DK958102 |
Clone id |
TST39A01NGRL0030_B23 |
Library |
TST39 |
Length |
576 |
Definition |
Adiantum capillus-veneris mRNA. clone: TST39A01NGRL0030_B23. 5' end sequence. |
Accession |
DK958102 |
Tissue type |
prothallia with plantlets |
Developmental stage |
gametophytes with sporophytes |
Contig ID |
CL967Contig1 |
Sequence |
GTCTGCCTTCTGAGATTGAAGGGAGCTTGGGCGATGGCGGTCTTTACCTTCGTATGCCGA CATGAGGACGGAACGTGGAGTGCGAAGCAGCAAAGTGGAGACCTTGAGGGGTCGGCAGAT TCCGCATTCGAGCTTCAACGCCATCTTTCCAAGCTGGCGTTCTCCTCTGCAGGATCCGGT GGCATCTCCTCCTCCTTCTCGTACATAACGCCCTCTGCTGCTGTTTTCCAGGTCATTGTT GGAGGTGGTGGTGGTGGAAGCTTCATTGGTGGCGGCGGTGGTGCTGGAGCTGTGCCAGCT GCAGCTGGTGGTGGAGCGGCCCCCGCTGTTGAGGAAAAGAAGGAAGAAGAAAAGAAAGAA GAAGAAGAAAGTGATGATGATATGGGCTTCTCTTTGTTTGACTAGGTAAAGTGTAGCACA AGCTGGAGGATGTTCTATCCATAGGTGAGCCAACAACGTAACTGTACTCTACAAGGAATT TAACAGTTTTGACAAAATGTGTTTTCCTCTTTCTTCTTCTGTAGTGTGGACACAGTATTT TACACATTTTGTGGTAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9SVZ6 |
Definition |
sp|Q9SVZ6|RLA31_ARATH 60S acidic ribosomal protein P3-1 OS=Arabidopsis thaliana |
Align length |
38 |
Score (bit) |
53.9 |
E-value |
5.0e-07 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NPS6 |
Definition |
tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
61 |
Score (bit) |
57.8 |
E-value |
4.0e-07 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK958102|Adiantum capillus-veneris mRNA, clone: TST39A01NGRL0030_B23, 5' (555 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea... 58 4e-07 tr|Q6Y1D6|Q6Y1D6_LACSA 60S acidic ribosomal protein P3 (Fragment... 55 2e-06 tr|Q6Y1D2|Q6Y1D2_9ASTR 60S acidic ribosomal protein P3 (Fragment... 55 2e-06 tr|Q6Y1D1|Q6Y1D1_9ASTR 60S acidic ribosomal protein P3 (Fragment... 55 2e-06 tr|Q6Y1D3|Q6Y1D3_9ASTR 60S acidic ribosomal protein P3 (Fragment... 54 7e-06 tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Popul... 53 1e-05 tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Popul... 53 1e-05 tr|B4G1B3|B4G1B3_MAIZE 60S acidic ribosomal protein P3 OS=Zea ma... 52 2e-05 tr|B3H523|B3H523_ARATH Uncharacterized protein At5g57290.2 OS=Ar... 52 3e-05 tr|B3H4N7|B3H4N7_ARATH Uncharacterized protein At5g57290.3 OS=Ar... 52 3e-05 tr|A7LIT3|A7LIT3_9ROSI Acidic ribosomal protein P3 OS=Corchorus ... 52 3e-05 tr|A7QLD3|A7QLD3_VITVI Chromosome chr11 scaffold_118, whole geno... 51 4e-05 tr|A5BBF0|A5BBF0_VITVI Putative uncharacterized protein OS=Vitis... 51 5e-05 tr|Q0D9S5|Q0D9S5_ORYSJ Os06g0701400 protein OS=Oryza sativa subs... 47 7e-04 tr|Q5NB69|Q5NB69_ORYSJ cDNA clone:002-128-C07, full insert seque... 47 0.001 tr|A2WMF3|A2WMF3_ORYSI Putative uncharacterized protein OS=Oryza... 47 0.001 tr|B6SQZ1|B6SQZ1_MAIZE 60S acidic ribosomal protein P3 OS=Zea ma... 46 0.001 tr|A9TMJ4|A9TMJ4_PHYPA Predicted protein OS=Physcomitrella paten... 46 0.001 tr|A9T572|A9T572_PHYPA Predicted protein OS=Physcomitrella paten... 43 0.010 tr|Q6Y1D4|Q6Y1D4_LACSA 60S acidic ribosomal protein P3 (Fragment... 40 0.065
>tr|A9NPS6|A9NPS6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 121
Score = 57.8 bits (138), Expect = 4e-07 Identities = 27/61 (44%), Positives = 35/61 (57%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYITP 213 M V+TF+C+ G W+AKQ SGDLEGSA S F+LQR L + Y++P Sbjct: 1 MGVYTFICKSSGGEWNAKQYSGDLEGSAASTFDLQRQLVNVALRSEGSGPVSSSFSYVSP 60
Query: 214 S 216 S Sbjct: 61 S 61
>tr|Q6Y1D6|Q6Y1D6_LACSA 60S acidic ribosomal protein P3 (Fragment) OS=Lactuca sativa PE=4 SV=1 Length = 112
Score = 55.5 bits (132), Expect = 2e-06 Identities = 25/38 (65%), Positives = 28/38 (73%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M VFTFVC+ G W+AKQ GDLEGSADS + LQR L Sbjct: 1 MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 38
>tr|Q6Y1D2|Q6Y1D2_9ASTR 60S acidic ribosomal protein P3 (Fragment) OS=Lactuca saligna PE=4 SV=1 Length = 119
Score = 55.5 bits (132), Expect = 2e-06 Identities = 25/38 (65%), Positives = 28/38 (73%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M VFTFVC+ G W+AKQ GDLEGSADS + LQR L Sbjct: 9 MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 46
>tr|Q6Y1D1|Q6Y1D1_9ASTR 60S acidic ribosomal protein P3 (Fragment) OS=Lactuca saligna PE=4 SV=1 Length = 119
Score = 55.5 bits (132), Expect = 2e-06 Identities = 25/38 (65%), Positives = 28/38 (73%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M VFTFVC+ G W+AKQ GDLEGSADS + LQR L Sbjct: 9 MGVFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 46
>tr|Q6Y1D3|Q6Y1D3_9ASTR 60S acidic ribosomal protein P3 (Fragment) OS=Lactuca serriola PE=4 SV=1 Length = 110
Score = 53.5 bits (127), Expect = 7e-06 Identities = 24/36 (66%), Positives = 27/36 (75%) Frame = +1
Query: 40 VFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 VFTFVC+ G W+AKQ GDLEGSADS + LQR L Sbjct: 1 VFTFVCKSSGGKWTAKQLKGDLEGSADSTYALQRSL 36
>tr|A9PE32|A9PE32_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 124
Score = 52.8 bits (125), Expect = 1e-05 Identities = 39/124 (31%), Positives = 42/124 (33%), Gaps = 1/124 (0%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQ-QSGDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYIT 210 M VFTFVCR WSAKQ GD+E SA S FELQR L + Y+T Sbjct: 1 MGVFTFVCRCSGNEWSAKQIAEGDIEASASSTFELQRKLVQSALSADSSGGVQSSFSYVT 60
Query: 211 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGF 390 PS DDDMGF Sbjct: 61 PSSAVFQVIIGGGCGGAFFGGGGGGAAAAPAGGAAAAAEAPAAEEKKKEEEPESDDDMGF 120
Query: 391 SLFD 402 SLFD Sbjct: 121 SLFD 124
>tr|A9P8B5|A9P8B5_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 124
Score = 52.8 bits (125), Expect = 1e-05 Identities = 39/124 (31%), Positives = 43/124 (34%), Gaps = 1/124 (0%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQS-GDLEGSADSAFELQRHLSKLXXXXXXXXXXXXXXXYIT 210 M VFTFVCR WSAKQ S G++E SA S FELQR L + Y+T Sbjct: 1 MGVFTFVCRSSSNEWSAKQISDGNIEASASSTFELQRKLVQSALSADSSGAVQSSFSYVT 60
Query: 211 PSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDDMGF 390 PS DDDMGF Sbjct: 61 PSSAVFQVVIGGSAGGAFFGGGGGGAVAAPAGGATAAAEAPAAEEKKKEEEPESDDDMGF 120
Query: 391 SLFD 402 SLFD Sbjct: 121 SLFD 124
>tr|B4G1B3|B4G1B3_MAIZE 60S acidic ribosomal protein P3 OS=Zea mays PE=4 SV=1 Length = 120
Score = 52.0 bits (123), Expect = 2e-05 Identities = 22/38 (57%), Positives = 29/38 (76%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M V+TFVCR+ G W+AKQ SG++E SA + +ELQR L Sbjct: 1 MGVYTFVCRNNGGEWTAKQHSGEIEASAATPYELQRRL 38
>tr|B3H523|B3H523_ARATH Uncharacterized protein At5g57290.2 OS=Arabidopsis thaliana GN=At5g57290 PE=4 SV=1 Length = 103
Score = 51.6 bits (122), Expect = 3e-05 Identities = 22/38 (57%), Positives = 28/38 (73%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M VF+FVC+ + G W+AKQ GDLE SA S ++LQR L Sbjct: 1 MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38
>tr|B3H4N7|B3H4N7_ARATH Uncharacterized protein At5g57290.3 OS=Arabidopsis thaliana GN=At5g57290 PE=4 SV=1 Length = 119
Score = 51.6 bits (122), Expect = 3e-05 Identities = 22/38 (57%), Positives = 28/38 (73%) Frame = +1
Query: 34 MAVFTFVCRHEDGTWSAKQQSGDLEGSADSAFELQRHL 147 M VF+FVC+ + G W+AKQ GDLE SA S ++LQR L Sbjct: 1 MGVFSFVCKSKGGEWTAKQHEGDLEASASSTYDLQRKL 38
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