DK958073 |
Clone id |
TST39A01NGRL0030_A18 |
Library |
TST39 |
Length |
616 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_A18. 5' end sequence. |
Accession |
DK958073 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL2519Contig1 |
Sequence |
GGAGGGCATTACACTGCCTATGTGAAGCTGCTGGAAGAGAAATGTTGGTACAATTTTGAT GATAGTCATGTGTCGCCAGTGGGTGAAAATGAGATCAAAACTGCTGCAGCATACGTATTA TTCTATCGCAAAGTCAGAAGAGAAAACGGCAACGGATGTTTGAGCAATGGGGTTGCCAGC CACGATGCAGTCAAGAAGTGATACCCTATTCCTGCAATTCATCCAGTCTGAAGTATGCAC CGTCCCGTCCTTTCACTCTCTCAGTGACTTGAAAGATTTTGACAGAAGCTGTTTGTGGAT GATGTGCTGGGAGAGCCTTGTGTACAATAGGAGTTCTGCAAGAGCCAAAGAGATCTTCAT TTTCCACCATGTACGTCTCATACTAAGTCCTGAATGAACAATGTGAGCTCCCGCCTCCAG ATAGGCTCTTTATATACATGCCCCATATGTGGGTATGTCAGGCTGGTTTCTTAGACTGGC AGTCTAGGAAACAAGAAGTTTATGTGTGATTTCTTGCAATGCTGCGTCGCCCATTGGCAG TAGTAGAGGCAGGTCAAGCAGTATGGCAATATTATTATTCTTTATCGAGGATCGGGTTTC TTGAGGTGTATTGTCA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q93Y01 |
Definition |
sp|Q93Y01|UBP9_ARATH Ubiquitin carboxyl-terminal hydrolase 9 OS=Arabidopsis thaliana |
Align length |
48 |
Score (bit) |
78.2 |
E-value |
3.0e-14 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A7QJ40 |
Definition |
tr|A7QJ40|A7QJ40_VITVI Ubiquitin carboxyl-terminal hydrolase OS=Vitis vinifera |
Align length |
46 |
Score (bit) |
81.3 |
E-value |
4.0e-14 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958073|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_A18, 5' (616 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A7QJ40|A7QJ40_VITVI Ubiquitin carboxyl-terminal hydrolase OS=... 81 4e-14 tr|B8BKF7|B8BKF7_ORYSI Putative uncharacterized protein OS=Oryza... 81 6e-14 tr|A5CBC5|A5CBC5_VITVI Putative uncharacterized protein OS=Vitis... 77 6e-13 tr|Q8LMT7|Q8LMT7_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=... 75 3e-12 tr|Q33AW7|Q33AW7_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=... 75 3e-12 tr|A7QYJ5|A7QYJ5_VITVI Chromosome undetermined scaffold_248, who... 72 3e-11 tr|Q2QM18|Q2QM18_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=... 69 3e-10 tr|Q0ILU8|Q0ILU8_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=... 69 3e-10 tr|B8BN24|B8BN24_ORYSI Putative uncharacterized protein OS=Oryza... 69 3e-10 tr|A3CJJ2|A3CJJ2_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=... 69 3e-10 tr|A7PGA8|A7PGA8_VITVI Ubiquitin carboxyl-terminal hydrolase OS=... 65 2e-09 tr|A7Q084|A7Q084_VITVI Ubiquitin carboxyl-terminal hydrolase OS=... 63 2e-08 tr|Q8AVB6|Q8AVB6_XENLA Ubiquitin carboxyl-terminal hydrolase (Fr... 61 5e-08 tr|Q2NLB3|Q2NLB3_XENLA Ubiquitin carboxyl-terminal hydrolase OS=... 61 5e-08 tr|A7RVV5|A7RVV5_NEMVE Ubiquitin carboxyl-terminal hydrolase OS=... 60 8e-08 tr|A0DHG2|A0DHG2_PARTE Chromosome undetermined scaffold_50, whol... 60 8e-08 tr|B8B7E9|B8B7E9_ORYSI Putative uncharacterized protein OS=Oryza... 59 3e-07 tr|A0E8X5|A0E8X5_PARTE Chromosome undetermined scaffold_83, whol... 59 3e-07 tr|B7QDB1|B7QDB1_IXOSC Ubiquitin carboxy-terminal hydrolase, put... 58 4e-07 tr|B3SCT1|B3SCT1_TRIAD Putative uncharacterized protein (Fragmen... 58 4e-07 tr|Q6CEM1|Q6CEM1_YARLI Ubiquitin carboxyl-terminal hydrolase OS=... 58 4e-07 tr|B6PKX1|B6PKX1_BRAFL Putative uncharacterized protein OS=Branc... 57 7e-07 tr|A0DAB1|A0DAB1_PARTE Ubiquitin carboxyl-terminal hydrolase OS=... 57 7e-07 tr|Q9R085|Q9R085_RAT Ubiquitin carboxyl-terminal hydrolase OS=Ra... 57 9e-07 tr|Q80UK9|Q80UK9_MOUSE Ubiquitin carboxyl-terminal hydrolase OS=... 57 9e-07 tr|Q80TY6|Q80TY6_MOUSE Ubiquitin carboxyl-terminal hydrolase (Fr... 57 9e-07 tr|Q3UZH0|Q3UZH0_MOUSE Ubiquitin carboxyl-terminal hydrolase OS=... 57 9e-07 tr|Q3TTB2|Q3TTB2_MOUSE Ubiquitin carboxyl-terminal hydrolase OS=... 57 9e-07 tr|Q3TSV9|Q3TSV9_MOUSE Putative uncharacterized protein (Fragmen... 57 9e-07 tr|Q3TGF5|Q3TGF5_MOUSE Ubiquitin carboxyl-terminal hydrolase OS=... 57 9e-07
>tr|A7QJ40|A7QJ40_VITVI Ubiquitin carboxyl-terminal hydrolase OS=Vitis vinifera GN=GSVIVT00000496001 PE=3 SV=1 Length = 743
Score = 81.3 bits (199), Expect = 4e-14 Identities = 34/46 (73%), Positives = 43/46 (93%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVR 138 GGHY+AY KL++E WY+FDDSHVSPVGE+EIKT+AAYVLFY++V+ Sbjct: 681 GGHYSAYAKLIDENRWYHFDDSHVSPVGESEIKTSAAYVLFYQRVK 726
>tr|B8BKF7|B8BKF7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_36069 PE=4 SV=1 Length = 918
Score = 80.9 bits (198), Expect = 6e-14 Identities = 36/60 (60%), Positives = 45/60 (75%) Frame = +1
Query: 4 GHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRRENGNGCLSNGVASH 183 GHYTAY+KLL+E+ WYNFDDSHVS + E ++K+ AAYVLFYR+VR G SN + H Sbjct: 853 GHYTAYIKLLDEERWYNFDDSHVSAINEEDVKSGAAYVLFYRRVR----GGAASNAIHPH 908
>tr|A5CBC5|A5CBC5_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009778 PE=4 SV=1 Length = 1670
Score = 77.4 bits (189), Expect = 6e-13 Identities = 33/59 (55%), Positives = 48/59 (81%) Frame = +1
Query: 4 GHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRRENGNGCLSNGVAS 180 GHYTA++KLL+E WYNFDDSH+S + E ++K+AAAYVLFY++V+ ++ + +SNG S Sbjct: 1560 GHYTAHIKLLDENRWYNFDDSHISAINEEDVKSAAAYVLFYKRVKIDDAS--VSNGAQS 1616
>tr|Q8LMT7|Q8LMT7_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. japonica GN=OSJNBa0050E08.11 PE=3 SV=1 Length = 890
Score = 75.1 bits (183), Expect = 3e-12 Identities = 31/45 (68%), Positives = 40/45 (88%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKV 135 GGHY+AY KL+EE WY+FDDSHVS VGE +I+T++AY+LFYR+V Sbjct: 823 GGHYSAYAKLVEEDSWYHFDDSHVSSVGEEDIRTSSAYLLFYRRV 867
>tr|Q33AW7|Q33AW7_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. japonica GN=Os10g0160000 PE=2 SV=1 Length = 931
Score = 75.1 bits (183), Expect = 3e-12 Identities = 31/45 (68%), Positives = 40/45 (88%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKV 135 GGHY+AY KL+EE WY+FDDSHVS VGE +I+T++AY+LFYR+V Sbjct: 864 GGHYSAYAKLVEEDSWYHFDDSHVSSVGEEDIRTSSAYLLFYRRV 908
>tr|A7QYJ5|A7QYJ5_VITVI Chromosome undetermined scaffold_248, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00009761001 PE=4 SV=1 Length = 650
Score = 72.0 bits (175), Expect = 3e-11 Identities = 28/43 (65%), Positives = 38/43 (88%) Frame = +1
Query: 4 GHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRK 132 GHYTA++KLL+E WYNFDDSH+S + E ++K+AAAYVLFY++ Sbjct: 540 GHYTAHIKLLDENRWYNFDDSHISAINEEDVKSAAAYVLFYKR 582
>tr|Q2QM18|Q2QM18_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. japonica GN=LOC_Os12g42600 PE=3 SV=2 Length = 801
Score = 68.6 bits (166), Expect = 3e-10 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRREN 147 GGHYTAYV +K WY+FDD HV P+ E IKT+AAYVLFYR+++ ++ Sbjct: 736 GGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDD 784
>tr|Q0ILU8|Q0ILU8_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. japonica GN=Os12g0621000 PE=3 SV=1 Length = 893
Score = 68.6 bits (166), Expect = 3e-10 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRREN 147 GGHYTAYV +K WY+FDD HV P+ E IKT+AAYVLFYR+++ ++ Sbjct: 828 GGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDD 876
>tr|B8BN24|B8BN24_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_39158 PE=4 SV=1 Length = 868
Score = 68.6 bits (166), Expect = 3e-10 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRREN 147 GGHYTAYV +K WY+FDD HV P+ E IKT+AAYVLFYR+++ ++ Sbjct: 803 GGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDD 851
>tr|A3CJJ2|A3CJJ2_ORYSJ Ubiquitin carboxyl-terminal hydrolase OS=Oryza sativa subsp. japonica GN=OsJ_035464 PE=3 SV=1 Length = 897
Score = 68.6 bits (166), Expect = 3e-10 Identities = 29/49 (59%), Positives = 38/49 (77%) Frame = +1
Query: 1 GGHYTAYVKLLEEKCWYNFDDSHVSPVGENEIKTAAAYVLFYRKVRREN 147 GGHYTAYV +K WY+FDD HV P+ E IKT+AAYVLFYR+++ ++ Sbjct: 832 GGHYTAYVYHEGKKGWYDFDDRHVGPISEESIKTSAAYVLFYRRIQGDD 880
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