6.4  
tr|B4R361|B4R361_DROSI GD17041 OS=Drosophila simulans GN=GD17041...    33   6.4  
tr|B4Q1S3|B4Q1S3_DROYA GE15660 OS=Drosophila yakuba GN=GE15660 P...    33   6.4  
tr|B4MT15|B4MT15_DROWI GK20076 OS=Drosophila willistoni GN=GK200...    33   6.4  
tr|B4MAI4|B4MAI4_DROVI GJ15921 OS=Drosophila virilis GN=GJ15921 ...    33   6.4  
tr|B4L681|B4L681_DROMO GI16230 OS=Drosophila mojavensis GN=GI162...    33   6.4  
tr|B4JM18|B4JM18_DROGR GH24413 OS=Drosophila grimshawi GN=GH2441...    33   6.4  
tr|B4IK49|B4IK49_DROSE GM13103 OS=Drosophila sechellia GN=GM1310...    33   6.4  
tr|B4H3T7|B4H3T7_DROPE GL15144 OS=Drosophila persimilis GN=GL151...    33   6.4  
tr|B3NUA3|B3NUA3_DROER GG18438 OS=Drosophila erecta GN=GG18438 P...    33   6.4  
tr|B3MSC4|B3MSC4_DROAN GF20823 OS=Drosophila ananassae GN=GF2082...    33   6.4  
tr|Q5KDR8|Q5KDR8_CRYNE Glutaryl-CoA dehydrogenase, mitochondrial...    33   8.3  

>tr|Q6QDC8|Q6QDC8_MOUSE Putative cyclooxygenase 3 OS=Mus musculus
           GN=Ptgs1 PE=2 SV=1
          Length = 127

 Score = 33.9 bits (76), Expect = 4.9
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = -1

Query: 302 FRCCWSCCHRRHPSSC 255
           F CC SCC RRHP SC
Sbjct: 43  FPCCCSCCCRRHPRSC 58


>tr|Q9VYV7|Q9VYV7_DROME Phosphorylase kinase gamma OS=Drosophila
           melanogaster GN=PhKgamma PE=2 SV=2
          Length = 560

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|Q9I7D0|Q9I7D0_DROME Phosphorylase kinase gamma, isoform A
           OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=2
          Length = 502

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|Q961E7|Q961E7_DROME Phosphorylase kinase gamma, isoform B
           OS=Drosophila melanogaster GN=PhKgamma PE=2 SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|Q7K4Y9|Q7K4Y9_DROME GH22314p OS=Drosophila melanogaster
           GN=PhKgamma PE=2 SV=1
          Length = 560

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|Q29JA5|Q29JA5_DROPS GA14880 OS=Drosophila pseudoobscura
           pseudoobscura GN=GA14880 PE=4 SV=2
          Length = 571

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|B4R361|B4R361_DROSI GD17041 OS=Drosophila simulans GN=GD17041
           PE=4 SV=1
          Length = 593

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 224 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 254


>tr|B4Q1S3|B4Q1S3_DROYA GE15660 OS=Drosophila yakuba GN=GE15660 PE=4
           SV=1
          Length = 606

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|B4MT15|B4MT15_DROWI GK20076 OS=Drosophila willistoni GN=GK20076
           PE=4 SV=1
          Length = 419

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242


>tr|B4MAI4|B4MAI4_DROVI GJ15921 OS=Drosophila virilis GN=GJ15921
           PE=4 SV=1
          Length = 540

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 9   QETMILAITVVVASIMVGCPPMWPRPPMISM 101
           QE  I A  V++ +++VGCPP W R  M+ +
Sbjct: 212 QEVDIWACGVIMFTLLVGCPPFWHRKQMVML 242