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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK958059
Clone id TST39A01NGRL0030_A04
Library
Length 639
Definition Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_A04. 5' end sequence.
Accession
Tissue type prothallia with plantlets
Developmental stage gametophytes with sporophytes
Contig ID
Sequence 
CTTGGTTTTGGTGATCGATCGTGCACGAGCGGCCTCACAATGTTCGCAGCCTAGTTAAGA
GCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACAC
ACAGACACACAGAGACCCGCCATACCTTTCTGCTTATAACCTTGGTCTCTTTTTCACTCT
CCTGCCCCACGCCTTGACGGTTTTTTGGCGCTCAAATTAGCTTCTCTCCAGCCCGTTGAC
CTTCCCGGCTTTTTTACACCACGCGATTGCCCTTCCGATTTTAACCCAGATTTCTCTGTG
CATTGCTTTCGAAGCTGCGCGGCTCTGTGGCAATTGGAGCGATCGTTTCTCTGGAGCAAG
TGCGTGGAGATCAGCTGATCATATACAAAGCCCGACAAGCCTACTGCATTGCCAAGTATT
AACAGGTTGCTACAAATACACCGCCAGGGAATGTTCTTGACGACGTAACATCGGGCCCTG
CAGTGGATGGCAGCGAAAGGCTGCTCTGACATGGTGTCAAAAGCTAAAGAGTTCTCTAAT
CAAAGGATCATCTGACGTCTTATAGGACATCTGCTGAGACTTAGAAGGGCTCAAAAATAG
TGGCCTTGGCATCAAGATTCTCAGTTCAGGGCTATGGGA
■■Homology search results ■■ -
sp_hit_id Q52TG6
Definition sp|Q52TG6|MATK_TYPAN Maturase K OS=Typha angustifolia
Align length 74
Score (bit) 32.7
E-value 1.6
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958059|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_A04, 5'
         (639 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q52TG6|MATK_TYPAN Maturase K OS=Typha angustifolia GN=matK PE...    33   1.6  
sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus muscu...    30   8.1  
sp|Q9GIG3|MATK_LILTS Maturase K OS=Lilium tsingtauense GN=matK P...    30   8.1  
sp|Q9B1U9|MATK_LILLO Maturase K OS=Lilium longiflorum GN=matK PE...    30   8.1  
sp|Q8UBM5|HTPX_AGRT5 Probable protease htpX homolog OS=Agrobacte...    30   8.1  
sp|Q8C6C7|CJ084_MOUSE Uncharacterized protein C10orf84 homolog O...    30   8.1  

>sp|Q52TG6|MATK_TYPAN Maturase K OS=Typha angustifolia GN=matK PE=3
           SV=1
          Length = 513

 Score = 32.7 bits (73), Expect = 1.6
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
 Frame = +2

Query: 230 SPLTFPAFLHHAIALPILTQISLC-IAFEAARLCGNWSDRFSGASAWRSADHIQSPTSLL 406
           S   F   L H I+ PI T +S C I     R+C N S  +SG+S  RS   I+      
Sbjct: 384 SKAKFCTLLGHPISKPIWTDLSDCDIIDRFGRICRNLSHYYSGSSKKRSLYRIKYILRFS 443

Query: 407 HCQVLTGCYKYTAR 448
             + L   +K T R
Sbjct: 444 CARTLARKHKSTVR 457


>sp|Q9Z1J1|TF7L1_MOUSE Transcription factor 7-like 1 OS=Mus musculus
           GN=Tcf7l1 PE=1 SV=2
          Length = 584

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 221 LLSSPLTFPAFLHHAIALPILTQISLCIAFEAA 319
           LL+SP TFPA LH   ALP+L    L +  ++A
Sbjct: 551 LLTSPPTFPATLHAHQALPVLQAQPLSLVTKSA 583


>sp|Q9GIG3|MATK_LILTS Maturase K OS=Lilium tsingtauense GN=matK PE=2
           SV=1
          Length = 512

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 230 SPLTFPAFLHHAIALPILTQIS-LCIAFEAARLCGNWSDRFSGASAWRSADHIQSPTSLL 406
           S   F  F  H I+ PI   +S   I     R+C N S  +SG+S  +S   I+    L 
Sbjct: 383 SKAKFCTFSGHPISKPIWADLSDFDIIDRFGRICRNLSHYYSGSSKKQSLYRIKYILRLS 442

Query: 407 HCQVLTGCYKYTARECS*RRNIG 475
             + L   +K TAR    R  +G
Sbjct: 443 CARTLARKHKSTARALLQRLGLG 465


>sp|Q9B1U9|MATK_LILLO Maturase K OS=Lilium longiflorum GN=matK PE=3
           SV=1
          Length = 512

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = +2

Query: 230 SPLTFPAFLHHAIALPILTQIS-LCIAFEAARLCGNWSDRFSGASAWRSADHIQSPTSLL 406
           S   F  F  H I+ PI   +S   I     R+C N S  +SG+S  +S   I+    L 
Sbjct: 383 SKAKFCTFSGHPISKPIWADLSDFDIIDRFGRICRNLSHYYSGSSKKQSLYRIKYILRLS 442

Query: 407 HCQVLTGCYKYTARECS*RRNIG 475
             + L   +K TAR    R  +G
Sbjct: 443 CARTLARKHKSTARALLQRLGLG 465


>sp|Q8UBM5|HTPX_AGRT5 Probable protease htpX homolog
           OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970)
           GN=htpX PE=3 SV=1
          Length = 321

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -2

Query: 398 LSGFVYDQLISTHLLQRNDRSNCHRAAQLRKQCTEKSGLKSEGQSRGVKKPGR--STGWR 225
           LSG   D L STH    N  +  H  AQ   + + ++        R V+K G   +TGWR
Sbjct: 253 LSGERMDNLFSTHPNTENRVAALHAMAQ---EFSPRASTPPPSGDRPVRKSGSVPTTGWR 309

Query: 224 EANLSAKK 201
             N + +K
Sbjct: 310 RGNENERK 317


>sp|Q8C6C7|CJ084_MOUSE Uncharacterized protein C10orf84 homolog
           OS=Mus musculus GN=D19Ertd737e PE=2 SV=1
          Length = 236

 Score = 30.4 bits (67), Expect = 8.1
 Identities = 19/44 (43%), Positives = 22/44 (50%)
 Frame = -1

Query: 297 REIWVKIGRAIAWCKKAGKVNGLERS*FERQKTVKAWGRRVKKR 166
           RE+ VKI +AIA  K        E S   R+K   AWG   KKR
Sbjct: 183 RELGVKIAKAIACHKFVKAKKEAENSQAARKKKKLAWGFEAKKR 226
tr_hit_id Q4X8I5
Definition tr|Q4X8I5|Q4X8I5_PLACH Putative uncharacterized protein (Fragment) OS=Plasmodium chabaudi
Align length 53
Score (bit) 35.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK958059|Adiantum capillus-veneris mRNA, clone:
TST39A01NGRL0030_A04, 5'
         (639 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4X8I5|Q4X8I5_PLACH Putative uncharacterized protein (Fragmen...    35   2.9  
tr|B4PTS9|B4PTS9_DROYA GE25350 OS=Drosophila yakuba GN=GE25350 P...    35   2.9  
tr|B4JH90|B4JH90_DROGR GH19526 OS=Drosophila grimshawi GN=GH1952...    35   2.9  
tr|Q9FRS6|Q9FRS6_ARATH F22O13.7 OS=Arabidopsis thaliana GN=At1g0...    34   6.5  
tr|A7S3T8|A7S3T8_NEMVE Predicted protein (Fragment) OS=Nematoste...    34   8.6  

>tr|Q4X8I5|Q4X8I5_PLACH Putative uncharacterized protein (Fragment)
           OS=Plasmodium chabaudi GN=PC404981.00.0 PE=4 SV=1
          Length = 211

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 293 KSGLKSEGQSRGVKKPGRSTGWREANLSAKKPSRRGAGE*KRDQGYKQKGMAG 135
           + G K EG+  GVKK G     +E     KK    G  +   ++G K++G  G
Sbjct: 45  EEGAKKEGEEEGVKKEGEEGAKKEGEEGTKKEGEEGTKKEGEEEGTKKEGEEG 97


>tr|B4PTS9|B4PTS9_DROYA GE25350 OS=Drosophila yakuba GN=GE25350 PE=4
            SV=1
          Length = 1137

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
 Frame = -2

Query: 350  RNDRSNCHRAAQLRKQCTEKSGLKSEGQSRGVKKPGRSTG--WREANLSAKKPSRRGAGE 177
            R DR +  R    R +  E+SG +     R  ++P R TG  WR+A   A + +RR AG 
Sbjct: 1014 RRDRDDGPR----RDRDDERSGFRRNDGPRRTEEPQRETGGNWRDAPRHADRENRRTAGG 1069

Query: 176  *KRDQGYKQ 150
             +RD+  ++
Sbjct: 1070 ERRDRDVRE 1078


>tr|B4JH90|B4JH90_DROGR GH19526 OS=Drosophila grimshawi GN=GH19526
           PE=4 SV=1
          Length = 451

 Score = 35.4 bits (80), Expect = 2.9
 Identities = 28/77 (36%), Positives = 38/77 (49%)
 Frame = -2

Query: 365 THLLQRNDRSNCHRAAQLRKQCTEKSGLKSEGQSRGVKKPGRSTGWREANLSAKKPSRRG 186
           TH  +   RS    AA      T  + + S G+ RG ++ GRS   R A   AKK S  G
Sbjct: 334 THRSRSRSRSRARNAAAAAGGATAGAAVSSNGRQRGGRR-GRSLQ-RNAGKVAKKNSTAG 391

Query: 185 AGE*KRDQGYKQKGMAG 135
           AG+ K+ Q  +Q+G  G
Sbjct: 392 AGKGKQKQ-QQQQGRRG 407


>tr|Q9FRS6|Q9FRS6_ARATH F22O13.7 OS=Arabidopsis thaliana
           GN=At1g08590 PE=4 SV=1
          Length = 1029

 Score = 34.3 bits (77), Expect = 6.5
 Identities = 28/86 (32%), Positives = 38/86 (44%)
 Frame = -2

Query: 536 ENSLAFDTMSEQPFAAIHCRARCYVVKNIPWRCICSNLLILGNAVGLSGFVYDQLISTHL 357
           EN+  F  +    +  +HC A  YV K           L+L N + LSG V DQ+ S   
Sbjct: 55  ENATTFSELVHCHWTGVHCDANGYVAK-----------LLLSN-MNLSGNVSDQIQSFPS 102

Query: 356 LQRNDRSNCHRAAQLRKQCTEKSGLK 279
           LQ  D SN    + L K  +  + LK
Sbjct: 103 LQALDLSNNAFESSLPKSLSNLTSLK 128


>tr|A7S3T8|A7S3T8_NEMVE Predicted protein (Fragment) OS=Nematostella
           vectensis GN=v1g24957 PE=4 SV=1
          Length = 215

 Score = 33.9 bits (76), Expect = 8.6
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 296 EKSGLKSEGQSRGVKKPGRSTGWREANLSAKKPSRRGAGE*K--RDQGYKQ 150
           E  GL+ EG+SRG++    S G R+A    K    R AGE +  RD+G  Q
Sbjct: 13  ESQGLRDEGESRGLRNADESQGLRDA---GKSQGFRDAGESQGLRDEGESQ 60



 Score = 33.9 bits (76), Expect = 8.6
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -2

Query: 296 EKSGLKSEGQSRGVKKPGRSTGWREANLSAKKPSRRGAGE*K--RDQGYKQ 150
           E  GL+ EG+SRG++    S G R+A    K    R AGE +  RD+G  Q
Sbjct: 94  ESQGLRDEGESRGLRNADESQGLRDA---GKSQGFRDAGESQGLRDEGESQ 141