| Report |
 BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958058|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_A03, 5'
(622 letters)
Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O49347|PSBY_ARATH Photosystem II core complex proteins psbY, ... 96 1e-19
sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY, ... 90 1e-17
sp|Q4G385|PSBY_EMIHU Photosystem II protein Y OS=Emiliania huxle... 35 0.31
sp|A2BXA4|PSBY_PROM5 Photosystem II protein Y OS=Prochlorococcus... 34 0.53
sp|P59907|PSBY_PROMP Photosystem II protein Y OS=Prochlorococcus... 34 0.69
sp|Q31AA8|PSBY_PROM9 Photosystem II protein Y OS=Prochlorococcus... 34 0.69
sp|A2BRU6|PSBY_PROMS Photosystem II protein Y OS=Prochlorococcus... 33 0.91
sp|A8G5I7|PSBY_PROM2 Photosystem II protein Y OS=Prochlorococcus... 33 1.2
sp|P49543|PSBY_ODOSI Photosystem II protein Y OS=Odontella sinen... 33 1.2
sp|A0T0G0|PSBY_PHATR Photosystem II protein Y OS=Phaeodactylum t... 33 1.5
sp|Q5SNN4|C3H40_ORYSJ Zinc finger CCCH domain-containing protein... 33 1.6
sp|P47775|GPR12_HUMAN Probable G-protein coupled receptor 12 OS=... 32 2.6
sp|Q9Z200|SH2B2_RAT SH2B adapter protein 2 OS=Rattus norvegicus ... 32 3.4
sp|A0T0V3|PSBY_THAPS Photosystem II protein Y OS=Thalassiosira p... 32 3.4
sp|Q5T1R4|ZEP3_HUMAN Transcription factor HIVEP3 OS=Homo sapiens... 31 4.5
sp|Q8N7X1|CX055_HUMAN Putative uncharacterized protein CXorf55 O... 31 4.5
sp|Q6Z358|C3H49_ORYSJ Zinc finger CCCH domain-containing protein... 31 4.5
sp|Q7VQX7|SYR_BLOFL Arginyl-tRNA synthetase OS=Blochmannia flori... 31 5.9
sp|Q8TF17|S3TC2_HUMAN SH3 domain and tetratricopeptide repeats-c... 31 5.9
sp|Q7VD03|PSBY_PROMA Photosystem II protein Y OS=Prochlorococcus... 31 5.9
sp|P51206|PSBY_PORPU Photosystem II protein Y OS=Porphyra purpur... 31 5.9
sp|Q04359|SPO20_YEAST Sporulation-specific protein 20 OS=Sacchar... 30 7.7
sp|Q9KCE0|SLEB_BACHD Spore cortex-lytic enzyme OS=Bacillus halod... 30 7.7
sp|Q82TZ6|RS2_NITEU 30S ribosomal protein S2 OS=Nitrosomonas eur... 30 7.7
sp|Q1XDT1|PSBY_PORYE Photosystem II protein Y OS=Porphyra yezoen... 30 7.7
sp|A7HX96|PLSX_PARL1 Fatty acid/phospholipid synthesis protein p... 30 7.7
sp|Q12774|ARHG5_HUMAN Rho guanine nucleotide exchange factor 5 O... 30 7.7
sp|Q4IL82|INO80_GIBZE Putative DNA helicase INO80 OS=Gibberella ... 30 7.7
sp|A8ALC8|DGTP_CITK8 Deoxyguanosinetriphosphate triphosphohydrol... 30 7.7
>sp|O49347|PSBY_ARATH Photosystem II core complex proteins psbY,
chloroplastic OS=Arabidopsis thaliana GN=PSBY PE=2 SV=1
Length = 189
Score = 95.9 bits (237), Expect = 1e-19
Identities = 56/110 (50%), Positives = 74/110 (67%), Gaps = 2/110 (1%)
Frame = +2
Query: 299 VQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVS 478
+Q++ LA A SD RGL L+ +VPA+ WVL+NILQPAINQ+++M+ SKGIVV
Sbjct: 67 IQQIAQLA----AANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVG 122
Query: 479 LGLGA--AASGVFPGRSDAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
LG+G AASG+ +A + AAA +DSRG LLL V+ PA+ WVL
Sbjct: 123 LGIGGGLAASGLLTPPPEA-YAAAEAAAASSDSRGQLLLIVVTPALLWVL 171
Score = 78.6 bits (192), Expect = 2e-14
Identities = 40/114 (35%), Positives = 65/114 (57%)
Frame = +2
Query: 116 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 295
+D+RGL +L + PA+ WVL+NIL+PA+NQ+++M+ K
Sbjct: 80 SDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRESKGIVVGLGIGGGLAASGLLTPPP 139
Query: 296 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
+ + A SD+RG +L+ + PAL WVL+NILQPA+NQ+++M++
Sbjct: 140 EAYA------AAEAAAASSDSRGQLLLIVVTPALLWVLYNILQPALNQINKMRS 187
>sp|P80470|PSBY_SPIOL Photosystem II core complex proteins psbY,
chloroplastic OS=Spinacia oleracea GN=PSBY PE=1 SV=2
Length = 199
Score = 89.7 bits (221), Expect = 1e-17
Identities = 50/93 (53%), Positives = 65/93 (69%), Gaps = 2/93 (2%)
Frame = +2
Query: 350 SDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT-SKGIVVSLGL-GAAASGVFPGRS 523
SD RGL L+ ++PALGWVLFNILQPA+NQ+++M+ K +V LGL G A SG+
Sbjct: 91 SDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATP 150
Query: 524 DAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
+A Q S A +D+RG LLL V++PAIGWVL
Sbjct: 151 EA-QAASEEIARGSDNRGTLLLLVVLPAIGWVL 182
Score = 85.5 bits (210), Expect = 2e-16
Identities = 46/114 (40%), Positives = 70/114 (61%)
Frame = +2
Query: 116 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXXX 295
+D+RGL +L + PA+GWVLFNIL+PALNQ+++M++ K
Sbjct: 91 SDNRGLALLLPIIPALGWVLFNILQPALNQINKMRNEKKAFIVGLGLSGLATSGLLLATP 150
Query: 296 XVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
Q + + +G SD RG +L+ ++PA+GWVLFNILQPA+NQL++M++
Sbjct: 151 EAQ--AASEEIARG----SDNRGTLLLLVVLPAIGWVLFNILQPALNQLNKMRS 198
Score = 36.6 bits (83), Expect = 0.11
Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Frame = +2
Query: 440 LDRMKTSKGIVVSLGLGAAASGVFP--GRSD---AIQEMSSIAA--ADNDSRGILLLGVL 598
L K G+ + A A VF G D A+Q+++ IAA +D+RG+ LL +
Sbjct: 43 LSNSKLPMGLSPIITAPAIAGAVFATLGSVDPAFAVQQLADIAAEAGTSDNRGLALLLPI 102
Query: 599 IPAIGWVL 622
IPA+GWVL
Sbjct: 103 IPALGWVL 110
>sp|Q4G385|PSBY_EMIHU Photosystem II protein Y OS=Emiliania huxleyi
GN=psbY PE=3 SV=1
Length = 35
Score = 35.0 bits (79), Expect = 0.31
Identities = 18/33 (54%), Positives = 22/33 (66%)
Frame = +2
Query: 119 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRM 217
D+R L+VL +A A W LFNI + AL QL RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
Score = 30.4 bits (67), Expect = 7.7
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +2
Query: 353 DARGLVLVASLVPALGWVLFNILQPAINQLDRM 451
D R LV++ + A W LFNI + A+ QL RM
Sbjct: 2 DTRLLVVLLPVATAAAWALFNIGRLALQQLKRM 34
>sp|A2BXA4|PSBY_PROM5 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9515) GN=psbY PE=3 SV=1
Length = 39
Score = 34.3 bits (77), Expect = 0.53
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +2
Query: 359 RGLVLVASLVPALGWVLFNILQPAINQLDR 448
R LV+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
Score = 31.2 bits (69), Expect = 4.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 125 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 214
R L+V + A+ WV+FNI KPA Q +R
Sbjct: 3 RTLVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|P59907|PSBY_PROMP Photosystem II protein Y OS=Prochlorococcus
marinus subsp. pastoris (strain CCMP1378 / MED4) GN=psbY
PE=3 SV=1
Length = 38
Score = 33.9 bits (76), Expect = 0.69
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 359 RGLVLVASLVPALGWVLFNILQPAINQLDR 448
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
Score = 30.8 bits (68), Expect = 5.9
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 125 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 214
R ++V + A+ WV+FNI KPA Q +R
Sbjct: 3 RAIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|Q31AA8|PSBY_PROM9 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9312) GN=psbY PE=3 SV=1
Length = 37
Score = 33.9 bits (76), Expect = 0.69
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 359 RGLVLVASLVPALGWVLFNILQPAINQLDR 448
R +V+ A ++ A+ WV+FNI +PA Q DR
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDR 32
Score = 33.1 bits (74), Expect = 1.2
Identities = 15/30 (50%), Positives = 19/30 (63%)
Frame = +2
Query: 125 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 214
R ++V + AV WV+FNI KPA Q DR
Sbjct: 3 RAIVVFAPIIAAVAWVVFNIQKPAREQWDR 32
>sp|A2BRU6|PSBY_PROMS Photosystem II protein Y OS=Prochlorococcus
marinus (strain AS9601) GN=psbY PE=3 SV=1
Length = 38
Score = 33.5 bits (75), Expect = 0.91
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 359 RGLVLVASLVPALGWVLFNILQPAINQLDR 448
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
Score = 30.4 bits (67), Expect = 7.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +2
Query: 125 RGLLVLFVLAPAVGWVLFNILKPALNQLDR 214
R ++V + A+ WV+FNI KPA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVIFNIQKPAREQFNR 32
>sp|A8G5I7|PSBY_PROM2 Photosystem II protein Y OS=Prochlorococcus
marinus (strain MIT 9215) GN=psbY PE=3 SV=1
Length = 38
Score = 33.1 bits (74), Expect = 1.2
Identities = 14/30 (46%), Positives = 21/30 (70%)
Frame = +2
Query: 359 RGLVLVASLVPALGWVLFNILQPAINQLDR 448
R +V+ A ++ AL WV+FNI +PA Q +R
Sbjct: 3 RTIVVFAPIIAALAWVVFNIQKPAREQFNR 32
>sp|P49543|PSBY_ODOSI Photosystem II protein Y OS=Odontella sinensis
GN=psbY-A PE=3 SV=1
Length = 36
Score = 33.1 bits (74), Expect = 1.2
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +2
Query: 353 DARGLVLVASLVPALGWVLFNILQPAINQLDRM 451
D+R LV+ A L+ A W LFNI + AI Q+ R+
Sbjct: 2 DSRLLVIAAPLLVAASWALFNIGRLAIQQIQRL 34
>sp|A0T0G0|PSBY_PHATR Photosystem II protein Y OS=Phaeodactylum
tricornutum GN=psbY-A PE=3 SV=1
Length = 36
Score = 32.7 bits (73), Expect = 1.5
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +2
Query: 353 DARGLVLVASLVPALGWVLFNILQPAINQLDRMK 454
D R +V+ A ++ A W LFNI + AI Q+ R+K
Sbjct: 2 DTRLIVIAAPVLVAASWALFNIGRLAIQQIQRLK 35
|
| Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958058|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_A03, 5'
(622 letters)
Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tr|A9SPH7|A9SPH7_PHYPA PsbY photosystem II polypeptide OS=Physco... 137 5e-31
tr|B6SR26|B6SR26_MAIZE Photosystem II core complex proteins psbY... 104 4e-21
tr|A9U315|A9U315_PHYPA Predicted protein (Fragment) OS=Physcomit... 103 8e-21
tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core complex proteins psbY... 102 1e-20
tr|B6SQV2|B6SQV2_MAIZE Photosystem II core complex proteins psbY... 99 3e-19
tr|A9TFS8|A9TFS8_PHYPA Predicted protein (Fragment) OS=Physcomit... 98 3e-19
tr|A9PJP0|A9PJP0_POPJC Putative uncharacterized protein OS=Popul... 98 5e-19
tr|A9PJJ8|A9PJJ8_POPJC Putative uncharacterized protein OS=Popul... 97 6e-19
tr|A9PJ80|A9PJ80_POPJC Putative uncharacterized protein OS=Popul... 97 8e-19
tr|A9PIV1|A9PIV1_POPJC Putative uncharacterized protein OS=Popul... 97 8e-19
tr|A9PJP1|A9PJP1_POPJC Putative uncharacterized protein OS=Popul... 96 1e-18
tr|Q8LAL4|Q8LAL4_ARATH Putative uncharacterized protein OS=Arabi... 96 2e-18
tr|Q549N8|Q549N8_ARATH Putative uncharacterized protein OS=Arabi... 96 2e-18
tr|Q6ZJ41|Q6ZJ41_ORYSJ cDNA clone:001-024-H10, full insert seque... 95 3e-18
tr|Q0J8C7|Q0J8C7_ORYSJ Os08g0119800 protein (Fragment) OS=Oryza ... 95 3e-18
tr|A2YQQ7|A2YQQ7_ORYSI Putative uncharacterized protein OS=Oryza... 95 3e-18
tr|B7FLH1|B7FLH1_MEDTR Putative uncharacterized protein OS=Medic... 95 4e-18
tr|A9NZQ0|A9NZQ0_PICSI Putative uncharacterized protein OS=Picea... 94 5e-18
tr|A9NQA0|A9NQA0_PICSI Putative uncharacterized protein OS=Picea... 94 5e-18
tr|A9NL05|A9NL05_PICSI Putative uncharacterized protein OS=Picea... 94 5e-18
tr|A8JKA1|A8JKA1_CHLRE Ycf32-related polyprotein of photosystem ... 80 7e-14
tr|A4S5C8|A4S5C8_OSTLU Possible psbY, PSII-Y, photosystem II pol... 80 1e-13
tr|A8I003|A8I003_CHLRE Ycf32-related subunit of photosystem II O... 80 1e-13
tr|Q00Y99|Q00Y99_OSTTA Manganese-binding protein PsbY, photosyst... 73 2e-11
tr|Q5K5A8|Q5K5A8_ORYSA PsbY-like protein OS=Oryza sativa GN=MgBP... 72 3e-11
tr|A7P454|A7P454_VITVI Chromosome chr1 scaffold_5, whole genome ... 55 3e-06
tr|Q8TGW9|Q8TGW9_CANAL Putative transcriptional repressor OS=Can... 39 0.32
tr|B4ML41|B4ML41_DROWI GK16823 OS=Drosophila willistoni GN=GK168... 37 0.94
tr|Q5ADP3|Q5ADP3_CANAL Putative uncharacterized protein CYC8 OS=... 36 1.6
tr|A2QK29|A2QK29_ASPNC Similarity to human dynactin-1 OS=Aspergi... 36 2.1
>tr|A9SPH7|A9SPH7_PHYPA PsbY photosystem II polypeptide
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_166016 PE=4 SV=1
Length = 368
Score = 137 bits (345), Expect = 5e-31
Identities = 75/179 (41%), Positives = 115/179 (64%), Gaps = 9/179 (5%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+R + +L L PA+GWVLFNILKPALNQ+D+MK+ K
Sbjct: 91 EGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMKAAKSLVAGAGLGALALVAAPHADA 150
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK------ 454
QE+ +ADS DARGL+++ L+PA+GWVLFNIL+PA+NQ+++M+
Sbjct: 151 --AQEIAQVADS--------DARGLIIIGLLLPAVGWVLFNILRPALNQIEKMQDQGNAA 200
Query: 455 ---TSKGIVVSLGLGAAASGVFPGRSDAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
+G++ +LGLG A+ + P +DA QE++++ AD+DSRG++++G+L+PA+GWVL
Sbjct: 201 AITRKRGVIGALGLGTASLFLAP-HADAAQEIATL--ADSDSRGLIIIGLLLPAVGWVL 256
Score = 117 bits (292), Expect = 7e-25
Identities = 71/192 (36%), Positives = 108/192 (56%), Gaps = 22/192 (11%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS-------VKXXXXXXXXXXXXXX 271
D+D+RGL+++ +L PAVGWVLFNIL+PALNQ+++M+ +
Sbjct: 159 DSDARGLIIIGLLLPAVGWVLFNILRPALNQIEKMQDQGNAAAITRKRGVIGALGLGTAS 218
Query: 272 XXXXXXXXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLD-- 445
QE+ +LADS D+RGL+++ L+PA+GWVLFNIL+PA+NQ++
Sbjct: 219 LFLAPHADAAQEIATLADS--------DSRGLIIIGLLLPAVGWVLFNILKPALNQINNI 270
Query: 446 -----------RMKTSKGIVVSLGLGAAASGVF--PGRSDAIQEMSSIAAADNDSRGILL 586
R K G++ + G+ AAA + P +QE++ + A D+R ++L
Sbjct: 271 VEGNDTGAPVKRGKKFGGMIGATGISAAAMSLLAAPKADAQVQEIAQLGA---DTRPLIL 327
Query: 587 LGVLIPAIGWVL 622
L +L PAIGWVL
Sbjct: 328 LFILAPAIGWVL 339
Score = 101 bits (251), Expect = 4e-20
Identities = 50/103 (48%), Positives = 74/103 (71%)
Frame = +2
Query: 314 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 493
+LA A + D R + L+ LVPA+GWVLFNIL+PA+NQ+D+MK +K +V GLGA
Sbjct: 80 ALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMKAAKSLVAGAGLGA 139
Query: 494 AASGVFPGRSDAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
A P +DA QE++ + AD+D+RG++++G+L+PA+GWVL
Sbjct: 140 LALVAAP-HADAAQEIAQV--ADSDARGLIIIGLLLPAVGWVL 179
Score = 85.1 bits (209), Expect = 3e-15
Identities = 50/120 (41%), Positives = 69/120 (57%), Gaps = 7/120 (5%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
D+DSRGL+++ +L PAVGWVLFNILKPALNQ++ + V+
Sbjct: 236 DSDSRGLIIIGLLLPAVGWVLFNILKPALNQINNI--VEGNDTGAPVKRGKKFGGMIGAT 293
Query: 293 XXVQEMGSLADSMKG-------ATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRM 451
SL + K A + +D R L+L+ L PA+GWVLFNIL+PA+NQ+D+M
Sbjct: 294 GISAAAMSLLAAPKADAQVQEIAQLGADTRPLILLFILAPAIGWVLFNILKPALNQVDKM 353
Score = 37.4 bits (85), Expect = 0.73
Identities = 20/53 (37%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Frame = +2
Query: 473 VSLGLGAAASGVFPGRSDAIQEMSS---IAAADNDSRGILLLGVLIPAIGWVL 622
+S+G A A +F + + ++S +A A+ D+R + LL L+PAIGWVL
Sbjct: 59 ISVGANALAGAMFAAMATSESALASQQIMALAEGDNRVVALLIPLVPAIGWVL 111
>tr|B6SR26|B6SR26_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 176
Score = 104 bits (260), Expect = 4e-21
Identities = 56/108 (51%), Positives = 81/108 (75%), Gaps = 5/108 (4%)
Frame = +2
Query: 314 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 493
+LAD + A D+RG +L+ + PA+GWVL+NILQPA+NQL+RM++S+ + LGLGA
Sbjct: 52 ALADVVAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGA 111
Query: 494 AASGV-FPGRSDA--IQEMSSIAAA--DNDSRGILLLGVLIPAIGWVL 622
AA+G+ P + A +Q++++IAAA +DSRG+LLL V+ PAIGWVL
Sbjct: 112 AAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVL 159
Score = 96.7 bits (239), Expect = 1e-18
Identities = 53/115 (46%), Positives = 74/115 (64%), Gaps = 2/115 (1%)
Frame = +2
Query: 119 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVK--XXXXXXXXXXXXXXXXXXXXX 292
DSRG L+L V+APA+GWVL+NIL+PALNQL+RM+S +
Sbjct: 65 DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAGMAAPPEASA 124
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
VQ++ ++A A D+RGL+L+ + PA+GWVLFNILQPA+NQL+RM++
Sbjct: 125 AVVQDLAAIA----AAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 175
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/36 (77%), Positives = 35/36 (97%)
Frame = +2
Query: 116 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 223
+DSRGLL+L V+APA+GWVLFNIL+PALNQL+RM+S
Sbjct: 140 DDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 175
>tr|A9U315|A9U315_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_155209 PE=4 SV=1
Length = 137
Score = 103 bits (257), Expect = 8e-21
Identities = 50/103 (48%), Positives = 75/103 (72%)
Frame = +2
Query: 314 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 493
++A A + D R + L+ L+PA+GWVLFNILQPA+NQ+D+M+ +K +V GLGA
Sbjct: 21 AMASQQIMALAEGDNRVVALLIPLIPAIGWVLFNILQPALNQVDKMRGAKALVAGAGLGA 80
Query: 494 AASGVFPGRSDAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
AA+ + +DA QE + I AD+D+RG++++G+L+PAIGWVL
Sbjct: 81 AATLMAAPHADAAQEFAQI--ADSDARGLIIVGLLLPAIGWVL 121
Score = 92.8 bits (229), Expect = 1e-17
Identities = 49/114 (42%), Positives = 69/114 (60%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+R + +L L PA+GWVLFNIL+PALNQ+D+M+ K
Sbjct: 32 EGDNRVVALLIPLIPAIGWVLFNILQPALNQVDKMRGAKALVAGAGLGAAATLMAAPHAD 91
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK 454
QE +ADS DARGL++V L+PA+GWVLFNIL+PA+NQ+++M+
Sbjct: 92 A-AQEFAQIADS--------DARGLIIVGLLLPAIGWVLFNILRPALNQIEKMQ 136
Score = 57.0 bits (136), Expect = 9e-07
Identities = 22/37 (59%), Positives = 35/37 (94%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 223
D+D+RGL+++ +L PA+GWVLFNIL+PALNQ+++M++
Sbjct: 101 DSDARGLIIVGLLLPAIGWVLFNILRPALNQIEKMQN 137
>tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 196
Score = 102 bits (255), Expect = 1e-20
Identities = 54/116 (46%), Positives = 75/116 (64%), Gaps = 2/116 (1%)
Frame = +2
Query: 116 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS--VKXXXXXXXXXXXXXXXXXXXX 289
+D+RG L+LFV+APA+GWVL+NIL+PALNQL+RM+S V
Sbjct: 80 SDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMRSQAVVAGLGLGAAAAGMAAAPEASA 139
Query: 290 XXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
Q++ +LA + A D RGL+L+ + PA+GWVLFNILQPA+NQ++RMK+
Sbjct: 140 AAAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVLFNILQPALNQINRMKS 195
Score = 94.0 bits (232), Expect = 7e-18
Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 10/112 (8%)
Frame = +2
Query: 317 LADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAA 496
+AD A SD RG +L+ + PA+GWVL+NILQPA+NQL+RM+ S+ +V LGLGAA
Sbjct: 69 VADVAAAADAGSDNRGQLLLFVVAPAIGWVLYNILQPALNQLNRMR-SQAVVAGLGLGAA 127
Query: 497 ASGVF----PGRSDAIQEMSSIAAA------DNDSRGILLLGVLIPAIGWVL 622
A+G+ + A Q+++++AAA +D+RG+LLL V+ PAIGWVL
Sbjct: 128 AAGMAAAPEASAAAAAQDLAALAAAAAAAAPADDNRGLLLLIVVTPAIGWVL 179
>tr|B6SQV2|B6SQV2_MAIZE Photosystem II core complex proteins psbY
OS=Zea mays PE=2 SV=1
Length = 191
Score = 98.6 bits (244), Expect = 3e-19
Identities = 54/109 (49%), Positives = 78/109 (71%), Gaps = 6/109 (5%)
Frame = +2
Query: 314 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 493
+LAD + A D+RG +L+ + PA+GWVL+NILQPA+NQL+RM++S+ + LGLGA
Sbjct: 67 ALAD-VAAADAGGDSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGA 125
Query: 494 AASGVFPGRSDA----IQEMSSIAAA--DNDSRGILLLGVLIPAIGWVL 622
AA+ +A +Q++++IAAA +DSRG+LLL V+ PAIGWVL
Sbjct: 126 AAAAGMAAPPEASAAVVQDLAAIAAAAPADDSRGLLLLIVVAPAIGWVL 174
Score = 97.8 bits (242), Expect = 5e-19
Identities = 54/116 (46%), Positives = 74/116 (63%), Gaps = 3/116 (2%)
Frame = +2
Query: 119 DSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS---VKXXXXXXXXXXXXXXXXXXXX 289
DSRG L+L V+APA+GWVL+NIL+PALNQL+RM+S V
Sbjct: 79 DSRGQLLLVVVAPAIGWVLYNILQPALNQLNRMRSSQAVAAGLGLGAAAAAGMAAPPEAS 138
Query: 290 XXXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
VQ++ ++A A D+RGL+L+ + PA+GWVLFNILQPA+NQL+RM++
Sbjct: 139 AAVVQDLAAIA----AAAPADDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 190
Score = 62.8 bits (151), Expect = 2e-08
Identities = 28/36 (77%), Positives = 35/36 (97%)
Frame = +2
Query: 116 NDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 223
+DSRGLL+L V+APA+GWVLFNIL+PALNQL+RM+S
Sbjct: 155 DDSRGLLLLIVVAPAIGWVLFNILQPALNQLNRMRS 190
Score = 37.4 bits (85), Expect = 0.73
Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 4/61 (6%)
Frame = +2
Query: 452 KTSKGIVVSLGLGAAASGVFPGR--SDAIQEMSSIAAAD--NDSRGILLLGVLIPAIGWV 619
+ +K +S+ + +G F S ++ +AAAD DSRG LLL V+ PAIGWV
Sbjct: 37 QAAKKAALSVSASSTLAGAFLAALASSPDAALADVAAADAGGDSRGQLLLVVVAPAIGWV 96
Query: 620 L 622
L
Sbjct: 97 L 97
>tr|A9TFS8|A9TFS8_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_8237 PE=4 SV=1
Length = 130
Score = 98.2 bits (243), Expect = 3e-19
Identities = 48/103 (46%), Positives = 75/103 (72%)
Frame = +2
Query: 314 SLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA 493
+LA A + D R + L+ LVPA+GWVLFNIL+PA+NQ+D+M+++K +V GLG+
Sbjct: 15 ALASQQIMALAEGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMRSAKALVAGAGLGS 74
Query: 494 AASGVFPGRSDAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
A P +DA QE++ + A++D+RG++++G+L+PAIGWVL
Sbjct: 75 LAMLAAP-HADAAQEIAQV--AESDARGLIIIGLLLPAIGWVL 114
Score = 93.6 bits (231), Expect = 9e-18
Identities = 49/114 (42%), Positives = 70/114 (61%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+R + +L L PA+GWVLFNILKPALNQ+D+M+S K
Sbjct: 26 EGDNRVVALLIPLVPAIGWVLFNILKPALNQVDKMRSAKALVAGAGLGSLAMLAAPHADA 85
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMK 454
QE+ +A+S DARGL+++ L+PA+GWVLFNIL+PA+NQ ++M+
Sbjct: 86 --AQEIAQVAES--------DARGLIIIGLLLPAIGWVLFNILRPALNQFEKMQ 129
Score = 55.1 bits (131), Expect = 3e-06
Identities = 21/37 (56%), Positives = 34/37 (91%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKS 223
++D+RGL+++ +L PA+GWVLFNIL+PALNQ ++M++
Sbjct: 94 ESDARGLIIIGLLLPAIGWVLFNILRPALNQFEKMQN 130
>tr|A9PJP0|A9PJP0_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 192
Score = 97.8 bits (242), Expect = 5e-19
Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 347 DSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVFPGRSD 526
+ D RGL L+ L+PA+ WVLFNILQPA+NQ++RM+ ++G+++ LGLG A+ F D
Sbjct: 84 EGDNRGLALLLPLIPAIAWVLFNILQPALNQVNRMRETRGVIIGLGLGGLAASGFMSTPD 143
Query: 527 A-IQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
A E++ IA A +DSRG LLL V+ PAI WVL
Sbjct: 144 ASASEIARIAEATSDSRGTLLLLVVAPAILWVL 176
Score = 86.7 bits (213), Expect = 1e-15
Identities = 44/115 (38%), Positives = 68/115 (59%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+RGL +L L PA+ WVLFNIL+PALNQ++RM+ +
Sbjct: 84 EGDNRGLALLLPLIPAIAWVLFNILQPALNQVNRMRETRGVIIGLGLGGLAASGFMSTPD 143
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
E+ +A++ SD+RG +L+ + PA+ WVL+NILQPA+NQ++RM++
Sbjct: 144 ASASEIARIAEA------TSDSRGTLLLLVVAPAILWVLYNILQPALNQINRMRS 192
>tr|A9PJJ8|A9PJJ8_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 196
Score = 97.4 bits (241), Expect = 6e-19
Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 347 DSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVFPGRSD 526
+ D RG+ L+ L+PA+ WVLFNILQPA+NQ++RM+ +KG++V LGLG A+ F D
Sbjct: 87 EGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPD 146
Query: 527 A-IQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
A E++ IA A +D+RG LLL V+ PAI WVL
Sbjct: 147 ASASEIAMIAEATSDNRGTLLLIVVAPAILWVL 179
Score = 85.1 bits (209), Expect = 3e-15
Identities = 43/115 (37%), Positives = 67/115 (58%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+RG+ +L L PA+ WVLFNIL+PALNQ++RM+ K
Sbjct: 87 EGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPD 146
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
E+ +A++ SD RG +L+ + PA+ WVL+NILQPA+NQ+++M++
Sbjct: 147 ASASEIAMIAEA------TSDNRGTLLLIVVAPAILWVLYNILQPALNQINKMRS 195
Score = 34.7 bits (78), Expect = 4.7
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +2
Query: 431 INQLDRMKTSKGIVVS-------LGLGAAASGVFPGRSD-----AIQEMSSIAAADNDSR 574
++ L + KG+ +S L A A +F S A Q+++ IA DN R
Sbjct: 34 VSLLSMLNLPKGLTISKPADNTVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDN--R 91
Query: 575 GILLLGVLIPAIGWVL 622
GI LL LIPAI WVL
Sbjct: 92 GIALLLPLIPAIAWVL 107
>tr|A9PJ80|A9PJ80_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 196
Score = 97.1 bits (240), Expect = 8e-19
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 347 DSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGA-AASGVFPGRS 523
+ D RGL L+ L+PA+ WVLFNILQPA+NQ++RM+ +KG++V LGLG AASG
Sbjct: 87 EGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPH 146
Query: 524 DAIQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
+ E++ IA A +D+RG LLL V+ PAI WVL
Sbjct: 147 ASASEIAMIADATSDNRGTLLLIVVAPAILWVL 179
Score = 87.4 bits (215), Expect = 6e-16
Identities = 45/115 (39%), Positives = 67/115 (58%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+RGL +L L PA+ WVLFNIL+PALNQ++RM+ K
Sbjct: 87 EGDNRGLALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPH 146
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
E+ +AD+ SD RG +L+ + PA+ WVL+NILQPA+NQ+++M++
Sbjct: 147 ASASEIAMIADA------TSDNRGTLLLIVVAPAILWVLYNILQPALNQINKMRS 195
>tr|A9PIV1|A9PIV1_POPJC Putative uncharacterized protein OS=Populus
jackii PE=2 SV=1
Length = 196
Score = 97.1 bits (240), Expect = 8e-19
Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)
Frame = +2
Query: 347 DSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKTSKGIVVSLGLGAAASGVFPGRSD 526
+ D RG+ L+ L+PA+ WVLFNILQPA+NQ++RM+ +KG++V LGLG A+ F D
Sbjct: 87 EGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPD 146
Query: 527 A-IQEMSSIAAADNDSRGILLLGVLIPAIGWVL 622
A E++ IA A +D+RG LLL V+ PAI WVL
Sbjct: 147 ASASEIAMIAEAASDNRGTLLLIVVAPAILWVL 179
Score = 85.1 bits (209), Expect = 3e-15
Identities = 43/115 (37%), Positives = 67/115 (58%)
Frame = +2
Query: 113 DNDSRGLLVLFVLAPAVGWVLFNILKPALNQLDRMKSVKXXXXXXXXXXXXXXXXXXXXX 292
+ D+RG+ +L L PA+ WVLFNIL+PALNQ++RM+ K
Sbjct: 87 EGDNRGIALLLPLIPAIAWVLFNILQPALNQINRMRQTKGVIVGLGLGGLAASGFISTPD 146
Query: 293 XXVQEMGSLADSMKGATVDSDARGLVLVASLVPALGWVLFNILQPAINQLDRMKT 457
E+ +A++ SD RG +L+ + PA+ WVL+NILQPA+NQ+++M++
Sbjct: 147 ASASEIAMIAEAA------SDNRGTLLLIVVAPAILWVLYNILQPALNQINKMRS 195
Score = 34.7 bits (78), Expect = 4.7
Identities = 28/76 (36%), Positives = 37/76 (48%), Gaps = 12/76 (15%)
Frame = +2
Query: 431 INQLDRMKTSKGIVVS-------LGLGAAASGVFPGRSD-----AIQEMSSIAAADNDSR 574
++ L + KG+ +S L A A +F S A Q+++ IA DN R
Sbjct: 34 VSLLSMLNLPKGLTISKPADNTVLTGTAIAGAIFTTLSSCEPAFAAQQIAEIAEGDN--R 91
Query: 575 GILLLGVLIPAIGWVL 622
GI LL LIPAI WVL
Sbjct: 92 GIALLLPLIPAIAWVL 107
|